euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

62 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip857 chr1 56405398 56405398 - L1-Ta germline validated no 161 LOC100507652
srip2465 chr1 95801843 95801843 - L1-Ta germline . no 161 .
srip7412 chr1 242311577 242311577 + L1-Ta germline . no 161 PLD5
srip8433 chr10 25707687 25707687 - L1-Ta germline . no 161 GPR158
srip8654 chr10 27775762 27775762 + L1-Ta germline . no 161 .
srip8928 chr10 57061279 57061513 . unknown somatic validated no 161 .
srip8929 chr10 57061533 57061533 - L1-Ta germline . no 161 .
srip11215 chr10 110453470 110453470 + L1-Ta germline . no 161 .
srip13847 chr11 36188972 36189173 . unknown somatic validated no 161 LDLRAD3
srip18310 chr11 115308123 115308123 + L1-Ta germline validated no 161 CADM1
srip18311 chr11 115308124 115308552 . unknown somatic validated no 161 CADM1
srip26361 chr12 126802929 126802929 - L1-Ta germline . no 161 .
srip29060 chr13 61462336 61462336 - L1-Ta germline . no 161 .
srip29630 chr13 61734485 61734485 + L1-Ta germline . no 161 .
srip31441 chr13 85871602 85871602 - L1-Ta germline . no 161 .
srip31916 chr13 86340149 86340149 - L1-Ta germline . no 161 .
srip36043 chr14 36674760 36674760 + L1-Ta germline . no 161 .
srip37359 chr14 59220402 59220402 + L1-Ta germline . no 161 .
srip38161 chr14 71197799 71197799 + L1-Ta germline . no 161 MAP3K9
srip38750 chr14 86381810 86381810 - L1-Ta germline . no 161 .
srip47373 chr17 28398313 28398313 + L1-Ta germline . no 161 EFCAB5
srip48493 chr17 69774387 69774387 - L1-Ta germline . no 161 .
srip50352 chr18 51425726 51425726 - L1-Ta germline . no 161 .
srip50728 chr18 51762730 51762730 - L1-Ta germline . no 161 .
srip53445 chr2 23191000 23191000 - L1-Ta germline . no 161 .
srip54228 chr2 36570243 36570243 - L1-Ta germline . no 161 .
srip54927 chr2 53460052 53460052 + L1-Ta germline . no 161 .
srip60491 chr2 181000540 181000540 + L1-Ta germline . no 161 .
srip73426 chr3 59852903 59852903 + L1-Ta germline . no 161 FHIT
srip75616 chr3 85576568 85576568 + L1-Ta germline . no 161 CADM2
srip80413 chr3 176091333 176091333 + L1-Ta germline . no 161 .
srip81535 chr3 186372141 186372141 + L1-Ta germline . no 161 .
srip92787 chr4 138177325 138177325 + L1-Ta germline . no 161 .
srip94110 chr4 166053613 166054061 . unknown somatic validated no 161 .
srip94111 chr4 166053646 166053646 + L1-Ta germline validated no 161 .
srip96284 chr5 11391263 11391263 + L1-Ta germline . no 161 CTNND2
srip100787 chr5 89450781 89450781 + L1-Ta germline . no 161 .
srip102270 chr5 109480258 109480258 - L1-Ta germline . no 161 .
srip103771 chr5 137014775 137014775 - L1-Ta germline . no 161 KLHL3
srip105810 chr5 164495144 164495144 - L1-Ta germline . no 161 LOC100507193
srip105904 chr5 166044346 166044692 . unknown somatic validated no 161 .
srip107562 chr6 13503049 13503049 + L1-Ta germline . no 161 .
srip111090 chr6 77980650 77980650 - L1-Ta germline . no 161 .
srip113340 chr6 123853938 123853938 - L1-Ta germline . no 161 TRDN
srip113783 chr6 142450101 142450101 - L1-Ta germline . no 161 .
srip114448 chr6 148163587 148163587 + L1-Ta germline . no 161 .
srip117617 chr7 53652502 53652502 - L1-Ta germline . no 161 .
srip118200 chr7 62492930 62492930 + L1-Ta germline . no 161 .
srip119870 chr7 84901724 84901724 - L1-Ta germline . no 161 .
srip120762 chr7 93146611 93146611 - L1-Ta germline . no 161 CALCR
srip121801 chr7 107829263 107829263 + L1-Ta germline . no 161 NRCAM
srip124893 chr8 17854714 17854998 . unknown somatic validated no 161 PCM1
srip126328 chr8 57161893 57161893 + L1-Ta germline . no 161 .
srip127336 chr8 72399221 72399221 - L1-Ta germline . no 161 .
srip128251 chr8 87315040 87315040 + L1-Ta germline . no 161 .
srip130734 chr9 5491418 5491418 + L1-Ta germline . no 161 .
srip133459 chr9 32463895 32463895 - L1-Ta germline . no 161 DDX58
srip133692 chr9 35883708 35883708 + L1-Ta germline . no 161 .
srip134696 chr9 100675534 100675534 - L1-Ta germline . no 161 C9orf156
srip139788 chrX 98264302 98264302 - L1-Ta germline . no 161 .
srip141968 chrX 140515258 140515258 - L1-Ta germline . no 161 .
srip142092 chrX 151724801 151724801 + L1-Ta germline . no 161 .