euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

188 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip505 chr1 42483961 42483961 + L1-Ta germline . no 178 HIVEP3
srip839 chr1 56405398 56405398 - L1-Ta germline . no 178 LOC100507652
srip1987 chr1 81855783 81855783 + L1-Ta germline . no 178 .
srip3067 chr1 102568923 102568923 + L1-Ta germline . no 178 .
srip3924 chr1 121354774 121354774 + L1-Ta germline . no 178 .
srip4173 chr1 152443898 152443898 - L1-Ta germline validated no 178 .
srip5542 chr1 183969672 183969672 - L1-Ta germline . no 178 GLT25D2
srip6351 chr1 207579511 207579511 + L1-Ta germline . no 178 .
srip7397 chr1 242311577 242311577 + L1-Ta germline validated no 178 PLD5
srip8408 chr10 25707687 25707687 - L1-Ta germline . no 178 GPR158
srip8639 chr10 27775762 27775762 + L1-Ta germline . no 178 .
srip9670 chr10 74767506 74767506 - L1-Ta germline . no 178 P4HA1
srip11195 chr10 110453470 110453470 + L1-Ta germline . no 178 .
srip11849 chr10 124455231 124455231 + L1-Ta germline . no 178 .
srip13777 chr11 33670123 33670123 + L1-Ta germline . no 178 C11orf41
srip14346 chr11 41831811 41831811 - L1-Ta germline . no 178 .
srip14744 chr11 48360753 48360753 - L1-Ta germline . no 178 .
srip15103 chr11 55011014 55011014 + L1-Ta germline . no 178 .
srip15142 chr11 55870759 55870759 + L1-Ta germline . no 178 .
srip15344 chr11 58171838 58171838 + L1-Ta germline . no 178 .
srip17199 chr11 94684368 94684368 + L1-Ta germline . no 178 .
srip17754 chr11 104556130 104556130 - L1-Ta germline . no 178 .
srip18277 chr11 114895524 114895524 + L1-Ta germline . no 178 .
srip18559 chr11 127586306 127586306 - L1-Ta germline . no 178 .
srip19302 chr11 134305648 134305648 - L1-Ta germline . no 178 .
srip19657 chr12 8105629 8105629 + L1-Ta germline . no 178 .
srip20155 chr12 12933694 12933694 - L1-Ta germline . no 178 APOLD1
srip21153 chr12 34017325 34017325 - L1-Ta germline . no 178 .
srip22244 chr12 43256986 43256986 - L1-Ta germline . no 178 .
srip22963 chr12 55782238 55782238 + L1-Ta germline . no 178 OR6C66P
srip25117 chr12 95808527 95808527 - L1-Ta germline . no 178 .
srip25248 chr12 98669929 98669929 + L1-Ta germline . no 178 .
srip25631 chr12 117814447 117814447 - L1-Ta germline . no 178 .
srip26649 chr12 129350781 129350781 - L1-Ta germline . no 178 GLT1D1
srip28009 chr13 42771403 42771403 + L1-Ta germline . no 178 DGKH
srip28162 chr13 48856541 48856541 + L1-Ta germline . no 178 .
srip29608 chr13 61734485 61734485 + L1-Ta germline . no 178 .
srip31005 chr13 79259793 79259793 - L1-Ta germline . no 178 .
srip31413 chr13 85871602 85871602 - L1-Ta germline . no 178 .
srip32003 chr13 86340153 86340153 - L1-Ta germline . no 178 .
srip33480 chr13 104296223 104296223 - L1-Ta germline . no 178 .
srip33637 chr13 104395943 104395943 - L1-Ta germline . no 178 .
srip33779 chr13 105280146 105280146 - L1-Ta germline . no 178 .
srip35236 chr14 28301261 28301261 + L1-Ta germline . no 178 .
srip35454 chr14 31150809 31150809 - L1-Ta germline . no 178 SCFD1
srip36018 chr14 36674760 36674760 + L1-Ta germline . no 178 .
