euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

46 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip5041 chr1 169524859 169524859 + L1-Ta germline . no 166 F5
srip5995 chr1 192262254 192262254 - L1-Ta germline . no 166 .
srip8437 chr10 25707687 25707687 - L1-Ta germline . no 166 GPR158
srip10550 chr10 91717633 91717633 - L1-Ta germline . no 166 .
srip26364 chr12 126802929 126802929 - L1-Ta germline . no 166 .
srip29864 chr13 65549225 65549225 - L1-Ta germline . no 166 .
srip31445 chr13 85871602 85871602 - L1-Ta germline . no 166 .
srip36048 chr14 36674760 36674760 + L1-Ta germline . no 166 .
srip45189 chr16 32525614 32525614 - L1-Ta germline . no 166 .
srip47376 chr17 28398313 28398313 + L1-Ta germline . no 166 EFCAB5
srip50149 chr18 50097742 50097742 - L1-Ta germline . no 166 DCC
srip50354 chr18 51425726 51425726 - L1-Ta germline . no 166 .
srip50731 chr18 51762730 51762730 - L1-Ta germline . no 166 .
srip51439 chr18 70740957 70740957 - L1-Ta germline . no 166 .
srip53449 chr2 23191000 23191000 - L1-Ta germline . no 166 .
srip55811 chr2 79929388 79929388 + L1-Ta germline . no 166 CTNNA2
srip60496 chr2 181000540 181000540 + L1-Ta germline . no 166 .
srip62361 chr2 230341559 230341559 + L1-Ta germline . no 166 DNER
srip73430 chr3 59852903 59852903 + L1-Ta germline . no 166 FHIT
srip74053 chr3 79216313 79216313 + L1-Ta germline . no 166 ROBO1
srip74438 chr3 80590163 80590163 - L1-Ta germline . no 166 .
srip80418 chr3 176091333 176091333 + L1-Ta germline . no 166 .
srip81538 chr3 186372141 186372141 + L1-Ta germline . no 166 .
srip82668 chr4 15872169 15872169 - L1-Ta germline . no 166 .
srip85830 chr4 58917529 58917529 - L1-Ta germline . no 166 .
srip86658 chr4 69572739 69572739 - L1-Ta germline . no 166 LOC728811
srip89609 chr4 110248316 110248316 - L1-Ta germline . no 166 .
srip96802 chr5 18071545 18071545 + L1-Ta germline . no 166 .
srip100145 chr5 88350559 88350559 - L1-Ta germline . no 166 .
srip100790 chr5 89450781 89450781 + L1-Ta germline . no 166 .
srip102274 chr5 109480258 109480258 - L1-Ta germline . no 166 .
srip103775 chr5 137014775 137014775 - L1-Ta germline . no 166 KLHL3
srip107565 chr6 13503049 13503049 + L1-Ta germline . no 166 .
srip108349 chr6 45934077 45934077 + L1-Ta germline . no 166 CLIC5
srip113788 chr6 142450101 142450101 - L1-Ta germline . no 166 .
srip117499 chr7 52789472 52789472 + L1-Ta germline . no 166 .
srip120239 chr7 85044737 85044737 + L1-Ta germline . no 166 .
srip120383 chr7 86719213 86719213 - L1-Ta germline . no 166 .
srip121804 chr7 107829263 107829263 + L1-Ta germline . no 166 NRCAM
srip122599 chr7 119446561 119446561 - L1-Ta germline . no 166 .
srip127341 chr8 72399221 72399221 - L1-Ta germline . no 166 .
srip130450 chr8 137943705 137943705 - L1-Ta germline . no 166 .
srip132408 chr9 30495887 30495887 - L1-Ta germline . no 166 .
srip133463 chr9 32463895 32463895 - L1-Ta germline . no 166 DDX58
srip133697 chr9 35883708 35883708 + L1-Ta germline . no 166 .
srip137620 chrX 57806439 57806439 - L1-Ta germline . no 166 .