euL1db
The European database of L1-HS retrotransposon insertions in humans

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   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

277 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip102 chr1 18651443 18651443 - L1-Ta germline . no 676 IGSF21
srip1234 chr1 67544154 67544154 - L1-Ta germline . no 676 .
srip1653 chr1 74984526 74984526 - L1-Ta germline . no 676 FPGT-TNNI3K;TNNI3K
srip1682 chr1 75192713 75192713 - L1-Ta germline . no 676 CRYZ
srip2160 chr1 86398798 86398798 + L1-Ta germline . no 676 COL24A1
srip2247 chr1 87144762 87144762 - L1-Ta germline . no 676 .
srip2599 chr1 99678977 99678977 - L1-Ta germline . no 676 .
srip3253 chr1 105386449 105386449 - L1-Ta germline . no 676 .
srip3981 chr1 121478354 121478354 + L1-Ta germline . yes 676 .
srip4298 chr1 158238664 158238664 + L1-Ta germline . yes 676 .
srip4806 chr1 165940104 165940104 - L1-Ta germline . yes 676 .
srip4842 chr1 166212290 166212290 - L1-Ta germline . yes 676 .
srip5292 chr1 179575336 179575336 - L1-Ta germline . no 676 TDRD5
srip5521 chr1 180668321 180668321 - L1-Ta germline . no 676 XPR1
srip5832 chr1 192072266 192072266 - L1-Ta germline . no 676 .
srip6142 chr1 193836827 193836827 + L1-Ta germline . yes 676 .
srip6972 chr1 223491176 223491176 - L1-Ta germline . yes 676 SUSD4
srip7052 chr1 228058514 228058514 - L1-Ta germline . yes 676 .
srip7615 chr10 5293335 5293335 + L1-Ta germline . yes 676 .
srip8485 chr10 25707697 25707697 - L1-Ta germline . no 676 GPR158
srip8721 chr10 32929792 32929792 - L1-Ta germline . no 676 C10orf68
srip8980 chr10 58863547 58863547 - L1-Ta germline . no 676 .
srip9718 chr10 78351510 78351510 + L1-Ta germline . yes 676 .
srip10793 chr10 107137008 107137008 - L1-Ta germline . no 676 .
srip11298 chr10 110846814 110846814 + L1-Ta germline . yes 676 .
srip12622 chr11 15995864 15995864 - L1-Ta germline . no 676 SOX6
srip13077 chr11 26418548 26418548 + L1-Ta germline . no 676 ANO3
srip13344 chr11 31603026 31603026 + L1-Ta germline . no 676 ELP4
srip13672 chr11 33670122 33670122 + L1-Ta germline validated no 676 C11orf41
srip13941 chr11 39225154 39225154 - L1-Ta germline . no 676 .
srip15532 chr11 59815986 59815986 - L1-Ta germline . no 676 .
srip16791 chr11 87409016 87409016 - L1-Ta germline . no 676 .
srip16853 chr11 92875927 92875927 + L1-Ta germline . no 676 .
srip17404 chr11 99478828 99478828 + L1-Ta germline . yes 676 CNTN5
srip17748 chr11 104556130 104556130 - L1-Ta germline . no 676 .
srip18302 chr11 115209587 115209587 - L1-Ta germline . no 676 CADM1
srip20307 chr12 14335361 14335361 + L1-Ta germline . yes 676 .
srip20320 chr12 15005884 15005884 - L1-Ta germline . no 676 .
srip21079 chr12 33325803 33325803 - L1-Ta germline . no 676 .
srip22425 chr12 43979629 43979629 + L1-Ta germline . no 676 .
srip22470 chr12 44501995 44501995 - L1-Ta germline . yes 676 TMEM117
srip23419 chr12 70167057 70167057 - L1-Ta germline . no 676 RAB3IP
srip24216 chr12 84955173 84955173 - L1-Ta germline . no 676 .
srip25302 chr12 98672913 98672913 + L1-Ta germline . yes 676 .
srip26135 chr12 126783235 126783235 - L1-Ta germline . no 676 .
