euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

226 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip922 chr1 56834937 56834937 + L1-Ta germline . yes 680 .
srip1656 chr1 74984526 74984526 - L1-Ta germline . no 680 FPGT-TNNI3K;TNNI3K
srip2163 chr1 86398798 86398798 + L1-Ta germline . no 680 COL24A1
srip2251 chr1 87144762 87144762 - L1-Ta germline . no 680 .
srip2603 chr1 99678977 99678977 - L1-Ta germline . no 680 .
srip2655 chr1 99854086 99854086 - L1-Ta germline . no 680 .
srip2881 chr1 102350001 102350001 - L1-Ta somatic validated no 680 DNAJA1P5;OLFM3
srip3257 chr1 105386449 105386449 - L1-Ta germline . no 680 .
srip3984 chr1 121478354 121478354 + L1-Ta germline . yes 680 .
srip4103 chr1 149308424 149308424 + L1-Ta germline . no 680 LOC645262
srip4201 chr1 152462236 152462236 - L1-Ta germline . no 680 .
srip4578 chr1 163231881 163231881 - L1-Ta germline . no 680 LOC100505773
srip4808 chr1 165940104 165940104 - L1-Ta germline . yes 680 .
srip6146 chr1 193836827 193836827 + L1-Ta germline . yes 680 .
srip6513 chr1 218246475 218246475 + L1-Ta germline . yes 680 .
srip6973 chr1 223491176 223491176 - L1-Ta germline . yes 680 SUSD4
srip7055 chr1 228058514 228058514 - L1-Ta germline . yes 680 .
srip7198 chr1 237182726 237182726 - L1-Ta germline . no 680 .
srip7617 chr10 5293335 5293335 + L1-Ta germline . yes 680 .
srip8724 chr10 32929792 32929792 - L1-Ta germline . no 680 C10orf68
srip8827 chr10 42527965 42527965 + L1-Ta germline . no 680 .
srip8982 chr10 58863547 58863547 - L1-Ta germline . no 680 .
srip9720 chr10 78351510 78351510 + L1-Ta germline . yes 680 .
srip11300 chr10 110846814 110846814 + L1-Ta germline . yes 680 .
srip11330 chr10 111572118 111572118 - L1-Ta germline . no 680 .
srip12711 chr11 24355519 24355519 + L1-Ta germline . yes 680 .
srip15534 chr11 59815986 59815986 - L1-Ta germline . no 680 .
srip16472 chr11 82976149 82976149 + L1-Ta germline . no 680 CCDC90B
srip17408 chr11 99478828 99478828 + L1-Ta germline . yes 680 CNTN5
srip20309 chr12 14335361 14335361 + L1-Ta germline . yes 680 .
srip22473 chr12 44501995 44501995 - L1-Ta germline . yes 680 TMEM117
srip23422 chr12 70167057 70167057 - L1-Ta germline . no 680 RAB3IP
srip24062 chr12 79570815 79570815 - L1-Ta germline . no 680 SYT1
srip24145 chr12 81730893 81730893 - L1-Ta germline validated no 680 PPFIA2
srip24198 chr12 84377238 84377238 + L1-Ta somatic validated no 680 .
srip24969 chr12 86633816 86633816 + L1-Ta germline . yes 680 MGAT4C
srip24980 chr12 87394030 87394030 + L1-Ta germline . no 680 .
srip25306 chr12 98672913 98672913 + L1-Ta germline . yes 680 .
srip25365 chr12 102842494 102842494 + L1-Ta germline . no 680 IGF1
srip27532 chr13 30215833 30215833 - L1-Ta germline . no 680 .
srip27611 chr13 33441812 33441812 - L1-Ta germline . no 680 .
srip27874 chr13 40960823 40960823 + L1-Ta germline validated no 680 TTL
srip28487 chr13 59088395 59088395 + L1-Ta germline . no 680 .
srip28702 chr13 61462318 61462318 - L1-Ta germline . no 680 .
