euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

266 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip87 chr1 17229479 17229479 - L1-Ta germline . no 182 .
srip565 chr1 43383333 43383333 + L1-Ta germline . no 182 .
srip843 chr1 56405398 56405398 - L1-Ta germline . no 182 LOC100507652
srip1562 chr1 69801795 69801795 + L1-Ta germline . no 182 .
srip1991 chr1 81855783 81855783 + L1-Ta germline . no 182 .
srip2401 chr1 90914512 90914512 + L1-Ta germline validated no 182 .
srip3298 chr1 105968014 105968014 - L1-Ta germline . no 182 .
srip3711 chr1 116980828 116980828 - L1-Ta germline . no 182 .
srip4030 chr1 149216797 149216797 + L1-Ta germline . no 182 .
srip4482 chr1 158696201 158696201 - L1-Ta germline . no 182 .
srip4592 chr1 163772800 163772800 - L1-Ta germline . no 182 .
srip5983 chr1 192262254 192262254 - L1-Ta germline . no 182 .
srip6006 chr1 192262268 192262268 - L1-Ta germline . no 182 .
srip6271 chr1 194934648 194934648 - L1-Ta germline validated no 182 .
srip6355 chr1 207579511 207579511 + L1-Ta germline . no 182 .
srip7451 chr1 248454039 248454039 - L1-pre-Ta germline . no 182 .
srip7730 chr10 16011786 16011786 - L1-Ta germline . no 182 .
srip7773 chr10 16031588 16031588 + L1-Ta germline . no 182 .
srip7792 chr10 17310909 17310909 + L1-Ta germline . no 182 .
srip8412 chr10 25707687 25707687 - L1-Ta germline . no 182 GPR158
srip8899 chr10 53063103 53063103 - L1-Ta germline . no 182 PRKG1
srip9476 chr10 68178133 68178133 + L1-Ta germline . no 182 CTNNA3
srip9674 chr10 74767506 74767506 - L1-Ta germline . no 182 P4HA1
srip10752 chr10 106314443 106314443 + L1-Ta germline . no 182 .
srip11199 chr10 110453470 110453470 + L1-Ta germline . no 182 .
srip11897 chr10 126983631 126983631 - L1-Ta germline . no 182 .
srip11909 chr10 126983646 126983646 - L1-Ta germline . no 182 .
srip12582 chr11 15507484 15507484 - L1-Ta germline . no 182 .
srip12983 chr11 26159992 26159992 - L1-Ta germline . no 182 .
srip13244 chr11 29874260 29874260 - L1-Ta germline . no 182 .
srip13781 chr11 33670123 33670123 + L1-Ta germline . no 182 C11orf41
srip13982 chr11 40841271 40841271 + L1-Ta germline . no 182 .
srip14350 chr11 41831811 41831811 - L1-Ta germline . no 182 .
srip14421 chr11 42376730 42376730 - L1-Ta germline . no 182 .
srip14748 chr11 48360753 48360753 - L1-Ta germline . no 182 .
srip15346 chr11 58171838 58171838 + L1-Ta germline . no 182 .
srip16153 chr11 72808550 72808550 + L1-Ta germline . no 182 FCHSD2
srip17758 chr11 104556130 104556130 - L1-Ta germline . no 182 .
srip18038 chr11 110377879 110377879 - L1-Ta germline . no 182 .
srip18322 chr11 119327942 119327942 - L1-Ta germline . no 182 LOC100499227
srip19306 chr11 134305648 134305648 - L1-Ta germline . no 182 .
srip20708 chr12 28226413 28226413 - L1-Ta germline . no 182 .
srip24022 chr12 79338037 79338037 - L1-Ta germline . no 182 SYT1
srip24419 chr12 84955216 84955216 - L1-Ta germline . no 182 .
srip24910 chr12 85506290 85506290 + L1-Ta germline . no 182 LRRIQ1
srip24982 chr12 87394040 87394040 + L1-pre-Ta germline . no 182 .
srip25039 chr12 92345987 92345987 + L1-Ta germline . no 182 .
srip25121 chr12 95808527 95808527 - L1-Ta germline . no 182 .
srip25633 chr12 117814447 117814447 - L1-Ta germline . no 182 .
srip25994 chr12 118186926 118186926 + L1-Ta germline . no 182 KSR2
srip26709 chr13 19620990 19620990 + L1-Ta germline . no 182 PHF2P1
srip27003 chr13 22489805 22489805 + L1-Ta germline . no 182 .
srip27499 chr13 29323663 29323663 - L1-Ta germline . no 182 .
