euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

205 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip196 chr1 31041664 31041664 + L1-Ta germline . no 684 .
srip1660 chr1 74984526 74984526 - L1-Ta germline . no 684 FPGT-TNNI3K;TNNI3K
srip1684 chr1 75192713 75192713 - L1-Ta germline . no 684 CRYZ
srip2167 chr1 86398798 86398798 + L1-Ta germline . no 684 COL24A1
srip2198 chr1 86741680 86741680 + L1-Ta germline . yes 684 .
srip2255 chr1 87144762 87144762 - L1-Ta germline . no 684 .
srip2659 chr1 99854086 99854086 - L1-Ta germline . no 684 .
srip2825 chr1 101978990 101978990 - L1-Ta germline . no 684 .
srip3260 chr1 105386449 105386449 - L1-Ta germline . no 684 .
srip3988 chr1 121478354 121478354 + L1-Ta germline . yes 684 .
srip4104 chr1 149308424 149308424 + L1-Ta germline . no 684 LOC645262
srip4304 chr1 158238664 158238664 + L1-Ta germline . yes 684 .
srip4846 chr1 166212290 166212290 - L1-Ta germline . yes 684 .
srip5294 chr1 179575336 179575336 - L1-Ta germline . no 684 TDRD5
srip6150 chr1 193836827 193836827 + L1-Ta germline . yes 684 .
srip6483 chr1 218182567 218182567 - L1-Ta germline . no 684 .
srip7058 chr1 228058514 228058514 - L1-Ta germline . yes 684 .
srip7621 chr10 5293335 5293335 + L1-Ta germline . yes 684 .
srip7930 chr10 19216651 19216651 + L1-Ta germline . no 684 .
srip8728 chr10 32929792 32929792 - L1-Ta germline . no 684 C10orf68
srip8986 chr10 58863547 58863547 - L1-Ta germline . no 684 .
srip10797 chr10 107137008 107137008 - L1-Ta germline . no 684 .
srip11304 chr10 110846814 110846814 + L1-Ta germline . yes 684 .
srip12714 chr11 24355519 24355519 + L1-Ta germline . yes 684 .
srip13079 chr11 26418548 26418548 + L1-Ta germline . no 684 ANO3
srip17412 chr11 99478828 99478828 + L1-Ta germline . yes 684 CNTN5
srip22477 chr12 44501995 44501995 - L1-Ta germline . yes 684 TMEM117
srip23426 chr12 70167057 70167057 - L1-Ta germline . no 684 RAB3IP
srip24065 chr12 79570815 79570815 - L1-Ta germline . no 684 SYT1
srip25309 chr12 98672913 98672913 + L1-Ta germline . yes 684 .
srip27615 chr13 33441812 33441812 - L1-Ta germline . no 684 .
srip28382 chr13 57793451 57793451 - L1-Ta germline . no 684 .
srip28488 chr13 59088395 59088395 + L1-Ta germline . no 684 .
srip32077 chr13 86502081 86502081 + L1-Ta germline . no 684 .
srip32244 chr13 88851194 88851194 - L1-Ta germline . no 684 .
srip32472 chr13 92855881 92855881 + L1-Ta germline . yes 684 GPC5
srip33705 chr13 104704163 104704163 + L1-Ta germline . yes 684 .
srip37034 chr14 48662336 48662336 + L1-Ta germline . no 684 .
srip38988 chr15 20022208 20022208 - L1-Ta germline . no 684 .
srip40800 chr15 51875289 51875289 - L1-Ta germline . no 684 DMXL2
srip40859 chr15 53448042 53448042 - L1-Ta germline . no 684 .
srip42301 chr15 83551535 83551535 - L1-Ta germline . no 684 HOMER2
srip43865 chr16 7925421 7925421 + L1-Ta germline . no 684 .
srip44181 chr16 18832538 18832538 - L1-Ta germline . no 684 SMG1
srip45846 chr16 61079187 61079187 + L1-Ta germline . no 684 .
srip45956 chr16 65729907 65729907 + L1-Ta germline . yes 684 .
srip47245 chr17 28398312 28398312 + L1-Ta germline . no 684 EFCAB5
srip47438 chr17 29659591 29659591 - L1-Ta germline . no 684 NF1
srip48732 chr18 5332408 5332408 - L1-Ta germline . no 684 .
srip50791 chr18 51762741 51762741 - L1-Ta germline . no 684 .
