euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

203 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip89 chr1 17229479 17229479 - L1-Ta germline . no 185 .
srip1994 chr1 81855783 81855783 + L1-Ta germline . no 185 .
srip3197 chr1 105028226 105028226 + L1-Ta germline . no 185 .
srip3323 chr1 106396428 106396428 - L1-Ta germline . no 185 .
srip4033 chr1 149216797 149216797 + L1-Ta germline . no 185 .
srip4739 chr1 165553136 165553136 - L1-Ta germline . no 185 .
srip5406 chr1 179575362 179575362 - L1-Ta germline . no 185 TDRD5
srip6358 chr1 207579511 207579511 + L1-Ta germline . no 185 .
srip7001 chr1 225393576 225393576 - L1-Ta germline . no 185 DNAH14
srip7400 chr1 242311577 242311577 + L1-Ta germline validated no 185 PLD5
srip7454 chr1 248454039 248454039 - L1-pre-Ta germline . no 185 .
srip7814 chr10 19065785 19065785 - L1-Ta germline . no 185 .
srip8415 chr10 25707687 25707687 - L1-Ta germline . no 185 GPR158
srip8661 chr10 28259909 28259909 + L1-Ta germline . no 185 ARMC4
srip8812 chr10 42465627 42465627 + L1-Ta germline . no 185 .
srip9677 chr10 74767506 74767506 - L1-Ta germline . no 185 P4HA1
srip11201 chr10 110453470 110453470 + L1-Ta germline . no 185 .
srip12861 chr11 25123354 25123354 - L1-Ta germline . no 185 .
srip13784 chr11 33670123 33670123 + L1-Ta germline . no 185 C11orf41
srip13852 chr11 36558472 36558472 - L1-Ta germline . no 185 .
srip14353 chr11 41831811 41831811 - L1-Ta germline . no 185 .
srip14751 chr11 48360753 48360753 - L1-Ta germline . no 185 .
srip15145 chr11 55870759 55870759 + L1-Ta germline . no 185 .
srip17200 chr11 94684368 94684368 + L1-Ta germline . no 185 .
srip17343 chr11 97434311 97434311 - L1-Ta germline . no 185 .
srip17759 chr11 104556130 104556130 - L1-Ta germline . no 185 .
srip19309 chr11 134305648 134305648 - L1-Ta germline . no 185 .
srip20968 chr12 33325793 33325793 - L1-Ta germline . no 185 .
srip21156 chr12 34017325 34017325 - L1-Ta germline . no 185 .
srip21738 chr12 38035076 38035076 + L1-Ta germline . no 185 .
srip22250 chr12 43256986 43256986 - L1-Ta germline . no 185 .
srip24422 chr12 84955216 84955216 - L1-Ta germline . no 185 .
srip25124 chr12 95808527 95808527 - L1-Ta germline . no 185 .
srip25249 chr12 98669929 98669929 + L1-Ta germline . no 185 .
srip25997 chr12 118186926 118186926 + L1-Ta germline . no 185 KSR2
srip27006 chr13 22489805 22489805 + L1-Ta germline . no 185 .
srip27649 chr13 35787766 35787766 - L1-Ta germline . no 185 NBEA
srip28012 chr13 42771403 42771403 + L1-Ta germline . no 185 DGKH
srip28038 chr13 42970481 42970481 - L1-Ta germline . no 185 .
srip28165 chr13 48856541 48856541 + L1-Ta germline . no 185 .
srip29040 chr13 61462336 61462336 - L1-Ta germline . no 185 .
srip29614 chr13 61734485 61734485 + L1-Ta germline . no 185 .
srip29858 chr13 65549225 65549225 - L1-Ta germline . no 185 .
srip30642 chr13 78693222 78693222 + L1-Ta germline . no 185 .
srip31012 chr13 79259793 79259793 - L1-Ta germline . no 185 .
srip31420 chr13 85871602 85871602 - L1-Ta germline . no 185 .
srip32010 chr13 86340153 86340153 - L1-Ta germline . no 185 .
srip32190 chr13 88475686 88475686 - L1-Ta germline . no 185 .
srip33487 chr13 104296223 104296223 - L1-Ta germline . no 185 .
srip33644 chr13 104395943 104395943 - L1-Ta germline . no 185 .
srip33786 chr13 105280146 105280146 - L1-Ta germline . no 185 .