srip27834 chr13 38567445 38567445 + L1-Ta germline . no 182 HSPD1P9
srip28436 chr13 58556528 58556528 + L1-Ta germline . no 182 .
srip29039 chr13 61462336 61462336 - L1-Ta germline . no 182 .
srip29223 chr13 61681801 61681801 - L1-Ta germline . no 182 .
srip29611 chr13 61734485 61734485 + L1-Ta germline . no 182 .
srip31009 chr13 79259793 79259793 - L1-Ta germline . no 182 .
srip31417 chr13 85871602 85871602 - L1-Ta germline . no 182 .
srip32007 chr13 86340153 86340153 - L1-Ta germline . no 182 .
srip32748 chr13 96834839 96834839 + L1-Ta germline . no 182 HS6ST3
srip33484 chr13 104296223 104296223 - L1-Ta germline . no 182 .
srip33641 chr13 104395943 104395943 - L1-Ta germline . no 182 .
srip33783 chr13 105280146 105280146 - L1-Ta germline . no 182 .
srip34275 chr14 19000969 19000969 + L1-Ta germline . no 182 .
srip34456 chr14 24992912 24992912 - L1-Ta germline . no 182 .
srip35238 chr14 28301261 28301261 + L1-Ta germline . no 182 .
srip36020 chr14 36674760 36674760 + L1-Ta germline . no 182 .
srip36072 chr14 37769602 37769602 - L1-Ta germline . no 182 MIPOL1
srip36102 chr14 38325544 38325544 + L1-Ta germline . no 182 .
srip37141 chr14 52667758 52667758 - L1-Ta germline . no 182 .
srip37659 chr14 64907551 64907551 + L1-Ta germline . no 182 LOC100506245;MTHFD1
srip37680 chr14 67419043 67419043 + L1-Ta germline validated no 182 GPHN
srip37850 chr14 67419863 67419863 - L1-Ta germline . no 182 GPHN
srip37946 chr14 68784244 68784244 + L1-Ta germline . no 182 RAD51B
srip40733 chr15 51843819 51843819 + L1-Ta germline . no 182 DMXL2
srip40922 chr15 53956099 53956099 + L1-Ta germline . no 182 WDR72
srip41019 chr15 55129551 55129551 + L1-Ta germline . no 182 .
srip41337 chr15 58902199 58902199 + L1-Ta germline . no 182 ADAM10
srip42681 chr15 97226910 97226910 - L1-Ta germline . no 182 .
srip43045 chr15 98622504 98622504 + L1-Ta germline . no 182 .
srip43064 chr15 100432259 100432259 - L1-Ta germline . no 182 .
srip43390 chr15 100931161 100931161 - L1-Ta germline . no 182 .
srip43636 chr16 6793831 6793831 + L1-Ta germline . no 182 RBFOX1
srip44766 chr16 32523893 32523893 - L1-Ta germline . no 182 .
srip45046 chr16 32525611 32525611 - L1-Ta germline . no 182 .
srip45472 chr16 33992430 33992430 + L1-Ta germline . no 182 .
srip45861 chr16 61079188 61079188 + L1-Ta germline . no 182 .
srip46391 chr16 76865776 76865776 - L1-Ta germline . no 182 .
srip47348 chr17 28398313 28398313 + L1-Ta germline . no 182 EFCAB5
srip47889 chr17 34272148 34272148 + L1-Ta germline . no 182 .
srip49434 chr18 28732902 28732902 - L1-Ta germline . no 182 DSC1
srip50000 chr18 49216219 49216219 - L1-Ta germline . no 182 .
srip50710 chr18 51762730 51762730 - L1-Ta germline . no 182 .
srip51816 chr18 74960068 74960068 - L1-Ta germline . no 182 .
srip52820 chr2 9185427 9185427 + L1-Ta germline . no 182 .
srip53426 chr2 23191000 23191000 - L1-Ta germline . no 182 .
srip53757 chr2 35760013 35760013 - L1-Ta germline . no 182 .
srip53945 chr2 35879359 35879359 + L1-Ta germline . no 182 .
srip54588 chr2 42051403 42051403 + L1-Ta germline . no 182 .
srip54668 chr2 43940575 43940575 + L1-Ta germline . no 182 PLEKHH2
srip54910 chr2 53460052 53460052 + L1-Ta germline . no 182 .
srip55223 chr2 68049223 68049223 - L1-Ta germline . no 182 .
srip56494 chr2 83188325 83188325 + L1-Ta germline . no 182 .
srip56611 chr2 92291306 92291306 - L1-Ta germline . no 182 .
srip56666 chr2 92319790 92319790 - L1-Ta germline . no 182 .