srip29444 chr13 61734484 61734484 + L1-Ta germline . no 680 .
srip32073 chr13 86502081 86502081 + L1-Ta germline . no 680 .
srip32240 chr13 88851194 88851194 - L1-Ta germline . no 680 .
srip33702 chr13 104704163 104704163 + L1-Ta germline . yes 680 .
srip36413 chr14 41197899 41197899 - L1-Ta germline . no 680 .
srip37033 chr14 48662336 48662336 + L1-Ta germline . no 680 .
srip38019 chr14 71020049 71020049 + L1-Ta germline . no 680 .
srip38985 chr15 20022208 20022208 - L1-Ta germline . no 680 .
srip39101 chr15 24383900 24383900 + L1-Ta germline . yes 680 .
srip40796 chr15 51875289 51875289 - L1-Ta germline . no 680 DMXL2
srip40856 chr15 53448042 53448042 - L1-Ta germline . no 680 .
srip40918 chr15 53956096 53956096 + L1-Ta germline . no 680 WDR72
srip41321 chr15 58012013 58012013 - L1-Ta germline . no 680 .
srip41813 chr15 71027483 71027483 + L1-Ta germline . yes 680 UACA
srip42300 chr15 83551535 83551535 - L1-Ta germline . no 680 HOMER2
srip43862 chr16 7925421 7925421 + L1-Ta germline . no 680 .
srip45842 chr16 61079187 61079187 + L1-Ta germline . no 680 .
srip45952 chr16 65729907 65729907 + L1-Ta germline . yes 680 .
srip47434 chr17 29659591 29659591 - L1-Ta germline . no 680 NF1
srip48728 chr18 5332408 5332408 - L1-Ta germline . no 680 .
srip48797 chr18 10768674 10768674 + L1-Ta germline validated no 680 PIEZO2;LOC100421587
srip49537 chr18 30185593 30185593 - L1-Ta germline . no 680 .
srip49742 chr18 34567457 34567457 + L1-Ta germline . yes 680 KIAA1328
srip49803 chr18 42660133 42660133 - L1-Ta germline . yes 680 .
srip50787 chr18 51762741 51762741 - L1-Ta germline . no 680 .
srip51061 chr18 59763726 59763726 - L1-Ta germline . no 680 PIGN
srip51144 chr18 61030433 61030433 - L1-Ta germline . no 680 KDSR
srip51228 chr18 63446487 63446487 - L1-Ta germline . no 680 CDH7
srip51298 chr18 68413712 68413712 - L1-Ta germline . no 680 .
srip51374 chr18 69024727 69024727 + L1-Ta germline . yes 680 .
srip51401 chr18 69617341 69617341 + L1-Ta germline . no 680 .
srip52512 chr19 55091547 55091547 - L1-Ta germline . no 680 LILRA2
srip54385 chr2 41777137 41777137 - L1-Ta germline . no 680 .
srip55648 chr2 73354355 73354355 - L1-Ta germline . no 680 .
srip55964 chr2 81834768 81834768 - L1-Ta germline . no 680 .
srip56316 chr2 83068216 83068216 + L1-Ta germline . yes 680 .
srip57008 chr2 108631988 108631988 - L1-Ta germline . no 680 .
srip57346 chr2 116246475 116246475 + L1-Ta germline . no 680 DPP10
srip57411 chr2 118667183 118667183 - L1-Ta germline . no 680 .
srip57622 chr2 126510571 126510571 + L1-Ta germline . yes 680 .
srip58370 chr2 142788891 142788891 - L1-Ta germline . no 680 LRP1B
srip58657 chr2 144624534 144624534 + L1-Ta germline . yes 680 .
srip59474 chr2 153864262 153864262 - L1-Ta germline . no 680 .
srip60878 chr2 194077137 194077137 - L1-Ta germline . no 680 .
srip61767 chr2 214647628 214647628 - L1-Ta germline . no 680 SPAG16
srip61834 chr2 218176494 218176494 + L1-Ta germline . yes 680 DIRC3
srip62707 chr2 239902375 239902375 - L1-Ta germline . no 680 .
