euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

179 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip57 chr1 12875996 12875996 - L1-Ta germline . no 686 .
srip1662 chr1 74984526 74984526 - L1-Ta germline . no 686 FPGT-TNNI3K;TNNI3K
srip2169 chr1 86398798 86398798 + L1-Ta germline . no 686 COL24A1
srip2199 chr1 86741680 86741680 + L1-Ta germline . yes 686 .
srip2257 chr1 87144762 87144762 - L1-Ta germline . no 686 .
srip2661 chr1 99854086 99854086 - L1-Ta germline . no 686 .
srip3262 chr1 105386449 105386449 - L1-Ta germline . no 686 .
srip3990 chr1 121478354 121478354 + L1-Ta germline . yes 686 .
srip4306 chr1 158238664 158238664 + L1-Ta germline . yes 686 .
srip4848 chr1 166212290 166212290 - L1-Ta germline . yes 686 .
srip5252 chr1 176721478 176721478 + L1-Ta germline . yes 686 PAPPA2
srip6152 chr1 193836827 193836827 + L1-Ta germline . yes 686 .
srip7060 chr1 228058514 228058514 - L1-Ta germline . yes 686 .
srip7623 chr10 5293335 5293335 + L1-Ta germline . yes 686 .
srip8730 chr10 32929792 32929792 - L1-Ta germline . no 686 C10orf68
srip8830 chr10 42527965 42527965 + L1-Ta germline . no 686 .
srip8988 chr10 58863547 58863547 - L1-Ta germline . no 686 .
srip11306 chr10 110846814 110846814 + L1-Ta germline . yes 686 .
srip12629 chr11 15995864 15995864 - L1-Ta germline . no 686 SOX6
srip13679 chr11 33670122 33670122 + L1-Ta germline validated no 686 C11orf41
srip15538 chr11 59815986 59815986 - L1-Ta germline . no 686 .
srip16855 chr11 92875927 92875927 + L1-Ta germline . no 686 .
srip17414 chr11 99478828 99478828 + L1-Ta germline . yes 686 CNTN5
srip20314 chr12 14335361 14335361 + L1-Ta germline . yes 686 .
srip20386 chr12 24868717 24868717 - L1-Ta germline validated no 686 .
srip23428 chr12 70167057 70167057 - L1-Ta germline . no 686 RAB3IP
srip25311 chr12 98672913 98672913 + L1-Ta germline . yes 686 .
srip27536 chr13 30215833 30215833 - L1-Ta germline . no 686 .
srip27617 chr13 33441812 33441812 - L1-Ta germline . no 686 .
srip28384 chr13 57793451 57793451 - L1-Ta germline . no 686 .
srip28490 chr13 59088395 59088395 + L1-Ta germline . no 686 .
srip30526 chr13 77186902 77186902 - L1-Ta germline . no 686 .
srip32079 chr13 86502081 86502081 + L1-Ta germline . no 686 .
srip32246 chr13 88851194 88851194 - L1-Ta germline . no 686 .
srip32412 chr13 91626302 91626302 + L1-Ta germline . no 686 .
srip32474 chr13 92855881 92855881 + L1-Ta germline . yes 686 GPC5
srip36342 chr14 39875096 39875096 + L1-Ta germline validated no 686 FBXO33
srip38024 chr14 71020049 71020049 + L1-Ta germline . no 686 .
srip38133 chr14 71197779 71197779 + L1-Ta germline validated no 686 MAP3K9
srip38989 chr15 20022208 20022208 - L1-Ta germline . no 686 .
srip40802 chr15 51875289 51875289 - L1-Ta germline . no 686 DMXL2
srip40861 chr15 53448042 53448042 - L1-Ta germline . no 686 .
srip41326 chr15 58012013 58012013 - L1-Ta germline . no 686 .
srip41603 chr15 61328970 61328970 - L1-Ta germline . no 686 RORA
srip43866 chr16 7925421 7925421 + L1-Ta germline . no 686 .