srip27529 chr13 30215833 30215833 - L1-Ta germline . no 676 .
srip27609 chr13 33441812 33441812 - L1-Ta germline . no 676 .
srip27862 chr13 40212304 40212304 - L1-Ta germline . no 676 .
srip28376 chr13 57793451 57793451 - L1-Ta germline . no 676 .
srip28484 chr13 59088395 59088395 + L1-Ta germline . no 676 .
srip32069 chr13 86502081 86502081 + L1-Ta germline . no 676 .
srip32237 chr13 88851194 88851194 - L1-Ta germline . no 676 .
srip32465 chr13 92855881 92855881 + L1-Ta germline . yes 676 GPC5
srip33698 chr13 104704163 104704163 + L1-Ta germline . yes 676 .
srip34405 chr14 24582584 24582584 + L1-Ta germline . yes 676 .
srip36107 chr14 39765795 39765795 - L1-Ta germline . no 676 CTAGE5
srip36338 chr14 39875096 39875096 + L1-Ta germline validated no 676 FBXO33
srip36365 chr14 40098407 40098407 - L1-Ta germline . no 676 .
srip37031 chr14 48662336 48662336 + L1-Ta germline . no 676 .
srip37326 chr14 59220391 59220391 + L1-Ta germline . no 676 .
srip38016 chr14 71020049 71020049 + L1-Ta germline . no 676 .
srip38905 chr14 95605326 95605326 + L1-Ta germline . no 676 DICER1
srip38983 chr15 20022208 20022208 - L1-Ta germline . no 676 .
srip39099 chr15 24383900 24383900 + L1-Ta germline . yes 676 .
srip39964 chr15 47507271 47507271 - L1-Ta germline . no 676 SEMA6D
srip40727 chr15 51843811 51843811 + L1-Ta germline . no 676 DMXL2
srip40792 chr15 51875289 51875289 - L1-Ta germline . no 676 DMXL2
srip40852 chr15 53448042 53448042 - L1-Ta germline . no 676 .
srip41318 chr15 58012013 58012013 - L1-Ta germline . no 676 .
srip41688 chr15 61756182 61756182 + L1-Ta germline . no 676 .
srip42298 chr15 83551535 83551535 - L1-Ta germline . no 676 HOMER2
srip45840 chr16 61079187 61079187 + L1-Ta germline . no 676 .
srip45949 chr16 65729907 65729907 + L1-Ta germline . yes 676 .
srip47243 chr17 28398312 28398312 + L1-Ta germline . no 676 EFCAB5
srip47500 chr17 32192799 32192799 + L1-Ta germline . yes 676 ACCN1
srip48670 chr18 2728851 2728851 - L1-Ta germline . no 676 SMCHD1
srip48724 chr18 5332408 5332408 - L1-Ta germline . no 676 .
srip49533 chr18 30185593 30185593 - L1-Ta germline . no 676 .
srip49740 chr18 34567457 34567457 + L1-Ta germline . yes 676 KIAA1328
srip50785 chr18 51762741 51762741 - L1-Ta germline . no 676 .
srip50814 chr18 51956938 51956938 + L1-Ta germline . yes 676 .
srip50875 chr18 58172211 58172211 - L1-Ta germline . no 676 .
srip51058 chr18 59763726 59763726 - L1-Ta germline . no 676 PIGN
srip51140 chr18 61030433 61030433 - L1-Ta germline . no 676 KDSR
srip51225 chr18 63446487 63446487 - L1-Ta germline . no 676 CDH7
srip51297 chr18 68413712 68413712 - L1-Ta germline . no 676 .
srip51370 chr18 69024727 69024727 + L1-Ta germline . yes 676 .
srip52204 chr19 27735992 27735992 - L1-Ta germline . no 676 .
srip52399 chr19 43556939 43556939 + L1-Ta germline . no 676 .
srip52471 chr19 54171205 54171205 + L1-Ta germline validated no 676 .
srip53605 chr2 23191016 23191016 - L1-Ta germline . no 676 .
srip54384 chr2 41777137 41777137 - L1-Ta germline . no 676 .