srip51064 chr18 59763726 59763726 - L1-Ta germline . no 684 PIGN
srip51148 chr18 61030433 61030433 - L1-Ta germline . no 684 KDSR
srip51231 chr18 63446487 63446487 - L1-Ta germline . no 684 CDH7
srip51302 chr18 68413712 68413712 - L1-Ta germline . no 684 .
srip51378 chr18 69024727 69024727 + L1-Ta germline . yes 684 .
srip52515 chr19 55091547 55091547 - L1-Ta germline . no 684 LILRA2
srip52562 chr2 988745 988745 - L1-Ta germline . no 684 SNTG2
srip52852 chr2 11930045 11930045 - L1-Ta germline . no 684 LPIN1
srip53607 chr2 23191016 23191016 - L1-Ta germline . no 684 .
srip55652 chr2 73354355 73354355 - L1-Ta germline . no 684 .
srip56135 chr2 82098027 82098027 + L1-Ta germline . no 684 .
srip57012 chr2 108631988 108631988 - L1-Ta germline . no 684 .
srip57415 chr2 118667183 118667183 - L1-Ta germline . no 684 .
srip57625 chr2 126510571 126510571 + L1-Ta germline . yes 684 .
srip57977 chr2 139785112 139785112 - L1-Ta germline . no 684 .
srip58374 chr2 142788891 142788891 - L1-Ta germline . no 684 LRP1B
srip58661 chr2 144624534 144624534 + L1-Ta germline . yes 684 .
srip59477 chr2 153864262 153864262 - L1-Ta germline . no 684 .
srip59840 chr2 170111155 170111155 + L1-Ta germline . yes 684 LRP2
srip61338 chr2 205631655 205631655 - L1-Ta germline . no 684 PARD3B
srip61771 chr2 214647628 214647628 - L1-Ta germline . no 684 SPAG16
srip61838 chr2 218176494 218176494 + L1-Ta germline . yes 684 DIRC3
srip61986 chr2 221503730 221503730 - L1-Ta germline . no 684 .
srip62711 chr2 239902375 239902375 - L1-Ta germline . no 684 .
srip63256 chr20 11619480 11619480 + L1-Ta germline . no 684 .
srip63308 chr20 12781652 12781652 - L1-Ta germline . no 684 .
srip63993 chr20 23412776 23412776 + L1-Ta germline . yes 684 .
srip65167 chr20 51779972 51779972 - L1-Ta germline . yes 684 TSHZ2
srip65901 chr21 19517309 19517309 - L1-Ta germline . no 684 .
srip66077 chr21 20381800 20381800 + L1-Ta germline . no 684 .
srip66540 chr21 24125137 24125137 + L1-Ta germline . yes 684 .
srip67748 chr22 22715585 22715585 + L1-Ta germline . no 684 IGL@
srip68253 chr22 29065287 29065287 + L1-Ta germline . yes 684 TTC28
srip69701 chr3 656444 656444 - L1-Ta germline validated no 684 .
srip70861 chr3 25740941 25740941 - L1-Ta germline . no 684 .
srip70920 chr3 26439488 26439488 - L1-Ta germline . no 684 .
srip71206 chr3 27135216 27135216 + L1-Ta germline . no 684 .
srip71378 chr3 33554072 33554072 + L1-Ta germline . no 684 CLASP2
srip72029 chr3 43262675 43262675 + L1-Ta germline validated no 684 .
srip72133 chr3 46824583 46824583 - L1-Ta germline . no 684 .
srip73365 chr3 59852889 59852889 + L1-Ta germline . no 684 FHIT
srip74620 chr3 81770349 81770349 + L1-Ta germline . yes 684 GBE1
srip76404 chr3 103275235 103275235 - L1-Ta germline . no 684 .
srip76506 chr3 105473860 105473860 - L1-Ta germline . no 684 CBLB
srip76675 chr3 109836400 109836400 - L1-Ta germline . no 684 .
srip76900 chr3 121120741 121120741 + L1-Ta germline . yes 684 STXBP5L
srip77118 chr3 123590712 123590712 + L1-Ta germline validated no 684 MYLK
srip77394 chr3 129972765 129972765 + L1-Ta germline . yes 684 COL6A4P2
srip77591 chr3 132664831 132664831 - L1-Ta germline . no 684 .
srip78942 chr3 154632590 154632590 + L1-Ta germline . yes 684 .
srip79243 chr3 158813156 158813156 - L1-Ta germline . yes 684 IQCJ;IQCJ-SCHIP1
srip80935 chr3 182952475 182952475 - L1-Ta germline . no 684 MCF2L2
srip81394 chr3 186372123 186372123 + L1-Ta germline . no 684 .
