euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

62 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip8436 chr10 25707687 25707687 - L1-Ta germline . no 165 GPR158
srip10549 chr10 91717633 91717633 - L1-Ta germline . no 165 .
srip12984 chr11 26159992 26159992 - L1-Ta germline . no 165 .
srip25404 chr12 114770502 114770502 - L1-Ta germline . no 165 .
srip26363 chr12 126802929 126802929 - L1-Ta germline . no 165 .
srip29863 chr13 65549225 65549225 - L1-Ta germline . no 165 .
srip31444 chr13 85871602 85871602 - L1-Ta germline . no 165 .
srip36047 chr14 36674760 36674760 + L1-Ta germline . no 165 .
srip37864 chr14 67419864 67419864 - L1-Ta germline . no 165 GPHN
srip44484 chr16 27100504 27100504 + L1-Ta germline . no 165 .
srip44485 chr16 27100550 27100776 . unknown somatic validated no 165 .
srip47375 chr17 28398313 28398313 + L1-Ta germline . no 165 EFCAB5
srip50148 chr18 50097742 50097742 - L1-Ta germline . no 165 DCC
srip50353 chr18 51425726 51425726 - L1-Ta germline . no 165 .
srip50730 chr18 51762730 51762730 - L1-Ta germline . no 165 .
srip51438 chr18 70740957 70740957 - L1-Ta germline . no 165 .
srip53448 chr2 23191000 23191000 - L1-Ta germline . no 165 .
srip54636 chr2 42051404 42051404 + L1-Ta germline . no 165 .
srip55810 chr2 79929388 79929388 + L1-Ta germline . no 165 CTNNA2
srip57272 chr2 109450686 109450686 - L1-Ta germline . no 165 CCDC138
srip60495 chr2 181000540 181000540 + L1-Ta germline . no 165 .
srip66884 chr21 29069171 29069171 + L1-Ta germline . no 165 .
srip73429 chr3 59852903 59852903 + L1-Ta germline . no 165 FHIT
srip74052 chr3 79216313 79216313 + L1-Ta germline . no 165 ROBO1
srip74437 chr3 80590163 80590163 - L1-Ta germline . no 165 .
srip80417 chr3 176091333 176091333 + L1-Ta germline . no 165 .
srip81537 chr3 186372141 186372141 + L1-Ta germline . no 165 .
srip82667 chr4 15872169 15872169 - L1-Ta germline . no 165 .
srip84901 chr4 47007790 47007790 - L1-Ta germline . no 165 .
srip85829 chr4 58917529 58917529 - L1-Ta germline . no 165 .
srip86604 chr4 69364601 69364601 + L1-Ta germline . no 165 .
srip86657 chr4 69572739 69572739 - L1-Ta germline . no 165 LOC728811
srip89608 chr4 110248316 110248316 - L1-Ta germline . no 165 .
srip90004 chr4 112628973 112628973 + L1-Ta germline . no 165 .
srip96801 chr5 18071545 18071545 + L1-Ta germline . no 165 .
srip96989 chr5 23070278 23070278 + L1-Ta germline . no 165 .
srip99115 chr5 57279517 57279517 + L1-Ta germline . no 165 .
srip100144 chr5 88350559 88350559 - L1-Ta germline . no 165 .
srip101076 chr5 96866407 96866407 + L1-Ta germline . no 165 .
srip102273 chr5 109480258 109480258 - L1-Ta germline . no 165 .
srip103774 chr5 137014775 137014775 - L1-Ta germline . no 165 KLHL3
srip107564 chr6 13503049 13503049 + L1-Ta germline . no 165 .
srip108348 chr6 45934077 45934077 + L1-Ta germline . no 165 CLIC5
srip111094 chr6 77980650 77980650 - L1-Ta germline . no 165 .
srip112192 chr6 91711160 91711313 . unknown somatic validated no 165 .
srip113787 chr6 142450101 142450101 - L1-Ta germline . no 165 .
srip117498 chr7 52789472 52789472 + L1-Ta germline . no 165 .
srip120238 chr7 85044737 85044737 + L1-Ta germline . no 165 .
srip120382 chr7 86719213 86719213 - L1-Ta germline . no 165 .
srip121803 chr7 107829263 107829263 + L1-Ta germline . no 165 NRCAM
srip122598 chr7 119446561 119446561 - L1-Ta germline . no 165 .
srip124054 chr8 4452894 4452894 - L1-Ta germline . no 165 CSMD1
srip127340 chr8 72399221 72399221 - L1-Ta germline . no 165 .
srip128255 chr8 87315040 87315040 + L1-Ta germline . no 165 .
srip129492 chr8 115881781 115881781 + L1-Ta germline . no 165 .
srip130449 chr8 137943705 137943705 - L1-Ta germline . no 165 .
srip132407 chr9 30495887 30495887 - L1-Ta germline . no 165 .
srip133462 chr9 32463895 32463895 - L1-Ta germline . no 165 DDX58
srip133696 chr9 35883708 35883708 + L1-Ta germline . no 165 .
srip137619 chrX 57806439 57806439 - L1-Ta germline . no 165 .
srip140451 chrX 111557750 111557750 - L1-Ta germline . no 165 ZCCHC16
srip141970 chrX 140515258 140515258 - L1-Ta germline . no 165 .