srip36069 chr14 37769602 37769602 - L1-Ta germline . no 178 MIPOL1
srip36295 chr14 39875084 39875084 + L1-Ta germline . no 178 FBXO33
srip37137 chr14 52667758 52667758 - L1-Ta germline . no 178 .
srip37354 chr14 59220402 59220402 + L1-Ta germline . no 178 .
srip37846 chr14 67419863 67419863 - L1-Ta germline . no 178 GPHN
srip38147 chr14 71197799 71197799 + L1-Ta germline . no 178 MAP3K9
srip38600 chr14 86381796 86381796 - L1-Ta germline . no 178 .
srip38949 chr14 107038564 107038564 + L1-Ta germline . no 178 IGH@
srip39325 chr15 28175791 28175791 - L1-Ta germline . no 178 OCA2
srip39747 chr15 37707890 37707890 - L1-Ta germline . no 178 .
srip40203 chr15 47507329 47507329 - L1-Ta germline . no 178 SEMA6D
srip41240 chr15 56251153 56251153 + L1-Ta germline . no 178 NEDD4
srip41692 chr15 62064901 62064901 + L1-Ta germline . no 178 .
srip43386 chr15 100931161 100931161 - L1-Ta germline . no 178 .
srip43634 chr16 6793831 6793831 + L1-Ta germline . no 178 RBFOX1
srip44762 chr16 32523893 32523893 - L1-Ta germline . no 178 .
srip45042 chr16 32525611 32525611 - L1-Ta germline . no 178 .
srip45468 chr16 33992430 33992430 + L1-Ta germline . no 178 .
srip45857 chr16 61079188 61079188 + L1-Ta germline . no 178 .
srip46546 chr17 6341644 6341644 - L1-Ta germline . no 178 .
srip47346 chr17 28398313 28398313 + L1-Ta germline . no 178 EFCAB5
srip48435 chr17 68357409 68357409 + L1-Ta germline . no 178 .
srip49432 chr18 28732902 28732902 - L1-Ta germline . no 178 DSC1
srip50401 chr18 51488332 51488332 - L1-Ta germline . no 178 .
srip51668 chr18 74515287 74515287 - L1-Ta germline . no 178 LOC100131655
srip52804 chr2 7050603 7050603 + L1-Ta germline . no 178 .
srip54099 chr2 36381238 36381238 + L1-Ta germline . no 178 .
srip54215 chr2 36570243 36570243 - L1-Ta germline . no 178 .
srip54585 chr2 42051403 42051403 + L1-Ta germline . no 178 .
srip54650 chr2 42051416 42051416 + L1-Ta germline . no 178 .
srip56233 chr2 82098043 82098043 + L1-Ta germline . no 178 .
srip57801 chr2 132868182 132868182 - L1-Ta germline . no 178 .
srip57905 chr2 137426142 137426142 - L1-Ta germline . no 178 .
srip58202 chr2 141852908 141852908 - L1-Ta germline . no 178 LRP1B
srip59602 chr2 156527822 156527822 + L1-Ta germline . no 178 .
srip60797 chr2 191478714 191478714 - L1-Ta germline . no 178 .
srip61606 chr2 212707181 212707181 + L1-Ta germline . no 178 ERBB4
srip62610 chr2 235519794 235519794 + L1-Ta germline . no 178 .
srip63086 chr20 7292200 7292200 + L1-Ta germline . no 178 .
srip63439 chr20 16479495 16479495 - L1-Ta germline . no 178 KIF16B
srip64000 chr20 25844027 25844027 + L1-Ta germline . no 178 .
srip64788 chr20 41952105 41952105 - L1-Ta germline . no 178 .
srip66022 chr21 19517313 19517313 - L1-Ta germline . no 178 .
srip66854 chr21 29069171 29069171 + L1-Ta germline . no 178 .
srip66948 chr21 30037725 30037725 - L1-Ta germline . yes 178 .
srip67900 chr22 28455902 28455902 - L1-Ta germline . no 178 TTC28
srip70056 chr3 17409573 17409573 - L1-Ta germline . no 178 TBC1D5
srip70444 chr3 20748896 20748896 - L1-Ta germline . no 178 .