srip45847 chr16 61079187 61079187 + L1-Ta germline . no 686 .
srip46582 chr17 9525306 9525306 + L1-Ta germline . yes 686 WDR16
srip47439 chr17 29659591 29659591 - L1-Ta germline . no 686 NF1
srip48734 chr18 5332408 5332408 - L1-Ta germline . no 686 .
srip49542 chr18 30185593 30185593 - L1-Ta germline . no 686 .
srip49556 chr18 32690186 32690186 + L1-Ta germline . no 686 MAPRE2
srip49835 chr18 45192801 45192801 + L1-Ta germline . no 686 .
srip50110 chr18 50097423 50097423 - L1-Ta germline . no 686 DCC
srip51304 chr18 68413712 68413712 - L1-Ta germline . no 686 .
srip51380 chr18 69024727 69024727 + L1-Ta germline . yes 686 .
srip52517 chr19 55091547 55091547 - L1-Ta germline . no 686 LILRA2
srip52875 chr2 13068018 13068018 + L1-Ta germline . no 686 .
srip54389 chr2 41777137 41777137 - L1-Ta germline . no 686 .
srip55654 chr2 73354355 73354355 - L1-Ta germline . no 686 .
srip56136 chr2 82098027 82098027 + L1-Ta germline . no 686 .
srip56321 chr2 83068216 83068216 + L1-Ta germline . yes 686 .
srip57014 chr2 108631988 108631988 - L1-Ta germline . no 686 .
srip57417 chr2 118667183 118667183 - L1-Ta germline . no 686 .
srip57626 chr2 126510571 126510571 + L1-Ta germline . yes 686 .
srip58376 chr2 142788891 142788891 - L1-Ta germline . no 686 LRP1B
srip58663 chr2 144624534 144624534 + L1-Ta germline . yes 686 .
srip59479 chr2 153864262 153864262 - L1-Ta germline . no 686 .
srip59946 chr2 176346680 176346680 - L1-Ta germline . no 686 .
srip60776 chr2 191478703 191478703 - L1-Ta germline . no 686 .
srip61773 chr2 214647628 214647628 - L1-Ta germline . no 686 SPAG16
srip63310 chr20 12781652 12781652 - L1-Ta germline . no 686 .
srip63688 chr20 19400466 19400466 - L1-Ta germline . no 686 SLC24A3
srip66542 chr21 24125137 24125137 + L1-Ta germline . yes 686 .
srip67750 chr22 22715585 22715585 + L1-Ta germline . no 686 IGL@
srip69703 chr3 656444 656444 - L1-Ta germline validated no 686 .
srip69768 chr3 2050178 2050178 + L1-Ta germline . yes 686 .
srip70921 chr3 26439488 26439488 - L1-Ta germline . no 686 .
srip71380 chr3 33554072 33554072 + L1-Ta germline . no 686 CLASP2
srip72003 chr3 41821477 41821477 + L1-Ta germline . yes 686 ULK4
srip72135 chr3 46824583 46824583 - L1-Ta germline . no 686 .
srip73367 chr3 59852889 59852889 + L1-Ta germline . no 686 FHIT
srip74418 chr3 80590157 80590157 - L1-Ta germline . no 686 .
srip74622 chr3 81770349 81770349 + L1-Ta germline . yes 686 GBE1
srip74721 chr3 81991002 81991002 - L1-Ta germline . no 686 .
srip76508 chr3 105473860 105473860 - L1-Ta germline . no 686 CBLB
srip76593 chr3 108924737 108924737 + L1-Ta germline . yes 686 .
srip76677 chr3 109836400 109836400 - L1-Ta germline . no 686 .