srip34278 chr14 19000969 19000969 + L1-Ta germline . no 185 .
srip35240 chr14 28301261 28301261 + L1-Ta germline . no 185 .
srip35323 chr14 30525243 30525243 + L1-Ta germline . no 185 .
srip35457 chr14 31150809 31150809 - L1-Ta germline . no 185 SCFD1
srip36023 chr14 36674760 36674760 + L1-Ta germline . no 185 .
srip36074 chr14 37769602 37769602 - L1-Ta germline . no 185 MIPOL1
srip37048 chr14 49621405 49621405 + L1-Ta germline . no 185 .
srip37144 chr14 52667758 52667758 - L1-Ta germline . no 185 .
srip37399 chr14 59522426 59522426 - L1-Ta germline . no 185 .
srip38150 chr14 71197799 71197799 + L1-Ta germline . no 185 MAP3K9
srip38312 chr14 78729953 78729953 - L1-Ta germline . no 185 .
srip38605 chr14 86381796 86381796 - L1-Ta germline . no 185 .
srip39748 chr15 37707890 37707890 - L1-Ta germline . no 185 .
srip40206 chr15 47507329 47507329 - L1-Ta germline . no 185 SEMA6D
srip41642 chr15 61328974 61328974 - L1-Ta germline . no 185 RORA
srip41695 chr15 62064901 62064901 + L1-Ta germline . no 185 .
srip43393 chr15 100931161 100931161 - L1-Ta germline . no 185 .
srip44079 chr16 17755305 17755305 - L1-Ta germline . no 185 .
srip44768 chr16 32523893 32523893 - L1-Ta germline . no 185 .
srip45049 chr16 32525611 32525611 - L1-Ta germline . no 185 .
srip45475 chr16 33992430 33992430 + L1-Ta germline . no 185 .
srip45864 chr16 61079188 61079188 + L1-Ta germline . no 185 .
srip47351 chr17 28398313 28398313 + L1-Ta germline . no 185 EFCAB5
srip48163 chr17 64637294 64637294 + L1-Ta germline . no 185 PRKCA
srip48438 chr17 68357409 68357409 + L1-Ta germline . no 185 .
srip49073 chr18 25935379 25935379 - L1-Ta germline . no 185 .
srip50713 chr18 51762730 51762730 - L1-Ta germline . no 185 .
srip51819 chr18 74960068 74960068 - L1-Ta germline . no 185 .
srip53427 chr2 23191000 23191000 - L1-Ta germline . no 185 .
srip53729 chr2 33091966 33091966 - L1-Ta germline . no 185 LINC00486
srip54216 chr2 36570243 36570243 - L1-Ta germline . no 185 .
srip54591 chr2 42051403 42051403 + L1-Ta germline . no 185 .
srip54913 chr2 53460052 53460052 + L1-Ta germline . no 185 .
srip56497 chr2 83188325 83188325 + L1-Ta germline . no 185 .
srip57807 chr2 132868182 132868182 - L1-Ta germline . no 185 .
srip58205 chr2 141852908 141852908 - L1-Ta germline . no 185 LRP1B
srip58574 chr2 144010793 144010793 + L1-Ta germline . no 185 ARHGAP15
srip58671 chr2 144910831 144910831 - L1-Ta germline . no 185 GTDC1
srip59604 chr2 156527822 156527822 + L1-Ta germline . no 185 .
srip59882 chr2 173854096 173854096 - L1-Ta germline . no 185 RAPGEF4
srip60127 chr2 178676245 178676245 - L1-Ta germline . no 185 PDE11A
srip61134 chr2 199779914 199779914 + L1-Ta germline . no 185 .
srip61242 chr2 201638085 201638085 + L1-Ta germline . no 185 AOX2P
srip61916 chr2 221278223 221278223 - L1-Ta germline . no 185 .
srip62613 chr2 235519794 235519794 + L1-Ta germline . no 185 .
srip63087 chr20 7292200 7292200 + L1-Ta germline . no 185 .
srip63442 chr20 16479495 16479495 - L1-Ta germline . no 185 KIF16B
srip63936 chr20 22702082 22702082 - L1-Ta germline . no 185 .
srip64004 chr20 25844027 25844027 + L1-Ta germline . no 185 .
srip64791 chr20 41952105 41952105 - L1-Ta germline . no 185 .
srip66025 chr21 19517313 19517313 - L1-Ta germline . no 185 .
