euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

62 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip7004 chr1 225393576 225393576 - L1-Ta germline . no 164 DNAH14
srip8005 chr10 19216652 19216652 + L1-Ta germline validated no 164 .
srip8435 chr10 25707687 25707687 - L1-Ta germline . no 164 GPR158
srip8657 chr10 27775762 27775762 + L1-Ta germline . no 164 .
srip10548 chr10 91717633 91717633 - L1-Ta germline . no 164 .
srip11218 chr10 110453470 110453470 + L1-Ta germline . no 164 .
srip11956 chr10 130625059 130625059 + L1-Ta germline . no 164 .
srip13986 chr11 40841271 40841271 + L1-Ta germline . no 164 .
srip20729 chr12 28226413 28226413 - L1-Ta germline validated no 164 .
srip25184 chr12 97365530 97365530 - L1-Ta germline . no 164 .
srip29633 chr13 61734485 61734485 + L1-Ta germline . no 164 .
srip30396 chr13 72968682 72968682 + L1-Ta germline . no 164 .
srip30435 chr13 74613207 74613207 - L1-Ta germline . no 164 KLF12
srip36046 chr14 36674760 36674760 + L1-Ta germline . no 164 .
srip38162 chr14 71197799 71197799 + L1-Ta germline . no 164 MAP3K9
srip43413 chr15 100931161 100931161 - L1-Ta germline . no 164 .
srip47997 chr17 61281455 61281455 - L1-Ta germline . no 164 TANC2
srip50147 chr18 50097742 50097742 - L1-Ta germline . no 164 DCC
srip51674 chr18 74515287 74515287 - L1-Ta germline . no 164 LOC100131655
srip53447 chr2 23191000 23191000 - L1-Ta germline . no 164 .
srip53932 chr2 35879354 35879354 + L1-Ta germline . no 164 .
srip54231 chr2 36570243 36570243 - L1-Ta germline . no 164 .
srip54635 chr2 42051404 42051404 + L1-Ta germline . no 164 .
srip54929 chr2 53460052 53460052 + L1-Ta germline . no 164 .
srip56906 chr2 106163164 106163164 + L1-Ta germline . no 164 .
srip60494 chr2 181000540 181000540 + L1-Ta germline . no 164 .
srip62360 chr2 230341559 230341559 + L1-Ta germline . no 164 DNER
srip63449 chr20 16479495 16479495 - L1-Ta germline . no 164 KIF16B
srip66047 chr21 19517313 19517313 - L1-Ta germline . no 164 .
srip67453 chr22 22486369 22486369 - L1-Ta germline . no 164 IGL@
srip67862 chr22 22715602 22715602 + L1-Ta germline . no 164 IGL@
srip71934 chr3 38626082 38626082 + L1-Ta germline . no 164 SCN5A
srip72756 chr3 55788580 55788580 + L1-Ta germline . no 164 ERC2
srip73428 chr3 59852903 59852903 + L1-Ta germline . no 164 FHIT
srip75093 chr3 84433395 84433395 + L1-Ta germline . no 164 .
srip75618 chr3 85576568 85576568 + L1-Ta germline . no 164 CADM2
srip77293 chr3 123590726 123590726 + L1-Ta germline . no 164 MYLK
srip80416 chr3 176091333 176091333 + L1-Ta germline . no 164 .
srip85828 chr4 58917529 58917529 - L1-Ta germline . no 164 .
srip86216 chr4 66413937 66413937 + L1-Ta germline . no 164 EPHA5
srip89607 chr4 110248316 110248316 - L1-Ta germline . no 164 .
srip92790 chr4 138177325 138177325 + L1-Ta germline . no 164 .
srip100789 chr5 89450781 89450781 + L1-Ta germline . no 164 .
srip101652 chr5 105935364 105935364 + L1-Ta germline . no 164 .
srip102272 chr5 109480258 109480258 - L1-Ta germline . no 164 .
srip103773 chr5 137014775 137014775 - L1-Ta germline . no 164 KLHL3
srip104846 chr5 154873933 154873933 - L1-Ta germline . no 164 .
srip111093 chr6 77980650 77980650 - L1-Ta germline . no 164 .
srip112801 chr6 102846086 102846086 - L1-Ta germline . no 164 .
srip113786 chr6 142450101 142450101 - L1-Ta germline . no 164 .
srip114450 chr6 148163587 148163587 + L1-Ta germline . no 164 .
srip117497 chr7 52789472 52789472 + L1-Ta germline . no 164 .
srip119872 chr7 84901724 84901724 - L1-Ta germline . no 164 .
srip122256 chr7 110484749 110484749 + L1-Ta germline . no 164 IMMP2L
srip124053 chr8 4452894 4452894 - L1-Ta germline . no 164 CSMD1
srip127011 chr8 72013166 72013166 + L1-Ta germline validated no 164 .
srip127339 chr8 72399221 72399221 - L1-Ta germline . no 164 .
srip128254 chr8 87315040 87315040 + L1-Ta germline . no 164 .
srip129672 chr8 119721703 119721703 - L1-Ta germline . no 164 SAMD12-AS1
srip133461 chr9 32463895 32463895 - L1-Ta germline . no 164 DDX58
srip133695 chr9 35883708 35883708 + L1-Ta germline . no 164 .
srip134699 chr9 100675534 100675534 - L1-Ta germline . no 164 C9orf156