euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

232 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip508 chr1 42483961 42483961 + L1-Ta germline . no 183 HIVEP3
srip1925 chr1 75192907 75192907 - L1-Ta germline validated no 183 CRYZ
srip1992 chr1 81855783 81855783 + L1-Ta germline . no 183 .
srip3195 chr1 105028226 105028226 + L1-Ta germline . no 183 .
srip4031 chr1 149216797 149216797 + L1-Ta germline . no 183 .
srip5028 chr1 169524859 169524859 + L1-Ta germline . no 183 F5
srip5545 chr1 183969672 183969672 - L1-Ta germline . no 183 GLT25D2
srip5984 chr1 192262254 192262254 - L1-Ta germline . no 183 .
srip6007 chr1 192262268 192262268 - L1-Ta germline . no 183 .
srip6326 chr1 201918258 201918258 + L1-Ta germline . no 183 .
srip6356 chr1 207579511 207579511 + L1-Ta germline . no 183 .
srip6925 chr1 221827821 221827821 - L1-Ta germline . no 183 .
srip7452 chr1 248454039 248454039 - L1-pre-Ta germline . no 183 .
srip7571 chr10 5061314 5061314 - L1-Ta germline . no 183 .
srip8174 chr10 23842058 23842058 - L1-Ta germline . no 183 .
srip8195 chr10 25576935 25576935 - L1-Ta germline . no 183 GPR158
srip8413 chr10 25707687 25707687 - L1-Ta germline . no 183 GPR158
srip8642 chr10 27775762 27775762 + L1-Ta germline . no 183 .
srip9675 chr10 74767506 74767506 - L1-Ta germline . no 183 P4HA1
srip12240 chr11 6812383 6812383 + L1-Ta germline . no 183 .
srip13782 chr11 33670123 33670123 + L1-Ta germline . no 183 C11orf41
srip13850 chr11 36558472 36558472 - L1-Ta germline . no 183 .
srip13902 chr11 37666899 37666899 + L1-Ta germline . no 183 .
srip13991 chr11 41096612 41096612 - L1-Ta germline . yes 183 .
srip14351 chr11 41831811 41831811 - L1-Ta germline . no 183 .
srip14556 chr11 43356955 43356955 + L1-Ta germline . no 183 API5
srip14749 chr11 48360753 48360753 - L1-Ta germline . no 183 .
srip15072 chr11 51525354 51525354 - L1-Ta germline . no 183 .
srip15143 chr11 55870759 55870759 + L1-Ta germline . no 183 .
srip15347 chr11 58171838 58171838 + L1-Ta germline . no 183 .
srip16516 chr11 83652350 83652350 - L1-Ta germline . no 183 DLG2
srip18123 chr11 110567773 110567773 + L1-Ta germline . no 183 ARHGAP20
srip18646 chr11 132398113 132398113 - L1-Ta germline . no 183 OPCML
srip19307 chr11 134305648 134305648 - L1-Ta germline . no 183 .
srip19658 chr12 8105629 8105629 + L1-Ta germline . no 183 .
srip21154 chr12 34017325 34017325 - L1-Ta germline . no 183 .
srip22248 chr12 43256986 43256986 - L1-Ta germline . no 183 .
srip22489 chr12 44542592 44542592 + L1-Ta germline . no 183 TMEM117
srip24420 chr12 84955216 84955216 - L1-Ta germline . no 183 .
srip25122 chr12 95808527 95808527 - L1-Ta germline . no 183 .
srip25634 chr12 117814447 117814447 - L1-Ta germline . no 183 .
srip25995 chr12 118186926 118186926 + L1-Ta germline . no 183 KSR2
srip26757 chr13 21817193 21817193 - L1-Ta germline . no 183 .
srip27004 chr13 22489805 22489805 + L1-Ta germline . no 183 .
srip27477 chr13 27488126 27488126 + L1-Ta germline . no 183 .