srip66861 chr21 29069171 29069171 + L1-Ta germline . no 185 .
srip67830 chr22 22715588 22715588 + L1-Ta germline . no 185 IGL@
srip69633 chr3 656435 656435 - L1-Ta germline . no 185 .
srip70063 chr3 17409573 17409573 - L1-Ta germline . no 185 TBC1D5
srip71919 chr3 38626082 38626082 + L1-Ta germline . no 185 SCN5A
srip73406 chr3 59852903 59852903 + L1-Ta germline . no 185 FHIT
srip75089 chr3 84433395 84433395 + L1-Ta germline . no 185 .
srip75606 chr3 85576568 85576568 + L1-Ta germline . no 185 CADM2
srip76810 chr3 119046413 119046413 + L1-Ta germline . no 185 ARHGAP31
srip77272 chr3 123590726 123590726 + L1-Ta germline . no 185 MYLK
srip78593 chr3 151148544 151148544 - L1-Ta germline . no 185 MED12L
srip78847 chr3 151688088 151688088 - L1-Ta germline . no 185 .
srip80218 chr3 175677970 175677970 - L1-Ta germline . no 185 .
srip80389 chr3 176091333 176091333 + L1-Ta germline . no 185 .
srip80447 chr3 180091672 180091672 + L1-Ta germline . no 185 .
srip80890 chr3 181689145 181689145 - L1-Ta germline . no 185 .
srip81639 chr3 187835309 187835309 - L1-Ta germline . no 185 .
srip83116 chr4 18162689 18162689 - L1-Ta germline . no 185 .
srip83338 chr4 20246382 20246382 + L1-Ta germline . no 185 .
srip84879 chr4 47007790 47007790 - L1-Ta germline . no 185 .
srip86192 chr4 66413932 66413932 + L1-Ta germline . no 185 EPHA5
srip86613 chr4 69572737 69572737 - L1-Ta germline . no 185 LOC728811
srip89591 chr4 110248316 110248316 - L1-Ta germline . no 185 .
srip89664 chr4 110248332 110248332 - L1-Ta germline . no 185 .
srip92215 chr4 134596423 134596423 + L1-Ta germline . no 185 .
srip93104 chr4 147225296 147225296 + L1-Ta germline . no 185 SLC10A7
srip95367 chr4 190659695 190659695 + L1-Ta germline . no 185 .
srip95469 chr5 1645773 1645773 + L1-Ta germline . no 185 .
srip96048 chr5 8749515 8749515 + L1-Ta germline . no 185 .
srip96357 chr5 11391276 11391276 + L1-Ta germline . no 185 CTNND2
srip97033 chr5 24207830 24207830 - L1-Ta germline . no 185 .
srip97950 chr5 33633348 33633348 - L1-Ta germline . no 185 ADAMTS12
srip98311 chr5 41428535 41428535 + L1-Ta germline . no 185 PLCXD3
srip98356 chr5 41602028 41602028 + L1-Ta germline . no 185 .
srip98598 chr5 46396964 46396964 + L1-Ta germline . no 185 .
srip100078 chr5 84239673 84239673 - L1-Ta germline . no 185 .
srip100763 chr5 89450781 89450781 + L1-Ta germline . no 185 .
srip101060 chr5 96866407 96866407 + L1-Ta germline . no 185 .
srip102249 chr5 109480258 109480258 - L1-Ta germline . no 185 .
srip102524 chr5 109567542 109567542 + L1-Ta germline . no 185 .
srip103370 chr5 125040045 125040045 + L1-Ta germline . no 185 .
srip103760 chr5 137014775 137014775 - L1-Ta germline . no 185 KLHL3
srip104835 chr5 154873933 154873933 - L1-Ta germline . no 185 .
srip104890 chr5 155333908 155333908 - L1-Ta germline . no 185 .
srip105571 chr5 159351199 159351199 - L1-Ta germline . no 185 ADRA1B
srip105804 chr5 164495144 164495144 - L1-Ta germline . no 185 LOC100507193
srip107081 chr6 13191033 13191033 + L1-Ta germline . no 185 PHACTR1
srip107944 chr6 32457289 32457289 + L1-Ta germline . no 185 .
srip108010 chr6 32509106 32509106 - L1-Ta germline . no 185 .
srip108069 chr6 32589567 32589567 + L1-Ta germline . no 185 .