srip54575 chr2 42051402 42051402 + L1-Ta germline . no 676 .
srip55645 chr2 73354355 73354355 - L1-Ta germline . no 676 .
srip55962 chr2 81834768 81834768 - L1-Ta germline . no 676 .
srip56130 chr2 82098027 82098027 + L1-Ta germline . no 676 .
srip56313 chr2 83068216 83068216 + L1-Ta germline . yes 676 .
srip56573 chr2 88206937 88206937 + L1-Ta germline . yes 676 .
srip57004 chr2 108631988 108631988 - L1-Ta germline . no 676 .
srip57343 chr2 116246475 116246475 + L1-Ta germline . no 676 DPP10
srip57409 chr2 118667183 118667183 - L1-Ta germline . no 676 .
srip57620 chr2 126510571 126510571 + L1-Ta germline . yes 676 .
srip57973 chr2 139785112 139785112 - L1-Ta germline . no 676 .
srip58654 chr2 144624534 144624534 + L1-Ta germline . yes 676 .
srip59471 chr2 153864262 153864262 - L1-Ta germline . no 676 .
srip59837 chr2 170111155 170111155 + L1-Ta germline . yes 676 LRP2
srip59941 chr2 176346680 176346680 - L1-Ta germline . no 676 .
srip61331 chr2 205631655 205631655 - L1-Ta germline . no 676 PARD3B
srip61379 chr2 207092371 207092371 - L1-Ta germline . no 676 .
srip61763 chr2 214647628 214647628 - L1-Ta germline . no 676 SPAG16
srip61831 chr2 218176494 218176494 + L1-Ta germline . yes 676 DIRC3
srip62731 chr20 1231059 1231059 - L1-Ta germline . no 676 RAD21L1
srip63014 chr20 7096788 7096788 - L1-Ta germline . no 676 .
srip63302 chr20 12781652 12781652 - L1-Ta germline . no 676 .
srip63682 chr20 19400466 19400466 - L1-Ta germline . no 676 SLC24A3
srip63987 chr20 23412776 23412776 + L1-Ta germline . yes 676 .
srip65163 chr20 51779972 51779972 - L1-Ta germline . yes 676 TSHZ2
srip65177 chr20 51886355 51886355 + L1-Ta germline . no 676 TSHZ2
srip66074 chr21 20381800 20381800 + L1-Ta germline . no 676 .
srip66532 chr21 24125137 24125137 + L1-Ta germline . yes 676 .
srip67743 chr22 22715585 22715585 + L1-Ta germline . no 676 IGL@
srip68245 chr22 29065287 29065287 + L1-Ta germline . yes 676 TTC28
srip68789 chr22 44324601 44324601 - L1-Ta germline . no 676 PNPLA3
srip69693 chr3 656444 656444 - L1-Ta germline validated no 676 .
srip69759 chr3 2050178 2050178 + L1-Ta germline . yes 676 .
srip70639 chr3 22097802 22097802 + L1-Ta germline . no 676 LOC100505836
srip70914 chr3 26439488 26439488 - L1-Ta germline . no 676 .
srip71371 chr3 33554072 33554072 + L1-Ta germline . no 676 CLASP2
srip71412 chr3 34694359 34694359 - L1-Ta germline . yes 676 .
srip72128 chr3 46824583 46824583 - L1-Ta germline . no 676 .
srip73358 chr3 59852889 59852889 + L1-Ta germline . no 676 FHIT
srip74614 chr3 81770349 81770349 + L1-Ta germline . yes 676 GBE1
srip76397 chr3 103275235 103275235 - L1-Ta germline . no 676 .
srip76498 chr3 105473860 105473860 - L1-Ta germline . no 676 CBLB
srip76587 chr3 108924737 108924737 + L1-Ta germline . yes 676 .
srip76668 chr3 109836400 109836400 - L1-Ta germline . no 676 .