srip27652 chr13 36582296 36582296 - L1-Ta germline . no 183 DCLK1
srip28010 chr13 42771403 42771403 + L1-Ta germline . no 183 DGKH
srip28163 chr13 48856541 48856541 + L1-Ta germline . no 183 .
srip29612 chr13 61734485 61734485 + L1-Ta germline . no 183 .
srip29754 chr13 64569855 64569855 - L1-Ta germline . no 183 .
srip31010 chr13 79259793 79259793 - L1-Ta germline . no 183 .
srip31418 chr13 85871602 85871602 - L1-Ta germline . no 183 .
srip32008 chr13 86340153 86340153 - L1-Ta germline . no 183 .
srip32300 chr13 91149409 91149409 - L1-Ta germline . no 183 .
srip33485 chr13 104296223 104296223 - L1-Ta germline . no 183 .
srip33642 chr13 104395943 104395943 - L1-Ta germline . no 183 .
srip33784 chr13 105280146 105280146 - L1-Ta germline . no 183 .
srip34276 chr14 19000969 19000969 + L1-Ta germline . no 183 .
srip35239 chr14 28301261 28301261 + L1-Ta germline . no 183 .
srip35455 chr14 31150809 31150809 - L1-Ta germline . no 183 SCFD1
srip36021 chr14 36674760 36674760 + L1-Ta germline . no 183 .
srip36073 chr14 37769602 37769602 - L1-Ta germline . no 183 MIPOL1
srip37142 chr14 52667758 52667758 - L1-Ta germline . no 183 .
srip37851 chr14 67419863 67419863 - L1-Ta germline . no 183 GPHN
srip38290 chr14 72333719 72333719 - L1-Ta germline . no 183 .
srip38603 chr14 86381796 86381796 - L1-Ta germline . no 183 .
srip41241 chr15 56251153 56251153 + L1-Ta germline . no 183 NEDD4
srip43046 chr15 98622504 98622504 + L1-Ta germline . no 183 .
srip43391 chr15 100931161 100931161 - L1-Ta germline . no 183 .
srip43637 chr16 6793831 6793831 + L1-Ta germline . no 183 RBFOX1
srip44767 chr16 32523893 32523893 - L1-Ta germline . no 183 .
srip45047 chr16 32525611 32525611 - L1-Ta germline . no 183 .
srip45473 chr16 33992430 33992430 + L1-Ta germline . no 183 .
srip45523 chr16 34001600 34001600 + L1-Ta germline . no 183 .
srip45862 chr16 61079188 61079188 + L1-Ta germline . no 183 .
srip46548 chr17 6341644 6341644 - L1-Ta germline . no 183 .
srip47349 chr17 28398313 28398313 + L1-Ta germline . no 183 EFCAB5
srip47581 chr17 32813605 32813605 + L1-Ta germline . no 183 .
srip48436 chr17 68357409 68357409 + L1-Ta germline . no 183 .
srip49222 chr18 27219200 27219200 - L1-Ta germline . no 183 .
srip50340 chr18 51425726 51425726 - L1-Ta germline . no 183 .
srip50711 chr18 51762730 51762730 - L1-Ta germline . no 183 .
srip51003 chr18 59579975 59579975 + L1-Ta germline . no 183 .
srip51817 chr18 74960068 74960068 - L1-Ta germline . no 183 .
srip52805 chr2 7050603 7050603 + L1-Ta germline . no 183 .
srip53107 chr2 21288218 21288218 + L1-Ta germline . no 183 .
srip53720 chr2 29759205 29759205 - L1-Ta germline validated no 183 ALK
srip53728 chr2 33091966 33091966 - L1-Ta germline . no 183 LINC00486
srip53733 chr2 33092073 33092073 - L1-Ta germline . no 183 LINC00486
srip54589 chr2 42051403 42051403 + L1-Ta germline . no 183 .
srip54911 chr2 53460052 53460052 + L1-Ta germline . no 183 .
srip55224 chr2 68049223 68049223 - L1-Ta germline . no 183 .
srip55297 chr2 69168896 69168896 - L1-Ta germline . no 183 .
