euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

49 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip2468 chr1 95801843 95801843 - L1-Ta germline . no 170 .
srip5044 chr1 169524859 169524859 + L1-Ta germline . no 170 F5
srip5419 chr1 179575362 179575362 - L1-Ta germline . no 170 TDRD5
srip8441 chr10 25707687 25707687 - L1-Ta germline . no 170 GPR158
srip8659 chr10 27775762 27775762 + L1-Ta germline . no 170 .
srip18048 chr11 110377879 110377879 - L1-Ta germline validated no 170 .
srip20731 chr12 28226413 28226413 - L1-Ta germline validated no 170 .
srip26365 chr12 126802929 126802929 - L1-Ta germline . no 170 .
srip30398 chr13 72968682 72968682 + L1-Ta germline . no 170 .
srip31448 chr13 85871602 85871602 - L1-Ta germline . no 170 .
srip33026 chr13 99519887 99519887 + L1-Ta germline . no 170 DOCK9
srip35465 chr14 31150809 31150809 - L1-Ta germline . no 170 SCFD1
srip36050 chr14 36674760 36674760 + L1-Ta germline . no 170 .
srip38163 chr14 71197799 71197799 + L1-Ta germline . no 170 MAP3K9
srip38752 chr14 86381810 86381810 - L1-Ta germline . no 170 .
srip41651 chr15 61328974 61328974 - L1-Ta germline . no 170 RORA
srip43415 chr15 100931161 100931161 - L1-Ta germline . no 170 .
srip54234 chr2 36570243 36570243 - L1-Ta germline . no 170 .
srip54638 chr2 42051404 42051404 + L1-Ta germline . no 170 .
srip54931 chr2 53460052 53460052 + L1-Ta germline . no 170 .
srip56907 chr2 106163164 106163164 + L1-Ta germline . no 170 .
srip58581 chr2 144010793 144010793 + L1-Ta germline . no 170 ARHGAP15
srip63453 chr20 16479495 16479495 - L1-Ta germline . no 170 KIF16B
srip66051 chr21 19517313 19517313 - L1-Ta germline . no 170 .
srip66886 chr21 29069171 29069171 + L1-Ta germline . no 170 .
srip67866 chr22 22715602 22715602 + L1-Ta germline . no 170 IGL@
srip80422 chr3 176091333 176091333 + L1-Ta germline . no 170 .
srip81540 chr3 186372141 186372141 + L1-Ta germline . no 170 .
srip84904 chr4 47007790 47007790 - L1-Ta germline . no 170 .
srip86660 chr4 69572739 69572739 - L1-Ta germline . no 170 LOC728811
srip90006 chr4 112628973 112628973 + L1-Ta germline . no 170 .
srip96285 chr5 11391263 11391263 + L1-Ta germline . no 170 CTNND2
srip96991 chr5 23070278 23070278 + L1-Ta germline . no 170 .
srip100793 chr5 89450781 89450781 + L1-Ta germline . no 170 .
srip102277 chr5 109480258 109480258 - L1-Ta germline . no 170 .
srip104848 chr5 154873933 154873933 - L1-Ta germline . no 170 .
srip107569 chr6 13503049 13503049 + L1-Ta germline . no 170 .
srip109556 chr6 63368207 63368207 + L1-Ta germline . no 170 .
srip113343 chr6 123853938 123853938 - L1-Ta germline . no 170 TRDN
srip113791 chr6 142450101 142450101 - L1-Ta germline . no 170 .
srip117620 chr7 53652502 53652502 - L1-Ta germline . no 170 .
srip119874 chr7 84901724 84901724 - L1-Ta germline . no 170 .
srip124056 chr8 4452894 4452894 - L1-Ta germline . no 170 CSMD1
srip127344 chr8 72399221 72399221 - L1-Ta germline . no 170 .
srip128259 chr8 87315040 87315040 + L1-Ta germline . no 170 .
srip133467 chr9 32463895 32463895 - L1-Ta germline . no 170 DDX58
srip133701 chr9 35883708 35883708 + L1-Ta germline . no 170 .
srip134515 chr9 94058488 94058488 - L1-Ta germline . no 170 AUH
srip140453 chrX 111557750 111557750 - L1-Ta germline . no 170 ZCCHC16