srip76783 chr3 116084880 116084880 + L1-Ta germline . no 676 LSAMP-AS1;LSAMP
srip76897 chr3 121120741 121120741 + L1-Ta germline . yes 676 STXBP5L
srip77114 chr3 123590712 123590712 + L1-Ta germline validated no 676 MYLK
srip77386 chr3 129972765 129972765 + L1-Ta germline . yes 676 COL6A4P2
srip77436 chr3 130352893 130352893 + L1-Ta germline . yes 676 COL6A6
srip77585 chr3 132664831 132664831 - L1-Ta germline . no 676 .
srip77781 chr3 136682446 136682446 - L1-Ta germline . no 676 IL20RB
srip77828 chr3 137073450 137073450 + L1-Ta germline . no 676 .
srip79235 chr3 158813156 158813156 - L1-Ta germline . yes 676 IQCJ;IQCJ-SCHIP1
srip80212 chr3 175677955 175677955 - L1-Ta germline . no 676 .
srip80329 chr3 176091321 176091321 + L1-Ta germline . no 676 .
srip80928 chr3 182952475 182952475 - L1-Ta germline . no 676 MCF2L2
srip81389 chr3 186372123 186372123 + L1-Ta germline . no 676 .
srip81613 chr3 187835306 187835306 - L1-Ta germline . no 676 .
srip82284 chr4 5667990 5667990 - L1-Ta germline . no 676 EVC2
srip82338 chr4 7995690 7995690 - L1-Ta germline . no 676 ABLIM2
srip82637 chr4 15849204 15849204 + L1-Ta germline . no 676 CD38
srip83307 chr4 19170950 19170950 + L1-Ta germline . no 676 .
srip83617 chr4 26929329 26929329 + L1-Ta germline . no 676 STIM2
srip83827 chr4 29321850 29321850 + L1-Ta germline . no 676 .
srip84570 chr4 46799112 46799112 + L1-Ta germline . yes 676 COX7B2
srip84618 chr4 46883027 46883027 + L1-Ta germline . no 676 .
srip84675 chr4 47007779 47007779 - L1-Ta germline . no 676 .
srip84952 chr4 48416463 48416463 - L1-Ta germline . no 676 SLAIN2
srip85018 chr4 48738022 48738022 + L1-Ta germline . no 676 FRYL
srip85465 chr4 58087331 58087331 - L1-Ta germline . no 676 .
srip85874 chr4 59442445 59442445 - L1-Ta germline . no 676 .
srip86330 chr4 66809073 66809073 - L1-Ta germline . no 676 .
srip87182 chr4 79032904 79032904 + L1-Ta germline . yes 676 FRAS1
srip87474 chr4 80894074 80894074 + L1-Ta germline . yes 676 ANTXR2
srip88358 chr4 99513572 99513572 - L1-Ta germline . no 676 TSPAN5
srip89288 chr4 107492188 107492188 - L1-Ta germline . no 676 .
srip89487 chr4 108277892 108277892 + L1-Ta germline . no 676 .
srip90325 chr4 115132696 115132696 + L1-Ta germline . no 676 .
srip90845 chr4 120869874 120869874 - L1-Ta germline . no 676 .
srip90867 chr4 121553563 121553563 + L1-Ta germline validated no 676 .
srip92321 chr4 136006539 136006539 + L1-Ta germline . no 676 .
srip93178 chr4 147543284 147543284 + L1-Ta germline . no 676 .
srip93319 chr4 152340401 152340401 - L1-Ta germline . no 676 FAM160A1
srip94156 chr4 167369021 167369021 - L1-Ta germline . no 676 .
srip94472 chr4 170281916 170281916 - L1-Ta germline . no 676 .
srip94532 chr4 170436610 170436610 - L1-Ta germline . no 676 NEK1
srip94574 chr4 172217522 172217522 - L1-Ta germline . no 676 .
srip95120 chr4 182695155 182695155 - L1-Ta germline . no 676 .
srip95741 chr5 7603653 7603653 - L1-Ta germline . no 676 ADCY2
srip96413 chr5 12197468 12197468 - L1-Ta germline . yes 676 .
srip96868 chr5 20644380 20644380 - L1-Ta germline . no 676 .