srip55805 chr2 79929388 79929388 + L1-Ta germline . no 183 CTNNA2
srip56236 chr2 82098043 82098043 + L1-Ta germline . no 183 .
srip56495 chr2 83188325 83188325 + L1-Ta germline . no 183 .
srip56667 chr2 92319790 92319790 - L1-Ta germline . no 183 .
srip56958 chr2 108133313 108133313 + L1-Ta germline . no 183 .
srip57291 chr2 114826303 114826303 + L1-Ta germline . no 183 .
srip57659 chr2 129372166 129372166 + L1-Ta germline . no 183 .
srip57805 chr2 132868182 132868182 - L1-Ta germline . no 183 .
srip58203 chr2 141852908 141852908 - L1-Ta germline . no 183 LRP1B
srip58572 chr2 144010793 144010793 + L1-Ta germline . no 183 ARHGAP15
srip59660 chr2 162748906 162748906 - L1-Ta germline . no 183 SLC4A10
srip59849 chr2 170504673 170504673 + L1-Ta germline . no 183 C2orf77
srip60126 chr2 178676245 178676245 - L1-Ta germline . no 183 PDE11A
srip60485 chr2 181000540 181000540 + L1-Ta germline . no 183 .
srip61240 chr2 201638085 201638085 + L1-Ta germline . no 183 AOX2P
srip63641 chr20 17860937 17860937 + L1-Ta germline . no 183 .
srip64003 chr20 25844027 25844027 + L1-Ta germline . no 183 .
srip64789 chr20 41952105 41952105 - L1-Ta germline . no 183 .
srip66023 chr21 19517313 19517313 - L1-Ta germline . no 183 .
srip66253 chr21 23626191 23626191 - L1-Ta germline . no 183 .
srip66859 chr21 29069171 29069171 + L1-Ta germline . no 183 .
srip69631 chr3 656435 656435 - L1-Ta germline . no 183 .
srip70061 chr3 17409573 17409573 - L1-Ta germline . no 183 TBC1D5
srip71155 chr3 26524464 26524464 - L1-Ta germline . no 183 .
srip71917 chr3 38626082 38626082 + L1-Ta germline . no 183 SCN5A
srip73404 chr3 59852903 59852903 + L1-Ta germline . no 183 FHIT
srip74071 chr3 79605276 79605276 - L1-Ta germline . no 183 ROBO1
srip74424 chr3 80590163 80590163 - L1-Ta germline . no 183 .
srip75604 chr3 85576568 85576568 + L1-Ta germline . no 183 CADM2
srip75829 chr3 86264950 86264950 - L1-Ta germline . no 183 .
srip75917 chr3 89394023 89394023 + L1-Ta germline . no 183 EPHA3
srip76039 chr3 97329539 97329539 + L1-Ta germline . no 183 EPHA6
srip76808 chr3 119046413 119046413 + L1-Ta germline . no 183 ARHGAP31
srip77270 chr3 123590726 123590726 + L1-Ta germline . no 183 MYLK
srip78142 chr3 143121759 143121759 - L1-Ta germline . no 183 SLC9A9
srip78591 chr3 151148544 151148544 - L1-Ta germline . no 183 MED12L
srip78845 chr3 151688088 151688088 - L1-Ta germline . no 183 .
srip79319 chr3 162717306 162717306 + L1-Ta germline . no 183 .
srip79881 chr3 169269964 169269964 + L1-Ta germline . no 183 MECOM
srip79940 chr3 172749118 172749118 - L1-Ta germline . no 183 SPATA16
srip80387 chr3 176091333 176091333 + L1-Ta germline . no 183 .
srip81512 chr3 186372141 186372141 + L1-Ta germline . no 183 .
srip81637 chr3 187835309 187835309 - L1-Ta germline . no 183 .
srip82132 chr3 193354175 193354175 - L1-Ta germline . no 183 OPA1
srip82589 chr4 14849038 14849038 + L1-Ta germline . no 183 .
srip83336 chr4 20246382 20246382 + L1-Ta germline . no 183 .