srip63304 chr20 12781652 12781652 - L1-Ta germline . no 680 .
srip63683 chr20 19400466 19400466 - L1-Ta germline . no 680 SLC24A3
srip63990 chr20 23412776 23412776 + L1-Ta germline . yes 680 .
srip66536 chr21 24125137 24125137 + L1-Ta germline . yes 680 .
srip67485 chr22 22486374 22486374 - L1-Ta germline . no 680 IGL@
srip67745 chr22 22715585 22715585 + L1-Ta germline . no 680 IGL@
srip68249 chr22 29065287 29065287 + L1-Ta germline . yes 680 TTC28
srip69697 chr3 656444 656444 - L1-Ta germline validated no 680 .
srip69763 chr3 2050178 2050178 + L1-Ta germline . yes 680 .
srip69878 chr3 4080917 4080917 - L1-Ta germline . yes 680 .
srip70641 chr3 22097802 22097802 + L1-Ta germline . no 680 LOC100505836
srip71374 chr3 33554072 33554072 + L1-Ta germline . no 680 CLASP2
srip72000 chr3 41821477 41821477 + L1-Ta germline . yes 680 ULK4
srip75574 chr3 85576552 85576552 + L1-Ta germline . no 680 CADM2
srip76401 chr3 103275235 103275235 - L1-Ta germline . no 680 .
srip76502 chr3 105473860 105473860 - L1-Ta germline . no 680 CBLB
srip76671 chr3 109836400 109836400 - L1-Ta germline . no 680 .
srip76787 chr3 116084880 116084880 + L1-Ta germline . no 680 LSAMP-AS1;LSAMP
srip77319 chr3 125059586 125059586 - L1-Ta germline . no 680 ZNF148
srip77390 chr3 129972765 129972765 + L1-Ta germline . yes 680 COL6A4P2
srip77587 chr3 132664831 132664831 - L1-Ta germline . no 680 .
srip77832 chr3 137073450 137073450 + L1-Ta germline . no 680 .
srip78876 chr3 152701320 152701320 + L1-Ta germline . no 680 .
srip78939 chr3 154632590 154632590 + L1-Ta germline . yes 680 .
srip79239 chr3 158813156 158813156 - L1-Ta germline . yes 680 IQCJ;IQCJ-SCHIP1
srip80333 chr3 176091321 176091321 + L1-Ta germline . no 680 .
srip80932 chr3 182952475 182952475 - L1-Ta germline . no 680 MCF2L2
srip81392 chr3 186372123 186372123 + L1-Ta germline . no 680 .
srip81617 chr3 187835306 187835306 - L1-Ta germline . no 680 .
srip82640 chr4 15849204 15849204 + L1-Ta germline . no 680 CD38
srip82716 chr4 16950725 16950725 + L1-Ta germline . yes 680 .
srip83310 chr4 19170950 19170950 + L1-Ta germline . no 680 .
srip83620 chr4 26929329 26929329 + L1-Ta germline . no 680 STIM2
srip84573 chr4 46799112 46799112 + L1-Ta germline . yes 680 COX7B2
srip84622 chr4 46883027 46883027 + L1-Ta germline . no 680 .
srip84954 chr4 48416463 48416463 - L1-Ta germline . no 680 SLAIN2
srip85021 chr4 48738022 48738022 + L1-Ta germline . no 680 FRYL
srip85053 chr4 49057917 49057917 - L1-Ta germline . no 680 CWH43
srip85626 chr4 58888335 58888335 + L1-Ta germline . no 680 .
srip85878 chr4 59442445 59442445 - L1-Ta germline . no 680 .
srip86332 chr4 66809073 66809073 - L1-Ta germline . no 680 .
srip87083 chr4 71200089 71200089 + L1-Ta germline . no 680 .