srip57444 chr2 120295119 120295119 - L1-Ta germline . no 182 .
srip57658 chr2 129372166 129372166 + L1-Ta germline . no 182 .
srip57804 chr2 132868182 132868182 - L1-Ta germline . no 182 .
srip58259 chr2 142771742 142771742 - L1-Ta germline . no 182 LRP1B
srip58323 chr2 142785302 142785302 + L1-Ta germline . no 182 LRP1B
srip59493 chr2 154100589 154100589 - L1-Ta germline . no 182 .
srip60125 chr2 178676245 178676245 - L1-Ta germline . no 182 PDE11A
srip62352 chr2 230341559 230341559 + L1-Ta germline . no 182 DNER
srip62612 chr2 235519794 235519794 + L1-Ta germline . no 182 .
srip62735 chr20 1231070 1231070 - L1-Ta germline . no 182 RAD21L1
srip63700 chr20 20863919 20863919 + L1-Ta germline . no 182 .
srip63935 chr20 22702082 22702082 - L1-Ta germline . no 182 .
srip64002 chr20 25844027 25844027 + L1-Ta germline . no 182 .
srip65351 chr21 10700007 10700007 - L1-pre-Ta germline . no 182 .
srip66252 chr21 23626191 23626191 - L1-Ta germline . no 182 .
srip66858 chr21 29069171 29069171 + L1-Ta germline . no 182 .
srip66949 chr21 30037725 30037725 - L1-Ta germline . yes 182 .
srip67440 chr22 22486369 22486369 - L1-Ta germline . no 182 IGL@
srip67829 chr22 22715588 22715588 + L1-Ta germline . no 182 IGL@
srip67885 chr22 26507199 26507199 - L1-Ta germline . no 182 .
srip69630 chr3 656435 656435 - L1-Ta germline . no 182 .
srip69776 chr3 2863232 2863232 + L1-Ta germline . no 182 CNTN4
srip69779 chr3 2883534 2883534 - L1-Ta germline . no 182 CNTN4
srip70060 chr3 17409573 17409573 - L1-Ta germline . no 182 TBC1D5
srip70446 chr3 20748896 20748896 - L1-Ta germline . no 182 .
srip71154 chr3 26524464 26524464 - L1-Ta germline . no 182 .
srip72154 chr3 48386752 48386752 + L1-Ta germline . no 182 .
srip73403 chr3 59852903 59852903 + L1-Ta germline . no 182 FHIT
srip73464 chr3 60604755 60604755 + L1-Ta germline validated no 182 FHIT
srip75673 chr3 85663354 85663354 - L1-Ta germline . no 182 CADM2
srip75897 chr3 89022346 89022346 - L1-Ta germline . no 182 .
srip76038 chr3 97329539 97329539 + L1-Ta germline . no 182 EPHA6
srip76357 chr3 102424072 102424072 - L1-Ta germline . no 182 .
srip76434 chr3 105316337 105316337 + L1-Ta germline . no 182 .
srip76693 chr3 111275065 111275065 + L1-Ta germline . no 182 CD96
srip76807 chr3 119046413 119046413 + L1-Ta germline . no 182 ARHGAP31
srip78590 chr3 151148544 151148544 - L1-Ta germline . no 182 MED12L
srip79939 chr3 172749118 172749118 - L1-Ta germline . no 182 SPATA16
srip80386 chr3 176091333 176091333 + L1-Ta germline . no 182 .
srip81511 chr3 186372141 186372141 + L1-Ta germline . no 182 .
srip81636 chr3 187835309 187835309 - L1-Ta germline . no 182 .
srip82447 chr4 12429465 12429465 - L1-Ta germline . no 182 .
srip83335 chr4 20246382 20246382 + L1-Ta germline . no 182 .
srip83383 chr4 22240607 22240607 + L1-Ta germline . no 182 .
srip84052 chr4 37952113 37952113 - L1-Ta germline . no 182 TBC1D1
srip84876 chr4 47007790 47007790 - L1-Ta germline . no 182 .
srip86135 chr4 61999375 61999375 + L1-Ta germline . no 182 .
srip86189 chr4 66413932 66413932 + L1-Ta germline . no 182 EPHA5
srip86610 chr4 69572737 69572737 - L1-Ta germline . no 182 LOC728811
srip87705 chr4 82921896 82921896 + L1-Ta germline . no 182 .
srip87818 chr4 85317459 85317459 - L1-Ta germline . no 182 .
srip87832 chr4 85317475 85317475 - L1-Ta germline . no 182 .
srip88141 chr4 98103803 98103803 - L1-Ta germline . no 182 .