srip84877 chr4 47007790 47007790 - L1-Ta germline . no 183 .
srip85445 chr4 57497067 57497067 - L1-Ta germline . no 183 .
srip85987 chr4 61330106 61330106 + L1-Ta germline . no 183 .
srip86190 chr4 66413932 66413932 + L1-Ta germline . no 183 EPHA5
srip86611 chr4 69572737 69572737 - L1-Ta germline . no 183 LOC728811
srip87819 chr4 85317459 85317459 - L1-Ta germline . no 183 .
srip87833 chr4 85317475 85317475 - L1-Ta germline . no 183 .
srip88129 chr4 95906372 95906372 + L1-Ta germline . no 183 BMPR1B
srip88819 chr4 103343746 103343746 + L1-Ta germline . no 183 .
srip89474 chr4 107938877 107938877 + L1-Ta germline . no 183 DKK2
srip89988 chr4 112628973 112628973 + L1-Ta germline . no 183 .
srip90290 chr4 115132695 115132695 + L1-Ta germline . no 183 .
srip90865 chr4 121291556 121291556 - L1-Ta germline . no 183 .
srip92766 chr4 138177325 138177325 + L1-Ta germline . no 183 .
srip92916 chr4 146927741 146927741 - L1-Ta germline . no 183 .
srip93102 chr4 147225296 147225296 + L1-Ta germline . no 183 SLC10A7
srip93376 chr4 152732810 152732810 - L1-Ta germline . no 183 .
srip93718 chr4 154595629 154595629 - L1-Ta germline . no 183 .
srip94420 chr4 169626245 169626245 - L1-Ta germline . no 183 PALLD
srip97049 chr5 24778761 24778761 - L1-Ta germline . no 183 .
srip97948 chr5 33633348 33633348 - L1-Ta germline . no 183 ADAMTS12
srip98291 chr5 40041336 40041336 - L1-Ta germline . no 183 .
srip98596 chr5 46396964 46396964 + L1-Ta germline . no 183 .
srip99487 chr5 68263461 68263461 - L1-Ta germline . no 183 .
srip99714 chr5 79108566 79108566 - L1-Ta germline . no 183 .
srip99761 chr5 83619783 83619783 - L1-Ta germline . no 183 EDIL3
srip100076 chr5 84239673 84239673 - L1-Ta germline . no 183 .
srip100761 chr5 89450781 89450781 + L1-Ta germline . no 183 .
srip102247 chr5 109480258 109480258 - L1-Ta germline . no 183 .
srip102522 chr5 109567542 109567542 + L1-Ta germline . no 183 .
srip104226 chr5 144331013 144331013 - L1-Ta germline . no 183 .
srip104301 chr5 145009355 145009355 + L1-Ta germline . no 183 .
srip104833 chr5 154873933 154873933 - L1-Ta germline . no 183 .
srip105225 chr5 155619865 155619865 + L1-Ta germline . no 183 .
srip105569 chr5 159351199 159351199 - L1-Ta germline . no 183 ADRA1B
srip105721 chr5 160435665 160435665 - L1-Ta germline . no 183 .
srip107079 chr6 13191033 13191033 + L1-Ta germline . no 183 PHACTR1
srip107540 chr6 13503049 13503049 + L1-Ta germline . no 183 .
srip108267 chr6 45852697 45852697 - L1-Ta germline . no 183 .
srip109946 chr6 68112755 68112755 - L1-Ta germline . no 183 .
srip111069 chr6 77980650 77980650 - L1-Ta germline . no 183 .
srip111299 chr6 81293578 81293578 - L1-Ta germline . no 183 .
srip112172 chr6 91669521 91669521 - L1-Ta germline . no 183 .
srip113011 chr6 114091140 114091140 + L1-Ta germline . no 183 LOC100652953
srip114724 chr6 148195789 148195789 + L1-Ta germline . no 183 .
srip114870 chr6 154215663 154215663 + L1-Ta germline . no 183 .