srip87186 chr4 79032904 79032904 + L1-Ta germline . yes 680 FRAS1
srip87440 chr4 80864880 80864880 + L1-Ta germline . yes 680 ANTXR2
srip87478 chr4 80894074 80894074 + L1-Ta germline . yes 680 ANTXR2
srip88073 chr4 88486275 88486275 + L1-Ta germline . yes 680 .
srip88103 chr4 92905376 92905376 + L1-Ta germline . yes 680 .
srip88152 chr4 98103815 98103815 - L1-Ta germline validated no 680 .
srip88362 chr4 99513572 99513572 - L1-Ta germline . no 680 TSPAN5
srip89291 chr4 107492188 107492188 - L1-Ta germline . no 680 .
srip90847 chr4 120869874 120869874 - L1-Ta germline . no 680 .
srip91226 chr4 128965434 128965434 - L1-Ta germline . no 680 .
srip92325 chr4 136006539 136006539 + L1-Ta germline . no 680 .
srip93180 chr4 147543284 147543284 + L1-Ta germline . no 680 .
srip94158 chr4 167369021 167369021 - L1-Ta germline . no 680 .
srip94536 chr4 170436610 170436610 - L1-Ta germline . no 680 NEK1
srip95124 chr4 182695155 182695155 - L1-Ta germline . no 680 .
srip96870 chr5 20644380 20644380 - L1-Ta germline . no 680 .
srip98300 chr5 41403382 41403382 - L1-Ta germline . no 680 PLCXD3
srip99087 chr5 57279515 57279515 + L1-Ta germline validated no 680 .
srip101460 chr5 99981611 99981611 + L1-Ta germline . yes 680 .
srip101535 chr5 105483500 105483500 - L1-Ta germline . no 680 .
srip102596 chr5 110474800 110474800 + L1-Ta germline . yes 680 .
srip102826 chr5 118941211 118941211 + L1-Ta germline . no 680 .
srip103294 chr5 125040040 125040040 + L1-Ta germline . no 680 .
srip103950 chr5 138420464 138420464 + L1-Ta germline . yes 680 SIL1
srip104274 chr5 144473640 144473640 + L1-Ta germline . no 680 .
srip104370 chr5 147337963 147337963 - L1-Ta germline . no 680 .
srip104934 chr5 155488954 155488954 - L1-Ta germline . yes 680 .
srip106075 chr5 172829796 172829796 - L1-Ta germline . no 680 .
srip106639 chr6 2418002 2418002 - L1-Ta germline . no 680 .
srip107704 chr6 18910854 18910854 - L1-Ta germline . no 680 .
srip108225 chr6 39645329 39645329 - L1-Ta germline . yes 680 KIF6
srip108791 chr6 50611605 50611605 - L1-Ta germline . no 680 .
srip108888 chr6 55594843 55594843 - L1-Ta germline . no 680 .
srip109861 chr6 66787597 66787597 - L1-Ta germline . no 680 .
srip109897 chr6 67313668 67313668 + L1-Ta germline . yes 680 .
srip110158 chr6 70726265 70726265 + L1-Ta germline . yes 680 COL19A1
srip110385 chr6 73995229 73995229 - L1-Ta germline . no 680 C6orf147
srip111375 chr6 84049691 84049691 + L1-Ta germline . yes 680 ME1
srip112946 chr6 113030984 113030984 + L1-Ta germline . no 680 LOC100287612
srip113112 chr6 115899917 115899917 - L1-Ta germline . no 680 .
srip113602 chr6 136712687 136712687 + L1-Ta germline . yes 680 MAP7
srip114183 chr6 145500938 145500938 - L1-Ta germline . no 680 .
srip114944 chr6 156361300 156361300 + L1-Ta germline . no 680 .
srip115765 chr6 162404960 162404960 + L1-Ta germline . no 680 PARK2
srip116555 chr7 25081462 25081462 - L1-Ta germline . no 680 .