srip76790 chr3 116084880 116084880 + L1-Ta germline . no 686 LSAMP-AS1;LSAMP
srip76901 chr3 121120741 121120741 + L1-Ta germline . yes 686 STXBP5L
srip77119 chr3 123590712 123590712 + L1-Ta germline validated no 686 MYLK
srip77396 chr3 129972765 129972765 + L1-Ta germline . yes 686 COL6A4P2
srip77441 chr3 130352893 130352893 + L1-Ta germline . yes 686 COL6A6
srip77592 chr3 132664831 132664831 - L1-Ta germline . no 686 .
srip78943 chr3 154632590 154632590 + L1-Ta germline . yes 686 .
srip79963 chr3 172749131 172749131 - L1-Ta germline . no 686 SPATA16
srip80213 chr3 175677955 175677955 - L1-Ta germline . no 686 .
srip80336 chr3 176091321 176091321 + L1-Ta germline . no 686 .
srip80937 chr3 182952475 182952475 - L1-Ta germline . no 686 MCF2L2
srip81622 chr3 187835306 187835306 - L1-Ta germline . no 686 .
srip82342 chr4 7995690 7995690 - L1-Ta germline . no 686 ABLIM2
srip82646 chr4 15849204 15849204 + L1-Ta germline . no 686 CD38
srip83315 chr4 19170950 19170950 + L1-Ta germline . no 686 .
srip83626 chr4 26929329 26929329 + L1-Ta germline . no 686 STIM2
srip83830 chr4 29321850 29321850 + L1-Ta germline . no 686 .
srip84531 chr4 46058194 46058194 + L1-Ta germline . no 686 GABRG1
srip84577 chr4 46799112 46799112 + L1-Ta germline . yes 686 COX7B2
srip84627 chr4 46883027 46883027 + L1-Ta germline . no 686 .
srip85026 chr4 48738022 48738022 + L1-Ta germline . no 686 FRYL
srip85057 chr4 49057917 49057917 - L1-Ta germline . no 686 CWH43
srip87445 chr4 80864880 80864880 + L1-Ta germline . yes 686 ANTXR2
srip88366 chr4 99513572 99513572 - L1-Ta germline . no 686 TSPAN5
srip89297 chr4 107492188 107492188 - L1-Ta germline . no 686 .
srip90330 chr4 115132696 115132696 + L1-Ta germline . no 686 .
srip90852 chr4 120869874 120869874 - L1-Ta germline . no 686 .
srip92331 chr4 136006539 136006539 + L1-Ta germline . no 686 .
srip93186 chr4 147543284 147543284 + L1-Ta germline . no 686 .
srip94164 chr4 167369021 167369021 - L1-Ta germline . no 686 .
srip94477 chr4 170281916 170281916 - L1-Ta germline . no 686 .
srip96418 chr5 12197468 12197468 - L1-Ta germline . yes 686 .
srip96874 chr5 20644380 20644380 - L1-Ta germline . no 686 .
srip97800 chr5 33633345 33633345 - L1-Ta germline . no 686 ADAMTS12
srip98148 chr5 34153955 34153955 + L1-Ta germline . yes 686 .
srip98854 chr5 51488295 51488295 - L1-Ta germline . no 686 .
srip101540 chr5 105483500 105483500 - L1-Ta germline . no 686 .
srip103956 chr5 138420464 138420464 + L1-Ta germline . yes 686 SIL1
srip104279 chr5 144473640 144473640 + L1-Ta germline . no 686 .
srip104373 chr5 147337963 147337963 - L1-Ta germline . no 686 .
srip104588 chr5 151462442 151462442 + L1-Ta germline . no 686 .
srip104940 chr5 155488954 155488954 - L1-Ta germline . yes 686 .
srip105895 chr5 165848548 165848548 + L1-Ta germline . yes 686 .
srip107710 chr6 18910854 18910854 - L1-Ta germline . no 686 .
srip108793 chr6 50611605 50611605 - L1-Ta germline . no 686 .
srip108892 chr6 55594843 55594843 - L1-Ta germline . no 686 .
srip109866 chr6 66787597 66787597 - L1-Ta germline . no 686 .