srip114950 chr6 156362482 156362482 + L1-Ta germline . no 183 .
srip115067 chr6 157968737 157968737 - L1-Ta germline . no 183 ZDHHC14
srip116173 chr7 8886715 8886715 + L1-Ta germline . no 183 .
srip116878 chr7 41310786 41310786 - L1-Ta germline . no 183 .
srip117475 chr7 52789472 52789472 + L1-Ta germline . no 183 .
srip117702 chr7 55383721 55383721 - L1-Ta germline . no 183 .
srip117928 chr7 61079049 61079049 + L1-Ta germline . no 183 .
srip117957 chr7 61778308 61778308 - L1-Ta germline . no 183 .
srip118180 chr7 62492930 62492930 + L1-Ta germline . no 183 .
srip119846 chr7 84901724 84901724 - L1-Ta germline . no 183 .
srip121176 chr7 107410719 107410719 - L1-Ta germline . no 183 SLC26A3
srip121780 chr7 107829263 107829263 + L1-Ta germline . no 183 NRCAM
srip122370 chr7 112789594 112789594 - L1-Ta germline . no 183 .
srip122455 chr7 112789623 112789623 - L1-Ta germline . no 183 .
srip124033 chr8 4452894 4452894 - L1-Ta germline . no 183 CSMD1
srip124547 chr8 5829283 5829283 - L1-Ta germline . no 183 .
srip125411 chr8 24926545 24926545 - L1-Ta germline . no 183 .
srip126909 chr8 67381885 67381885 - L1-Ta germline . no 183 .
srip127318 chr8 72399221 72399221 - L1-Ta germline . no 183 .
srip128184 chr8 85428622 85428622 + L1-Ta germline . no 183 RALYL
srip128229 chr8 87315040 87315040 + L1-Ta germline . no 183 .
srip128438 chr8 92186265 92186265 - L1-Ta germline . no 183 LRRC69
srip128762 chr8 107557032 107557032 - L1-Ta germline . no 183 OXR1
srip129011 chr8 115773126 115773126 + L1-Ta germline . no 183 .
srip130098 chr8 131041219 131041219 + L1-Ta germline . no 183 .
srip130278 chr8 133079218 133079218 - L1-Ta germline . no 183 HHLA1
srip130346 chr8 134972242 134972242 + L1-pre-Ta germline . no 183 .
srip130726 chr9 5491418 5491418 + L1-Ta germline . no 183 .
srip131126 chr9 6290494 6290494 + L1-Ta germline . no 183 .
srip132399 chr9 30495887 30495887 - L1-Ta germline . no 183 .
srip132620 chr9 30674468 30674468 - L1-Ta germline . no 183 .
srip132928 chr9 32092748 32092748 - L1-Ta germline . no 183 .
srip133433 chr9 32463894 32463894 - L1-Ta germline . no 183 DDX58
srip133666 chr9 35883708 35883708 + L1-Ta germline . no 183 .
srip134678 chr9 100675534 100675534 - L1-Ta germline . no 183 C9orf156
srip135038 chr9 105073654 105073654 + L1-Ta germline . no 183 .
srip135977 chr9 118083880 118083880 - L1-Ta germline . no 183 DEC1
srip136174 chr9 138411456 138411456 + L1-Ta germline . no 183 .
srip136385 chrX 11953500 11953500 + L1-Ta germline . yes 183 .
srip136771 chrX 24384651 24384651 - L1-Ta germline . no 183 .
srip137338 chrX 55264652 55264652 - L1-Ta germline . no 183 .
srip137584 chrX 55585160 55585160 - L1-Ta germline . no 183 .
srip138331 chrX 66982754 66982754 - L1-Ta germline . no 183 .
srip139128 chrX 78665197 78665197 + L1-Ta germline . no 183 .
srip140071 chrX 102363174 102363174 + L1-Ta germline . no 183 .
srip141391 chrX 129525281 129525281 - L1-Ta germline . no 183 .
srip142166 chrX 154790189 154790189 + L1-Ta germline . no 183 TMLHE