srip70797 chr3 24987874 24987874 - L1-Ta germline . no 178 .
srip72164 chr3 51097618 51097618 + L1-Ta germline . no 178 DOCK3
srip72737 chr3 55788580 55788580 + L1-Ta germline . no 178 ERC2
srip75601 chr3 85576568 85576568 + L1-Ta germline . no 178 CADM2
srip75895 chr3 89022346 89022346 - L1-Ta germline . no 178 .
srip76431 chr3 105316337 105316337 + L1-Ta germline . no 178 .
srip76612 chr3 109751770 109751770 + L1-Ta germline . no 178 .
srip76804 chr3 119046413 119046413 + L1-Ta germline . no 178 ARHGAP31
srip77268 chr3 123590726 123590726 + L1-Ta germline . no 178 MYLK
srip78586 chr3 151148544 151148544 - L1-Ta germline . no 178 MED12L
srip79316 chr3 162717306 162717306 + L1-Ta germline . no 178 .
srip80217 chr3 175677970 175677970 - L1-Ta germline . no 178 .
srip80382 chr3 176091333 176091333 + L1-Ta germline . no 178 .
srip80444 chr3 180091672 180091672 + L1-Ta germline . no 178 .
srip81507 chr3 186372141 186372141 + L1-Ta germline . no 178 .
srip81632 chr3 187835309 187835309 - L1-Ta germline . no 178 .
srip83331 chr4 20246382 20246382 + L1-Ta germline . no 178 .
srip83874 chr4 29480708 29480708 - L1-Ta germline . no 178 .
srip84872 chr4 47007790 47007790 - L1-Ta germline . no 178 .
srip86188 chr4 66413932 66413932 + L1-Ta germline . no 178 EPHA5
srip88816 chr4 103343746 103343746 + L1-Ta germline . no 178 .
srip89590 chr4 110248316 110248316 - L1-Ta germline . no 178 .
srip89663 chr4 110248332 110248332 - L1-Ta germline . no 178 .
srip90285 chr4 115132695 115132695 + L1-Ta germline . no 178 .
srip92212 chr4 134596423 134596423 + L1-Ta germline . no 178 .
srip92761 chr4 138177325 138177325 + L1-Ta germline . no 178 .
srip92915 chr4 146927741 146927741 - L1-Ta germline . no 178 .
srip93098 chr4 147225296 147225296 + L1-Ta germline . no 178 SLC10A7
srip95364 chr4 190659695 190659695 + L1-Ta germline . no 178 .
srip95466 chr5 1645773 1645773 + L1-Ta germline . no 178 .
srip96043 chr5 8749515 8749515 + L1-Ta germline . no 178 .
srip96354 chr5 11391276 11391276 + L1-Ta germline . no 178 CTNND2
srip96451 chr5 14079084 14079084 + L1-Ta germline . no 178 .
srip96902 chr5 21207732 21207732 + L1-Ta germline . no 178 .
srip97943 chr5 33633348 33633348 - L1-Ta germline . no 178 ADAMTS12
srip98288 chr5 40041336 40041336 - L1-Ta germline . no 178 .
srip98310 chr5 41428535 41428535 + L1-Ta germline . no 178 PLCXD3
srip98352 chr5 41602028 41602028 + L1-Ta germline . no 178 .
srip99486 chr5 68263461 68263461 - L1-Ta germline . no 178 .
srip100073 chr5 84239673 84239673 - L1-Ta germline . no 178 .
srip100756 chr5 89450781 89450781 + L1-Ta germline . no 178 .
srip101693 chr5 105935373 105935373 + L1-Ta germline . no 178 .
srip102242 chr5 109480258 109480258 - L1-Ta germline . no 178 .
srip102519 chr5 109567542 109567542 + L1-Ta germline . no 178 .
srip102994 chr5 124155349 124155349 - L1-Ta germline . no 178 .
srip103369 chr5 125040045 125040045 + L1-Ta germline . no 178 .