srip97794 chr5 33633345 33633345 - L1-Ta germline . no 676 ADAMTS12
srip98846 chr5 51488295 51488295 - L1-Ta germline . no 676 .
srip101534 chr5 105483500 105483500 - L1-Ta germline . no 676 .
srip101728 chr5 108601132 108601132 + L1-Ta germline . no 676 .
srip102593 chr5 110474800 110474800 + L1-Ta germline . yes 676 .
srip103413 chr5 130257380 130257380 + L1-Ta germline validated no 676 .
srip103450 chr5 132924977 132924977 + L1-Ta germline . yes 676 FSTL4
srip103946 chr5 138420464 138420464 + L1-Ta germline . yes 676 SIL1
srip104271 chr5 144473640 144473640 + L1-Ta germline . no 676 .
srip104368 chr5 147337963 147337963 - L1-Ta germline . no 676 .
srip104583 chr5 151462442 151462442 + L1-Ta germline . no 676 .
srip104933 chr5 155488954 155488954 - L1-Ta germline . yes 676 .
srip105149 chr5 155619862 155619862 + L1-Ta germline . no 676 .
srip105316 chr5 157867289 157867289 - L1-Ta germline . no 676 .
srip105887 chr5 165848548 165848548 + L1-Ta germline . yes 676 .
srip106071 chr5 172829796 172829796 - L1-Ta germline . no 676 .
srip106637 chr6 2418002 2418002 - L1-Ta germline . no 676 .
srip107701 chr6 18910854 18910854 - L1-Ta germline . no 676 .
srip108222 chr6 39645329 39645329 - L1-Ta germline . yes 676 KIF6
srip108692 chr6 46310294 46310294 + L1-Ta germline . no 676 .
srip108789 chr6 50611605 50611605 - L1-Ta germline . no 676 .
srip109859 chr6 66787597 66787597 - L1-Ta germline . no 676 .
srip109895 chr6 67313668 67313668 + L1-Ta germline . yes 676 .
srip110155 chr6 70726265 70726265 + L1-Ta germline . yes 676 COL19A1
srip110382 chr6 73995229 73995229 - L1-Ta germline . no 676 C6orf147
srip110430 chr6 74865444 74865444 - L1-Ta germline . no 676 .
srip111373 chr6 84049691 84049691 + L1-Ta germline . yes 676 ME1
srip112028 chr6 91669505 91669505 - L1-Ta germline . no 676 .
srip112942 chr6 113030984 113030984 + L1-Ta germline . no 676 LOC100287612
srip113109 chr6 115899917 115899917 - L1-Ta germline . no 676 .
srip113598 chr6 136712687 136712687 + L1-Ta germline . yes 676 MAP7
srip114343 chr6 148163569 148163569 + L1-Ta germline . no 676 .
srip114841 chr6 153029982 153029982 - L1-Ta germline . no 676 MYCT1
srip115443 chr6 162181256 162181256 + L1-Ta germline . no 676 PARK2
srip115763 chr6 162404960 162404960 + L1-Ta germline . no 676 PARK2
srip116239 chr7 11561087 11561087 - L1-Ta germline . no 676 THSD7A
srip116551 chr7 25081462 25081462 - L1-Ta germline . no 676 .
srip116673 chr7 28783416 28783416 - L1-Ta germline . no 676 CREB5
srip116740 chr7 30484894 30484894 + L1-Ta germline . no 676 NOD1
srip117121 chr7 45733735 45733735 + L1-Ta germline . no 676 ADCY1
srip117152 chr7 46350337 46350337 - L1-Ta germline . no 676 .
srip118584 chr7 69668336 69668336 + L1-Ta germline . yes 676 AUTS2
srip118948 chr7 75335791 75335791 - L1-Ta germline . no 676 HIP1
srip119665 chr7 84901721 84901721 - L1-Ta germline . no 676 .
srip121456 chr7 107829247 107829247 + L1-Ta germline . no 676 NRCAM
srip122092 chr7 109548699 109548699 + L1-Ta germline . no 676 .
srip122340 chr7 111609264 111609264 + L1-Ta germline . yes 676 DOCK4
srip122368 chr7 112789581 112789581 - L1-Ta germline . no 676 .