srip88818 chr4 103343746 103343746 + L1-Ta germline . no 182 .
srip89693 chr4 111863090 111863090 - L1-Ta germline . no 182 .
srip89987 chr4 112628973 112628973 + L1-Ta germline . no 182 .
srip90017 chr4 113909989 113909989 - L1-Ta germline . no 182 ANK2
srip90289 chr4 115132695 115132695 + L1-Ta germline . no 182 .
srip91123 chr4 126824141 126824141 + L1-Ta germline . no 182 .
srip91147 chr4 127275367 127275367 + L1-Ta germline . no 182 .
srip91228 chr4 128965442 128965442 - L1-Ta germline . no 182 .
srip92765 chr4 138177325 138177325 + L1-Ta germline . no 182 .
srip92866 chr4 138413561 138413561 - L1-Ta germline . no 182 .
srip93101 chr4 147225296 147225296 + L1-Ta germline . no 182 SLC10A7
srip93236 chr4 149395603 149395603 - L1-Ta germline . no 182 .
srip93717 chr4 154595629 154595629 - L1-Ta germline . no 182 .
srip94036 chr4 165231730 165231730 - L1-Ta germline . no 182 MARCH1
srip94965 chr4 178471522 178471522 - L1-Ta germline . no 182 .
srip95071 chr4 182418058 182418058 - L1-Ta germline . no 182 .
srip95366 chr4 190659695 190659695 + L1-Ta germline . no 182 .
srip95709 chr5 7124391 7124391 + L1-Ta germline . no 182 .
srip96047 chr5 8749515 8749515 + L1-Ta germline . no 182 .
srip96356 chr5 11391276 11391276 + L1-Ta germline . no 182 CTNND2
srip96788 chr5 16883042 16883042 - L1-Ta germline . no 182 MYO10
srip96906 chr5 21207732 21207732 + L1-Ta germline . no 182 .
srip97219 chr5 26093140 26093140 + L1-Ta germline . no 182 .
srip97947 chr5 33633348 33633348 - L1-Ta germline . no 182 ADAMTS12
srip98030 chr5 33797544 33797544 - L1-Ta germline . no 182 ADAMTS12
srip98290 chr5 40041336 40041336 - L1-Ta germline . no 182 .
srip98355 chr5 41602028 41602028 + L1-Ta germline . no 182 .
srip98595 chr5 46396964 46396964 + L1-Ta germline . no 182 .
srip99713 chr5 79108566 79108566 - L1-Ta germline . no 182 .
srip100075 chr5 84239673 84239673 - L1-Ta germline . no 182 .
srip100760 chr5 89450781 89450781 + L1-Ta germline . no 182 .
srip101059 chr5 96866407 96866407 + L1-Ta germline . no 182 .
srip102246 chr5 109480258 109480258 - L1-Ta germline . no 182 .
srip102521 chr5 109567542 109567542 + L1-Ta germline . no 182 .
srip102752 chr5 113568828 113568828 - L1-Ta germline . no 182 .
srip102761 chr5 114516456 114516456 - L1-Ta germline . no 182 .
srip104225 chr5 144331013 144331013 - L1-Ta germline . no 182 .
srip105224 chr5 155619865 155619865 + L1-Ta germline . no 182 .
srip105279 chr5 155898951 155898951 - L1-Ta germline . no 182 SGCD
srip107625 chr6 16950957 16950957 - L1-Ta germline . no 182 .
srip107754 chr6 22670019 22670019 - L1-pre-Ta germline . no 182 .
srip107795 chr6 27956045 27956045 + L1-Ta germline . no 182 .
srip108084 chr6 32613444 32613444 + L1-Ta germline . no 182 .
srip108100 chr6 32638838 32638838 - L1-Ta germline . no 182 .
srip108135 chr6 34886957 34886957 + L1-Ta germline . no 182 ANKS1A
srip108266 chr6 45852697 45852697 - L1-Ta germline . no 182 .
srip108663 chr6 46310291 46310291 + L1-Ta germline . no 182 .
srip108952 chr6 56729315 56729315 - L1-Ta germline . no 182 LOC100652827
srip108977 chr6 57309681 57309681 - L1-pre-Ta germline . no 182 PRIM2
srip109177 chr6 61902641 61902641 + L1-Ta germline . no 182 .
srip109180 chr6 61942547 61942547 - L1-Ta germline . no 182 .
srip109945 chr6 68112755 68112755 - L1-Ta germline . no 182 .
srip110108 chr6 69198745 69198745 - L1-Ta germline . no 182 .
srip110518 chr6 74935590 74935590 - L1-Ta germline . no 182 .
