euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

41 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip2466 chr1 95801843 95801843 - L1-Ta germline . no 162 .
srip7413 chr1 242311577 242311577 + L1-Ta germline . no 162 PLD5
srip8434 chr10 25707687 25707687 - L1-Ta germline . no 162 GPR158
srip8655 chr10 27775762 27775762 + L1-Ta germline . no 162 .
srip11216 chr10 110453470 110453470 + L1-Ta germline . no 162 .
srip20727 chr12 28226413 28226413 - L1-Ta germline validated no 162 .
srip26362 chr12 126802929 126802929 - L1-Ta germline . no 162 .
srip29061 chr13 61462336 61462336 - L1-Ta germline . no 162 .
srip29631 chr13 61734485 61734485 + L1-Ta germline . no 162 .
srip31442 chr13 85871602 85871602 - L1-Ta germline . no 162 .
srip31917 chr13 86340149 86340149 - L1-Ta germline . no 162 .
srip36044 chr14 36674760 36674760 + L1-Ta germline . no 162 .
srip38751 chr14 86381810 86381810 - L1-Ta germline . no 162 .
srip50729 chr18 51762730 51762730 - L1-Ta germline . no 162 .
srip54229 chr2 36570243 36570243 - L1-Ta germline . no 162 .
srip54928 chr2 53460052 53460052 + L1-Ta germline . no 162 .
srip60492 chr2 181000540 181000540 + L1-Ta germline . no 162 .
srip66045 chr21 19517313 19517313 - L1-Ta germline . no 162 .
srip66883 chr21 29069171 29069171 + L1-Ta germline . no 162 .
srip70453 chr3 20748896 20748896 - L1-Ta germline . no 162 .
srip74436 chr3 80590163 80590163 - L1-Ta germline . no 162 .
srip80414 chr3 176091333 176091333 + L1-Ta germline . no 162 .
srip81536 chr3 186372141 186372141 + L1-Ta germline . no 162 .
srip92788 chr4 138177325 138177325 + L1-Ta germline . no 162 .
srip100788 chr5 89450781 89450781 + L1-Ta germline . no 162 .
srip107563 chr6 13503049 13503049 + L1-Ta germline . no 162 .
srip111091 chr6 77980650 77980650 - L1-Ta germline . no 162 .
srip113784 chr6 142450101 142450101 - L1-Ta germline . no 162 .
srip117618 chr7 53652502 53652502 - L1-Ta germline . no 162 .
srip118201 chr7 62492930 62492930 + L1-Ta germline . no 162 .
srip119871 chr7 84901724 84901724 - L1-Ta germline . no 162 .
srip120763 chr7 93146611 93146611 - L1-Ta germline . no 162 CALCR
srip123338 chr7 142818664 142818664 + L1-Ta germline . no 162 .
srip124051 chr8 4452894 4452894 - L1-Ta germline . no 162 CSMD1
srip127337 chr8 72399221 72399221 - L1-Ta germline . no 162 .
srip128252 chr8 87315040 87315040 + L1-Ta germline . no 162 .
srip130735 chr9 5491418 5491418 + L1-Ta germline . no 162 .
srip133693 chr9 35883708 35883708 + L1-Ta germline . no 162 .
srip134697 chr9 100675534 100675534 - L1-Ta germline . no 162 C9orf156
srip139789 chrX 98264302 98264302 - L1-Ta germline . no 162 .
srip142093 chrX 151724801 151724801 + L1-Ta germline . no 162 .