srip108269 chr6 45852697 45852697 - L1-Ta germline . no 185 .
srip109182 chr6 61942547 61942547 - L1-Ta germline . no 185 .
srip109948 chr6 68112755 68112755 - L1-Ta germline . no 185 .
srip111071 chr6 77980650 77980650 - L1-Ta germline . no 185 .
srip112174 chr6 91669521 91669521 - L1-Ta germline . no 185 .
srip113013 chr6 114091140 114091140 + L1-Ta germline . no 185 LOC100652953
srip113338 chr6 123853938 123853938 - L1-Ta germline . no 185 TRDN
srip113761 chr6 142450101 142450101 - L1-Ta germline . no 185 .
srip114872 chr6 154215663 154215663 + L1-Ta germline . no 185 .
srip115069 chr6 157968737 157968737 - L1-Ta germline . no 185 ZDHHC14
srip116175 chr7 8886715 8886715 + L1-Ta germline . no 185 .
srip116372 chr7 17094714 17094714 + L1-Ta germline . no 185 .
srip117003 chr7 42529864 42529864 - L1-Ta germline . no 185 .
srip117959 chr7 61778308 61778308 - L1-Ta germline . no 185 .
srip118182 chr7 62492930 62492930 + L1-Ta germline . no 185 .
srip119848 chr7 84901724 84901724 - L1-Ta germline . no 185 .
srip120220 chr7 85044737 85044737 + L1-Ta germline . no 185 .
srip121782 chr7 107829263 107829263 + L1-Ta germline . no 185 NRCAM
srip121986 chr7 108325661 108325661 + L1-Ta germline . no 185 .
srip122457 chr7 112789623 112789623 - L1-Ta germline . no 185 .
srip124035 chr8 4452894 4452894 - L1-Ta germline . no 185 CSMD1
srip124549 chr8 5829283 5829283 - L1-Ta germline . no 185 .
srip125048 chr8 21496230 21496230 + L1-Ta germline . no 185 .
srip126911 chr8 67381885 67381885 - L1-Ta germline . no 185 .
srip127320 chr8 72399221 72399221 - L1-Ta germline . no 185 .
srip128011 chr8 83740679 83740679 + L1-Ta germline . no 185 .
srip128231 chr8 87315040 87315040 + L1-Ta germline . no 185 .
srip128764 chr8 107557032 107557032 - L1-Ta germline . no 185 OXR1
srip128845 chr8 111632621 111632621 + L1-Ta germline . no 185 .
srip129152 chr8 115788580 115788580 - L1-Ta germline . no 185 .
srip129485 chr8 115881781 115881781 + L1-Ta germline . no 185 .
srip130100 chr8 131041219 131041219 + L1-Ta germline . no 185 .
srip130348 chr8 134972242 134972242 + L1-pre-Ta germline . no 185 .
srip131128 chr9 6290494 6290494 + L1-Ta germline . no 185 .
srip133435 chr9 32463894 32463894 - L1-Ta germline . no 185 DDX58
srip133668 chr9 35883708 35883708 + L1-Ta germline . no 185 .
srip133703 chr9 35883754 35883754 + L1-Ta germline . no 185 .
srip135040 chr9 105073654 105073654 + L1-Ta germline . no 185 .
srip135979 chr9 118083880 118083880 - L1-Ta germline . no 185 DEC1
srip136058 chr9 124790572 124790572 + L1-Ta germline . no 185 TTLL11
srip136155 chr9 136105857 136105857 - L1-Ta germline . no 185 .
srip136287 chrX 4659603 4659603 - L1-Ta germline . no 185 .
srip136772 chrX 24384651 24384651 - L1-Ta germline . no 185 .
srip137586 chrX 55585160 55585160 - L1-Ta germline . no 185 .
srip139129 chrX 78665197 78665197 + L1-Ta germline . no 185 .
srip139419 chrX 85781782 85781782 + L1-Ta germline . no 185 DACH2
srip140073 chrX 102363174 102363174 + L1-Ta germline . no 185 .
srip140296 chrX 111229559 111229559 - L1-Ta germline . no 185 TRPC5
srip141393 chrX 129525281 129525281 - L1-Ta germline . no 185 .
srip142168 chrX 154790189 154790189 + L1-Ta germline . no 185 TMLHE
srip142213 chrY 9951878 9951878 - L1-pre-Ta germline . no 185 .