srip110389 chr6 73995229 73995229 - L1-Ta germline . no 686 C6orf147
srip112035 chr6 91669505 91669505 - L1-Ta germline . no 686 .
srip112952 chr6 113030984 113030984 + L1-Ta germline . no 686 LOC100287612
srip113173 chr6 121489953 121489953 + L1-Ta germline . no 686 C6orf170
srip113608 chr6 136712687 136712687 + L1-Ta germline . yes 686 MAP7
srip114186 chr6 145500938 145500938 - L1-Ta germline . no 686 .
srip114845 chr6 153029982 153029982 - L1-Ta germline . no 686 MYCT1
srip115770 chr6 162404960 162404960 + L1-Ta germline . no 686 PARK2
srip117129 chr7 45733735 45733735 + L1-Ta germline . no 686 ADCY1
srip117191 chr7 47864830 47864830 + L1-Ta germline validated no 686 PKD1L1
srip119668 chr7 84901721 84901721 - L1-Ta germline . no 686 .
srip122101 chr7 109548699 109548699 + L1-Ta germline . no 686 .
srip122349 chr7 111609264 111609264 + L1-Ta germline . yes 686 DOCK4
srip123093 chr7 130386823 130386823 - L1-Ta germline . no 686 .
srip123222 chr7 141620449 141620449 - L1-Ta germline . no 686 .
srip124815 chr8 9597567 9597567 + L1-Ta germline . yes 686 TNKS
srip125278 chr8 24926384 24926384 - L1-Ta germline . no 686 .
srip128533 chr8 97911008 97911008 + L1-Ta germline . yes 686 PGCP
srip128685 chr8 100233000 100233000 - L1-Ta germline . no 686 VPS13B
srip128953 chr8 114072203 114072203 - L1-Ta germline . no 686 CSMD3
srip129807 chr8 126601133 126601133 + L1-Ta germline . yes 686 .
srip130434 chr8 137450317 137450317 - L1-Ta germline . yes 686 .
srip131649 chr9 10137698 10137698 + L1-Ta germline . yes 686 PTPRD
srip133227 chr9 32463884 32463884 - L1-Ta germline . no 686 DDX58
srip134143 chr9 80014129 80014129 + L1-Ta germline . no 686 VPS13A
srip134316 chr9 86065262 86065262 - L1-Ta germline . no 686 FRMD3
srip134609 chr9 98465870 98465870 + L1-Ta germline . yes 686 .
srip135641 chr9 113185472 113185472 + L1-Ta germline . no 686 SVEP1
srip136360 chrX 11731399 11731399 + L1-Ta germline . yes 686 .
srip136978 chrX 45449426 45449426 + L1-Ta germline . no 686 .
srip138014 chrX 63233094 63233094 - L1-Ta germline . no 686 .
srip138297 chrX 64430988 64430988 + L1-Ta germline . no 686 .
srip138383 chrX 67263241 67263241 + L1-Ta germline . no 686 OPHN1
srip138502 chrX 72606851 72606851 + L1-Ta germline . no 686 .
srip138769 chrX 75543182 75543182 - L1-Ta germline . no 686 .
srip139054 chrX 75949601 75949601 + L1-Ta germline . no 686 .
srip139125 chrX 77696853 77696853 - L1-Ta germline . no 686 .
srip139186 chrX 81746647 81746647 - L1-Ta germline . no 686 .
srip139540 chrX 94857127 94857127 + L1-Ta germline . yes 686 .
srip139773 chrX 98264296 98264296 - L1-Ta germline validated no 686 .
srip140799 chrX 119892835 119892835 - L1-Ta germline . no 686 .
srip140866 chrX 120397638 120397638 - L1-Ta germline . no 686 .
srip141503 chrX 134162047 134162047 + L1-Ta germline . no 686 .
srip141642 chrX 137146500 137146500 + L1-Ta germline . no 686 .
srip142154 chrX 154745667 154745667 - L1-Ta germline . no 686 TMLHE