srip81620 chr3 187835306 187835306 - L1-Ta germline . no 684 .
srip82644 chr4 15849204 15849204 + L1-Ta germline . no 684 CD38
srip82719 chr4 16950725 16950725 + L1-Ta germline . yes 684 .
srip83314 chr4 19170950 19170950 + L1-Ta germline . no 684 .
srip83624 chr4 26929329 26929329 + L1-Ta germline . no 684 STIM2
srip84576 chr4 46799112 46799112 + L1-Ta germline . yes 684 COX7B2
srip84625 chr4 46883027 46883027 + L1-Ta germline . no 684 .
srip84678 chr4 47007779 47007779 - L1-Ta germline . no 684 .
srip85024 chr4 48738022 48738022 + L1-Ta germline . no 684 FRYL
srip85055 chr4 49057917 49057917 - L1-Ta germline . no 684 CWH43
srip85882 chr4 59442445 59442445 - L1-Ta germline . no 684 .
srip87086 chr4 71200089 71200089 + L1-Ta germline . no 684 .
srip87189 chr4 79032904 79032904 + L1-Ta germline . yes 684 FRAS1
srip87443 chr4 80864880 80864880 + L1-Ta germline . yes 684 ANTXR2
srip87482 chr4 80894074 80894074 + L1-Ta germline . yes 684 ANTXR2
srip87741 chr4 82931377 82931377 + L1-Ta germline . yes 684 .
srip87920 chr4 86815268 86815268 + L1-Ta germline . no 684 ARHGAP24
srip88075 chr4 88486275 88486275 + L1-Ta germline . yes 684 .
srip88364 chr4 99513572 99513572 - L1-Ta germline . no 684 TSPAN5
srip89295 chr4 107492188 107492188 - L1-Ta germline . no 684 .
srip90851 chr4 120869874 120869874 - L1-Ta germline . no 684 .
srip91178 chr4 127596258 127596258 + L1-Ta germline . no 684 .
srip92329 chr4 136006539 136006539 + L1-Ta germline . no 684 .
srip93184 chr4 147543284 147543284 + L1-Ta germline . no 684 .
srip94162 chr4 167369021 167369021 - L1-Ta germline . no 684 .
srip94540 chr4 170436610 170436610 - L1-Ta germline . no 684 NEK1
srip94579 chr4 172217522 172217522 - L1-Ta germline . no 684 .
srip96417 chr5 12197468 12197468 - L1-Ta germline . yes 684 .
srip97799 chr5 33633345 33633345 - L1-Ta germline . no 684 ADAMTS12
srip98146 chr5 34153955 34153955 + L1-Ta germline . yes 684 .
srip98852 chr5 51488295 51488295 - L1-Ta germline . no 684 .
srip99139 chr5 57686046 57686046 + L1-Ta germline . no 684 .
srip101464 chr5 99981611 99981611 + L1-Ta germline . yes 684 .
srip101538 chr5 105483500 105483500 - L1-Ta germline . no 684 .
srip102599 chr5 110474800 110474800 + L1-Ta germline . yes 684 .
srip102630 chr5 110643939 110643939 + L1-Ta germline . yes 684 CAMK4
srip103954 chr5 138420464 138420464 + L1-Ta germline . yes 684 SIL1
srip104278 chr5 144473640 144473640 + L1-Ta germline . no 684 .
srip104938 chr5 155488954 155488954 - L1-Ta germline . yes 684 .
srip105153 chr5 155619862 155619862 + L1-Ta germline . no 684 .
srip105318 chr5 157867289 157867289 - L1-Ta germline . no 684 .
srip105559 chr5 159351193 159351193 - L1-Ta germline . no 684 ADRA1B
srip106078 chr5 172829796 172829796 - L1-Ta germline . no 684 .
srip106643 chr6 2418002 2418002 - L1-Ta germline . no 684 .
srip107708 chr6 18910854 18910854 - L1-Ta germline . no 684 .
srip108229 chr6 39645329 39645329 - L1-Ta germline . yes 684 KIF6
srip109864 chr6 66787597 66787597 - L1-Ta germline . no 684 .
srip109901 chr6 67313668 67313668 + L1-Ta germline . yes 684 .
srip110433 chr6 74865444 74865444 - L1-Ta germline . no 684 .
srip112033 chr6 91669505 91669505 - L1-Ta germline . no 684 .
srip112950 chr6 113030984 113030984 + L1-Ta germline . no 684 LOC100287612
srip113116 chr6 115899917 115899917 - L1-Ta germline . no 684 .