srip116674 chr7 28783416 28783416 - L1-Ta germline . no 680 CREB5
srip116742 chr7 30484894 30484894 + L1-Ta germline . no 680 NOD1
srip118587 chr7 69668336 69668336 + L1-Ta germline . yes 680 AUTS2
srip118643 chr7 69828469 69828469 + L1-Ta germline . no 680 AUTS2
srip120774 chr7 93146616 93146616 - L1-Ta germline . no 680 CALCR
srip121458 chr7 107829247 107829247 + L1-Ta germline . no 680 NRCAM
srip122095 chr7 109548699 109548699 + L1-Ta germline . no 680 .
srip122344 chr7 111609264 111609264 + L1-Ta germline . yes 680 DOCK4
srip122967 chr7 127930833 127930833 - L1-Ta germline . no 680 .
srip123030 chr7 129507566 129507566 + L1-Ta germline . no 680 UBE2H
srip123087 chr7 130386823 130386823 - L1-Ta germline . no 680 .
srip123478 chr7 145063368 145063368 + L1-Ta germline . yes 680 .
srip124809 chr8 9597567 9597567 + L1-Ta germline . yes 680 TNKS
srip125027 chr8 18768149 18768149 + L1-Ta germline . yes 680 PSD3
srip125660 chr8 31000384 31000384 + L1-Ta somatic validated no 680 WRN
srip128947 chr8 114072203 114072203 - L1-Ta germline . no 680 CSMD3
srip129006 chr8 115773124 115773124 + L1-Ta germline validated no 680 .
srip130521 chr9 1337904 1337904 - L1-Ta germline . no 680 .
srip130720 chr9 5491409 5491409 + L1-Ta germline . no 680 .
srip131682 chr9 12556845 12556845 - L1-Ta germline . no 680 .
srip131714 chr9 17193066 17193066 + L1-Ta germline . no 680 CNTLN
srip131918 chr9 28111894 28111894 - L1-Ta germline . yes 680 LINGO2
srip132421 chr9 30674435 30674435 - L1-Ta germline . no 680 .
srip133222 chr9 32463884 32463884 - L1-Ta germline . no 680 DDX58
srip134137 chr9 80014129 80014129 + L1-Ta germline . no 680 VPS13A
srip134252 chr9 82866814 82866814 + L1-Ta germline . no 680 .
srip134310 chr9 86065262 86065262 - L1-Ta germline . no 680 FRMD3
srip134603 chr9 98465870 98465870 + L1-Ta germline . yes 680 .
srip134814 chr9 103749297 103749297 + L1-Ta germline . no 680 .
srip134841 chr9 104443975 104443975 - L1-Ta germline . no 680 GRIN3A
srip135116 chr9 105162482 105162482 - L1-Ta germline . no 680 .
srip135228 chr9 106501597 106501597 - L1-Ta germline . no 680 .
srip135638 chr9 113185472 113185472 + L1-Ta germline . no 680 SVEP1
srip137653 chrX 58162873 58162873 + L1-Ta germline . no 680 .
srip138011 chrX 63233094 63233094 - L1-Ta germline . no 680 .
srip138763 chrX 75543182 75543182 - L1-Ta germline . no 680 .
srip139048 chrX 75949601 75949601 + L1-Ta germline . no 680 .
srip139121 chrX 77696853 77696853 - L1-Ta germline . no 680 .
srip139535 chrX 94857127 94857127 + L1-Ta germline . yes 680 .
srip140568 chrX 117098155 117098155 + L1-Ta germline . yes 680 KLHL13
srip140637 chrX 118569413 118569413 - L1-Ta germline . no 680 SLC25A43
srip140862 chrX 120397638 120397638 - L1-Ta germline . no 680 .
srip141453 chrX 130140534 130140534 + L1-Ta germline . no 680 .
srip141501 chrX 134162047 134162047 + L1-Ta germline . no 680 .
srip141636 chrX 137146500 137146500 + L1-Ta germline . no 680 .
srip141989 chrX 141571641 141571641 + L1-Ta germline . yes 680 .
srip142148 chrX 154745667 154745667 - L1-Ta germline . no 680 TMLHE
srip142305 chrY 13546967 13546967 - L1-Ta germline . no 680 .