srip122505 chr7 113139394 113139394 + L1-Ta germline . yes 676 .
srip123027 chr7 129507566 129507566 + L1-Ta germline . no 676 UBE2H
srip123083 chr7 130386823 130386823 - L1-Ta germline . no 676 .
srip123474 chr7 145063368 145063368 + L1-Ta germline . yes 676 .
srip124360 chr8 5829277 5829277 - L1-Ta germline . no 676 .
srip124805 chr8 9597567 9597567 + L1-Ta germline . yes 676 TNKS
srip125025 chr8 18768149 18768149 + L1-Ta germline . yes 676 PSD3
srip126991 chr8 71583563 71583563 - L1-Ta germline . no 676 XKR9
srip128525 chr8 97911008 97911008 + L1-Ta germline . yes 676 PGCP
srip128679 chr8 100233000 100233000 - L1-Ta germline . no 676 VPS13B
srip128943 chr8 114072203 114072203 - L1-Ta germline . no 676 CSMD3
srip128971 chr8 114687257 114687257 + L1-Ta germline . no 676 .
srip130426 chr8 137450317 137450317 - L1-Ta germline . yes 676 .
srip131107 chr9 6290488 6290488 + L1-Ta germline . no 676 .
srip131644 chr9 10137698 10137698 + L1-Ta germline . yes 676 PTPRD
srip131915 chr9 28111894 28111894 - L1-Ta germline . yes 676 LINGO2
srip133221 chr9 32463884 32463884 - L1-Ta germline . no 676 DDX58
srip134133 chr9 80014129 80014129 + L1-Ta germline . no 676 VPS13A
srip134306 chr9 86065262 86065262 - L1-Ta germline . no 676 FRMD3
srip134389 chr9 92917935 92917935 + L1-Ta germline . yes 676 .
srip134599 chr9 98465870 98465870 + L1-Ta germline . yes 676 .
srip134757 chr9 102615582 102615582 - L1-Ta germline . no 676 NR4A3
srip134811 chr9 103749297 103749297 + L1-Ta germline . no 676 .
srip135636 chr9 113185472 113185472 + L1-Ta germline . no 676 SVEP1
srip135672 chr9 115560387 115560387 - L1-Ta germline . no 676 SNX30
srip136355 chrX 11731399 11731399 + L1-Ta germline . yes 676 .
srip136973 chrX 45449426 45449426 + L1-Ta germline . no 676 .
srip137555 chrX 55585146 55585146 - L1-Ta germline . no 676 .
srip138008 chrX 63233094 63233094 - L1-Ta germline . no 676 .
srip138293 chrX 64430988 64430988 + L1-Ta germline . no 676 .
srip138760 chrX 75543182 75543182 - L1-Ta germline . no 676 .
srip139045 chrX 75949601 75949601 + L1-Ta germline . no 676 .
srip139119 chrX 77696853 77696853 - L1-Ta germline . no 676 .
srip139170 chrX 81102668 81102668 + L1-Ta germline . yes 676 .
srip139297 chrX 84028703 84028703 - L1-Ta germline . no 676 .
srip139313 chrX 84715331 84715331 - L1-Ta germline . no 676 .
srip139365 chrX 85701285 85701285 - L1-Ta germline . no 676 DACH2
srip139532 chrX 94857127 94857127 + L1-Ta germline . yes 676 .
srip139829 chrX 101113643 101113643 + L1-Ta germline . yes 676 .
srip140172 chrX 105718545 105718545 + L1-Ta germline . yes 676 .
srip140635 chrX 118569413 118569413 - L1-Ta germline . no 676 SLC25A43
srip140793 chrX 119892835 119892835 - L1-Ta germline . no 676 .
srip140858 chrX 120397638 120397638 - L1-Ta germline . no 676 .
srip141450 chrX 130140534 130140534 + L1-Ta germline . no 676 .
srip141632 chrX 137146500 137146500 + L1-Ta germline . no 676 .
srip142144 chrX 154745667 154745667 - L1-Ta germline . no 676 TMLHE