srip103421 chr5 132033448 132033448 + L1-Ta germline . no 178 KIF3A
srip103757 chr5 137014775 137014775 - L1-Ta germline . no 178 KLHL3
srip104830 chr5 154873933 154873933 - L1-Ta germline . no 178 .
srip105566 chr5 159351199 159351199 - L1-Ta germline . no 178 ADRA1B
srip105782 chr5 162819864 162819864 + L1-Ta germline . no 178 .
srip106660 chr6 5558289 5558289 + L1-Ta germline . no 178 FARS2
srip107077 chr6 13191033 13191033 + L1-Ta germline . no 178 PHACTR1
srip107537 chr6 13503049 13503049 + L1-Ta germline . no 178 .
srip107941 chr6 32457289 32457289 + L1-Ta germline . no 178 .
srip108008 chr6 32509106 32509106 - L1-Ta germline . no 178 .
srip108068 chr6 32589567 32589567 + L1-Ta germline . no 178 .
srip109941 chr6 68112755 68112755 - L1-Ta germline . no 178 .
srip110106 chr6 69198745 69198745 - L1-Ta germline . no 178 .
srip111065 chr6 77980650 77980650 - L1-Ta germline . no 178 .
srip111204 chr6 78649689 78649689 - L1-Ta germline . no 178 .
srip112169 chr6 91669521 91669521 - L1-Ta germline . no 178 .
srip112284 chr6 91767655 91767655 + L1-Ta germline . no 178 .
srip112416 chr6 102215188 102215188 + L1-Ta germline . no 178 GRIK2
srip113757 chr6 142450101 142450101 - L1-Ta germline . no 178 .
srip114441 chr6 148163587 148163587 + L1-Ta germline . no 178 .
srip114865 chr6 154215663 154215663 + L1-Ta germline . no 178 .
srip115062 chr6 157968737 157968737 - L1-Ta germline . no 178 ZDHHC14
srip115547 chr6 162181257 162181257 + L1-Ta germline . no 178 PARK2
srip116250 chr7 12725153 12725153 + L1-Ta germline . no 178 .
srip118867 chr7 70188676 70188676 - L1-Ta germline . no 178 AUTS2
srip119843 chr7 84901724 84901724 - L1-Ta germline . no 178 .
srip121775 chr7 107829263 107829263 + L1-Ta germline . no 178 NRCAM
srip122240 chr7 110484749 110484749 + L1-Ta germline . no 178 IMMP2L
srip122594 chr7 119446561 119446561 - L1-Ta germline . no 178 .
srip124030 chr8 4452894 4452894 - L1-Ta germline . no 178 CSMD1
srip126904 chr8 67381885 67381885 - L1-Ta germline . no 178 .
srip127317 chr8 72399221 72399221 - L1-Ta germline . no 178 .
srip128226 chr8 87315040 87315040 + L1-Ta germline . no 178 .
srip128757 chr8 107557032 107557032 - L1-Ta germline . no 178 OXR1
srip128844 chr8 111632621 111632621 + L1-Ta germline . no 178 .
srip129797 chr8 126537672 126537672 - L1-Ta germline . no 178 .
srip131123 chr9 6290494 6290494 + L1-Ta germline . no 178 .
srip131380 chr9 7741406 7741406 + L1-Ta germline . no 178 .
srip132926 chr9 32092748 32092748 - L1-Ta germline . no 178 .
srip133428 chr9 32463894 32463894 - L1-Ta germline . no 178 DDX58
srip133661 chr9 35883708 35883708 + L1-Ta germline . no 178 .
srip133949 chr9 72777411 72777411 - L1-Ta germline . no 178 LOC100507244;MAMDC2
srip134675 chr9 100675534 100675534 - L1-Ta germline . no 178 C9orf156
srip135036 chr9 105073654 105073654 + L1-Ta germline . no 178 .
srip135976 chr9 118083880 118083880 - L1-Ta germline . no 178 DEC1
srip138328 chrX 66982754 66982754 - L1-Ta germline . no 178 .
srip140070 chrX 102363174 102363174 + L1-Ta germline . no 178 .
srip141467 chrX 130495439 130495439 - L1-Ta germline . no 178 .