srip111068 chr6 77980650 77980650 - L1-Ta germline . no 182 .
srip111283 chr6 78889134 78889134 + L1-Ta germline . no 182 .
srip112286 chr6 91767655 91767655 + L1-Ta germline . no 182 .
srip113010 chr6 114091140 114091140 + L1-Ta germline . no 182 LOC100652953
srip113539 chr6 133484980 133484980 - L1-Ta germline . no 182 .
srip114869 chr6 154215663 154215663 + L1-Ta germline . no 182 .
srip115066 chr6 157968737 157968737 - L1-Ta germline . no 182 ZDHHC14
srip117076 chr7 45485689 45485689 + L1-Ta germline . no 182 .
srip117474 chr7 52789472 52789472 + L1-Ta germline . no 182 .
srip117956 chr7 61778308 61778308 - L1-Ta germline . no 182 .
srip118179 chr7 62492930 62492930 + L1-Ta germline . no 182 .
srip120219 chr7 85044737 85044737 + L1-Ta germline . no 182 .
srip120756 chr7 93146611 93146611 - L1-Ta germline . no 182 CALCR
srip120931 chr7 95000591 95000591 - L1-Ta germline . no 182 PON3
srip121139 chr7 105967895 105967895 + L1-Ta germline . no 182 .
srip121175 chr7 107410719 107410719 - L1-Ta germline . no 182 SLC26A3
srip121779 chr7 107829263 107829263 + L1-Ta germline . no 182 NRCAM
srip122244 chr7 110484749 110484749 + L1-Ta germline . no 182 IMMP2L
srip122969 chr7 127930866 127930866 - L1-Ta germline . no 182 .
srip124546 chr8 5829283 5829283 - L1-Ta germline . no 182 .
srip125047 chr8 21496230 21496230 + L1-Ta germline . no 182 .
srip125591 chr8 25323104 25323104 - L1-Ta germline . no 182 CDCA2
srip126401 chr8 58347940 58347940 + L1-Ta germline . no 182 .
srip126908 chr8 67381885 67381885 - L1-Ta germline . no 182 .
srip126938 chr8 67758156 67758156 - L1-Ta germline . no 182 C8orf44-SGK3;SGK3
srip128010 chr8 83740679 83740679 + L1-Ta germline . no 182 .
srip128092 chr8 84682865 84682865 + L1-Ta germline . no 182 .
srip128761 chr8 107557032 107557032 - L1-Ta germline . no 182 OXR1
srip129151 chr8 115788580 115788580 - L1-Ta germline . no 182 .
srip129484 chr8 115881781 115881781 + L1-Ta germline . no 182 .
srip130725 chr9 5491418 5491418 + L1-Ta germline . no 182 .
srip132619 chr9 30674468 30674468 - L1-Ta germline . no 182 .
srip133432 chr9 32463894 32463894 - L1-Ta germline . no 182 DDX58
srip133665 chr9 35883708 35883708 + L1-Ta germline . no 182 .
srip133907 chr9 71190135 71190135 - L1-Ta germline . no 182 .
srip133952 chr9 72777411 72777411 - L1-Ta germline . no 182 LOC100507244;MAMDC2
srip134677 chr9 100675534 100675534 - L1-Ta germline . no 182 C9orf156
srip135037 chr9 105073654 105073654 + L1-Ta germline . no 182 .
srip136033 chr9 121394590 121394590 - L1-Ta germline . no 182 .
srip136285 chrX 4659603 4659603 - L1-Ta germline . no 182 .
srip136315 chrX 11628376 11628376 - L1-Ta germline . no 182 ARHGAP6
srip137644 chrX 57806448 57806448 - L1-Ta germline . no 182 .
srip139787 chrX 98264302 98264302 - L1-Ta germline . no 182 .
srip140446 chrX 111557750 111557750 - L1-Ta germline . no 182 ZCCHC16
srip140738 chrX 119892831 119892831 - L1-Ta germline . no 182 .
srip141096 chrX 123230117 123230117 - L1-Ta germline . no 182 STAG2
srip141108 chrX 123611800 123611800 + L1-Ta germline . no 182 ODZ1
srip141126 chrX 123612276 123612276 - L1-Ta germline . no 182 ODZ1
srip141153 chrX 123921246 123921246 - L1-Ta germline . no 182 ODZ1
srip141471 chrX 130495439 130495439 - L1-Ta germline . no 182 .
srip141959 chrX 140515258 140515258 - L1-Ta germline . no 182 .
srip142212 chrY 9951878 9951878 - L1-pre-Ta germline . no 182 .