euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

50 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip5042 chr1 169524859 169524859 + L1-Ta germline . no 167 F5
srip8006 chr10 19216652 19216652 + L1-Ta germline validated no 167 .
srip8438 chr10 25707687 25707687 - L1-Ta germline . no 167 GPR158
srip8658 chr10 27775762 27775762 + L1-Ta germline . no 167 .
srip18046 chr11 110377879 110377879 - L1-Ta germline validated no 167 .
srip20730 chr12 28226413 28226413 - L1-Ta germline validated no 167 .
srip29062 chr13 61462336 61462336 - L1-Ta germline . no 167 .
srip29634 chr13 61734485 61734485 + L1-Ta germline . no 167 .
srip30646 chr13 78693222 78693222 + L1-Ta germline . no 167 .
srip35325 chr14 30525243 30525243 + L1-Ta germline . no 167 .
srip36049 chr14 36674760 36674760 + L1-Ta germline . no 167 .
srip41649 chr15 61328974 61328974 - L1-Ta germline . no 167 RORA
srip52813 chr2 7050603 7050603 + L1-Ta germline . no 167 .
srip53450 chr2 23191000 23191000 - L1-Ta germline . no 167 .
srip54232 chr2 36570243 36570243 - L1-Ta germline . no 167 .
srip63450 chr20 16479495 16479495 - L1-Ta germline . no 167 KIF16B
srip65605 chr21 17134461 17134461 + L1-Ta germline . no 167 USP25
srip66048 chr21 19517313 19517313 - L1-Ta germline . no 167 .
srip67863 chr22 22715602 22715602 + L1-Ta germline . no 167 IGL@
srip70454 chr3 20748896 20748896 - L1-Ta germline . no 167 .
srip72757 chr3 55788580 55788580 + L1-Ta germline . no 167 ERC2
srip74439 chr3 80590163 80590163 - L1-Ta germline . no 167 .
srip74851 chr3 82144854 82144854 - L1-Ta germline . no 167 .
srip75094 chr3 84433395 84433395 + L1-Ta germline . no 167 .
srip75619 chr3 85576568 85576568 + L1-Ta germline . no 167 CADM2
srip80419 chr3 176091333 176091333 + L1-Ta germline . no 167 .
srip81539 chr3 186372141 186372141 + L1-Ta germline . no 167 .
srip82408 chr4 10632679 10632679 - L1-Ta germline . no 167 CLNK
srip84902 chr4 47007790 47007790 - L1-Ta germline . no 167 .
srip85831 chr4 58917529 58917529 - L1-Ta germline . no 167 .
srip92791 chr4 138177325 138177325 + L1-Ta germline . no 167 .
srip93375 chr4 152732807 152732807 - L1-Ta germline . no 167 .
srip100791 chr5 89450781 89450781 + L1-Ta germline . no 167 .
srip103776 chr5 137014775 137014775 - L1-Ta germline . no 167 KLHL3
srip105811 chr5 164495144 164495144 - L1-Ta germline . no 167 LOC100507193
srip107566 chr6 13503049 13503049 + L1-Ta germline . no 167 .
srip109555 chr6 63368207 63368207 + L1-Ta germline . no 167 .
srip113341 chr6 123853938 123853938 - L1-Ta germline . no 167 TRDN
srip113789 chr6 142450101 142450101 - L1-Ta germline . no 167 .
srip119873 chr7 84901724 84901724 - L1-Ta germline . no 167 .
srip121805 chr7 107829263 107829263 + L1-Ta germline . no 167 NRCAM
srip122257 chr7 110484749 110484749 + L1-Ta germline . no 167 IMMP2L
srip127342 chr8 72399221 72399221 - L1-Ta germline . no 167 .
srip127576 chr8 75723722 75723722 + L1-Ta germline . no 167 .
srip128084 chr8 84573987 84573987 + L1-Ta germline . no 167 .
srip128256 chr8 87315040 87315040 + L1-Ta germline . no 167 .
srip130737 chr9 5491418 5491418 + L1-Ta germline . no 167 .
srip133464 chr9 32463895 32463895 - L1-Ta germline . no 167 DDX58
srip133698 chr9 35883708 35883708 + L1-Ta germline . no 167 .
srip139790 chrX 98264302 98264302 - L1-Ta germline . no 167 .