srip113606 chr6 136712687 136712687 + L1-Ta germline . yes 684 MAP7
srip114948 chr6 156361300 156361300 + L1-Ta germline . no 684 .
srip116472 chr7 24277751 24277751 + L1-Ta germline . no 684 .
srip116559 chr7 25081462 25081462 - L1-Ta germline . no 684 .
srip116678 chr7 28783416 28783416 - L1-Ta germline . no 684 CREB5
srip116746 chr7 30484894 30484894 + L1-Ta germline . no 684 NOD1
srip117127 chr7 45733735 45733735 + L1-Ta germline . no 684 ADCY1
srip118591 chr7 69668336 69668336 + L1-Ta germline . yes 684 AUTS2
srip119666 chr7 84901721 84901721 - L1-Ta germline . no 684 .
srip121462 chr7 107829247 107829247 + L1-Ta germline . no 684 NRCAM
srip122099 chr7 109548699 109548699 + L1-Ta germline . no 684 .
srip122347 chr7 111609264 111609264 + L1-Ta germline . yes 684 DOCK4
srip122511 chr7 113139394 113139394 + L1-Ta germline . yes 684 .
srip123034 chr7 129507566 129507566 + L1-Ta germline . no 684 UBE2H
srip123091 chr7 130386823 130386823 - L1-Ta germline . no 684 .
srip123679 chr7 147539649 147539649 - L1-Ta germline . no 684 CNTNAP2
srip123709 chr7 154155053 154155053 + L1-Ta germline . yes 684 DPP6
srip124363 chr8 5829277 5829277 - L1-Ta germline . no 684 .
srip124813 chr8 9597567 9597567 + L1-Ta germline . yes 684 TNKS
srip125643 chr8 28977684 28977684 - L1-Ta germline . no 684 KIF13B
srip126996 chr8 71583563 71583563 - L1-Ta germline . no 684 XKR9
srip128151 chr8 85428607 85428607 + L1-Ta germline . no 684 RALYL
srip128951 chr8 114072203 114072203 - L1-Ta germline . no 684 CSMD3
srip129806 chr8 126601133 126601133 + L1-Ta germline . yes 684 .
srip130432 chr8 137450317 137450317 - L1-Ta germline . yes 684 .
srip131648 chr9 10137698 10137698 + L1-Ta germline . yes 684 PTPRD
srip133225 chr9 32463884 32463884 - L1-Ta germline . no 684 DDX58
srip134141 chr9 80014129 80014129 + L1-Ta germline . no 684 VPS13A
srip134255 chr9 82866814 82866814 + L1-Ta germline . no 684 .
srip134314 chr9 86065262 86065262 - L1-Ta germline . no 684 FRMD3
srip134607 chr9 98465870 98465870 + L1-Ta germline . yes 684 .
srip134818 chr9 103749297 103749297 + L1-Ta germline . no 684 .
srip134843 chr9 104443975 104443975 - L1-Ta germline . no 684 GRIN3A
srip136358 chrX 11731399 11731399 + L1-Ta germline . yes 684 .
srip137029 chrX 49731196 49731196 - L1-Ta germline . no 684 CLCN5
srip137067 chrX 49784005 49784005 - L1-Ta germline . no 684 CLCN5
srip138381 chrX 67263241 67263241 + L1-Ta germline . no 684 OPHN1
srip138500 chrX 72606851 72606851 + L1-Ta germline . no 684 .
srip138767 chrX 75543182 75543182 - L1-Ta germline . no 684 .
srip139052 chrX 75949601 75949601 + L1-Ta germline . no 684 .
srip139173 chrX 81102668 81102668 + L1-Ta germline . yes 684 .
srip139350 chrX 85609830 85609830 + L1-Ta germline . yes 684 DACH2
srip139538 chrX 94857127 94857127 + L1-Ta germline . yes 684 .
srip140178 chrX 105718545 105718545 + L1-Ta germline . yes 684 .
srip140258 chrX 111229525 111229525 - L1-Ta germline . no 684 TRPC5
srip140797 chrX 119892835 119892835 - L1-Ta germline . no 684 .
srip140865 chrX 120397638 120397638 - L1-Ta germline . no 684 .
srip141456 chrX 130140534 130140534 + L1-Ta germline . no 684 .
srip141640 chrX 137146500 137146500 + L1-Ta germline . no 684 .
srip142152 chrX 154745667 154745667 - L1-Ta germline . no 684 TMLHE