euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

267 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip919 chr1 56834937 56834937 + L1-Ta germline . yes 674 .
srip1232 chr1 67544154 67544154 - L1-Ta germline . no 674 .
srip1651 chr1 74984526 74984526 - L1-Ta germline . no 674 FPGT-TNNI3K;TNNI3K
srip1681 chr1 75192713 75192713 - L1-Ta germline . no 674 CRYZ
srip2158 chr1 86398798 86398798 + L1-Ta germline . no 674 COL24A1
srip2194 chr1 86741680 86741680 + L1-Ta germline . yes 674 .
srip2245 chr1 87144762 87144762 - L1-Ta germline . no 674 .
srip2597 chr1 99678977 99678977 - L1-Ta germline . no 674 .
srip2651 chr1 99854086 99854086 - L1-Ta germline . no 674 .
srip3979 chr1 121478354 121478354 + L1-Ta germline . yes 674 .
srip4099 chr1 149308424 149308424 + L1-Ta germline . no 674 LOC645262
srip4296 chr1 158238664 158238664 + L1-Ta germline . yes 674 .
srip4532 chr1 162015897 162015897 - L1-Ta germline . no 674 .
srip4573 chr1 163231881 163231881 - L1-Ta germline . no 674 LOC100505773
srip4805 chr1 165940104 165940104 - L1-Ta germline . yes 674 .
srip4840 chr1 166212290 166212290 - L1-Ta germline . yes 674 .
srip5291 chr1 179575336 179575336 - L1-Ta germline . no 674 TDRD5
srip5520 chr1 180668321 180668321 - L1-Ta germline . no 674 XPR1
srip5831 chr1 192072266 192072266 - L1-Ta germline . no 674 .
srip5876 chr1 192262235 192262235 - L1-Ta germline . no 674 .
srip6140 chr1 193836827 193836827 + L1-Ta germline . yes 674 .
srip6509 chr1 218246475 218246475 + L1-Ta germline . yes 674 .
srip7050 chr1 228058514 228058514 - L1-Ta germline . yes 674 .
srip7650 chr10 6411577 6411577 - L1-Ta germline . no 674 .
srip8845 chr10 42959739 42959739 - L1-Ta germline . no 674 CCNYL2
srip8978 chr10 58863547 58863547 - L1-Ta germline . no 674 .
srip10055 chr10 87121396 87121396 + L1-Ta germline . no 674 .
srip10791 chr10 107137008 107137008 - L1-Ta germline . no 674 .
srip11296 chr10 110846814 110846814 + L1-Ta germline . yes 674 .
srip12708 chr11 24355519 24355519 + L1-Ta germline . yes 674 .
srip15530 chr11 59815986 59815986 - L1-Ta germline . no 674 .
srip16466 chr11 82952554 82952554 + L1-Ta germline . no 674 ANKRD42
srip16532 chr11 83652364 83652364 - L1-Ta germline . no 674 DLG2
srip16757 chr11 85211733 85211733 + L1-Ta germline . no 674 DLG2
srip17275 chr11 95175423 95175423 + L1-Ta germline . no 674 .
srip17402 chr11 99478828 99478828 + L1-Ta germline . yes 674 CNTN5
srip20306 chr12 14335361 14335361 + L1-Ta germline . yes 674 .
srip22468 chr12 44501995 44501995 - L1-Ta germline . yes 674 TMEM117
srip23417 chr12 70167057 70167057 - L1-Ta germline . no 674 RAB3IP
srip24214 chr12 84955173 84955173 - L1-Ta germline . no 674 .
srip25300 chr12 98672913 98672913 + L1-Ta germline . yes 674 .
srip26133 chr12 126783235 126783235 - L1-Ta germline . no 674 .
srip27607 chr13 33441812 33441812 - L1-Ta germline . no 674 .
srip28374 chr13 57793451 57793451 - L1-Ta germline . no 674 .
srip28483 chr13 59088395 59088395 + L1-Ta germline . no 674 .
srip29439 chr13 61734484 61734484 + L1-Ta germline . no 674 .
srip30225 chr13 72691352 72691352 + L1-Ta germline . no 674 .
srip32235 chr13 88851194 88851194 - L1-Ta germline . no 674 .
srip32463 chr13 92855881 92855881 + L1-Ta germline . yes 674 GPC5
srip33696 chr13 104704163 104704163 + L1-Ta germline . yes 674 .
srip34337 chr14 20554442 20554442 - L1-Ta germline . no 674 .
srip34403 chr14 24582584 24582584 + L1-Ta germline . yes 674 .
srip34599 chr14 27942058 27942058 + L1-Ta germline validated no 674 LOC728755
srip36364 chr14 40098407 40098407 - L1-Ta germline . no 674 .
srip36410 chr14 41197899 41197899 - L1-Ta germline . no 674 .
srip37029 chr14 48662336 48662336 + L1-Ta germline . no 674 .
srip38014 chr14 71020049 71020049 + L1-Ta germline . no 674 .
srip38131 chr14 71197779 71197779 + L1-Ta germline validated no 674 MAP3K9
srip38903 chr14 95605326 95605326 + L1-Ta germline . no 674 DICER1
srip38981 chr15 20022208 20022208 - L1-Ta germline . no 674 .
srip39011 chr15 20116657 20116657 + L1-Ta germline . no 674 .
srip40790 chr15 51875289 51875289 - L1-Ta germline . no 674 DMXL2
srip41316 chr15 58012013 58012013 - L1-Ta germline . no 674 .
srip41808 chr15 71027483 71027483 + L1-Ta germline . yes 674 UACA
srip43858 chr16 7925421 7925421 + L1-Ta germline . no 674 .
srip44175 chr16 18832538 18832538 - L1-Ta germline . no 674 SMG1
srip44478 chr16 25815939 25815939 + L1-Ta germline . no 674 HS3ST4
srip45798 chr16 60913935 60913935 + L1-Ta germline . no 674 .
srip45838 chr16 61079187 61079187 + L1-Ta germline . no 674 .
srip45947 chr16 65729907 65729907 + L1-Ta germline . yes 674 .
srip47011 chr17 22253253 22253253 - L1-Ta germline . no 674 .
srip47241 chr17 28398312 28398312 + L1-Ta germline . no 674 EFCAB5
srip47431 chr17 29659591 29659591 - L1-Ta germline . no 674 NF1
srip47498 chr17 32192799 32192799 + L1-Ta germline . yes 674 ACCN1
srip48722 chr18 5332408 5332408 - L1-Ta germline . no 674 .
srip48911 chr18 14890022 14890022 + L1-Ta germline validated no 674 FGF7P1
srip49052 chr18 23067399 23067399 + L1-Ta germline . no 674 .
srip49531 chr18 30185593 30185593 - L1-Ta germline . no 674 .
srip49738 chr18 34567457 34567457 + L1-Ta germline . yes 674 KIAA1328
srip50873 chr18 58172211 58172211 - L1-Ta germline . no 674 .
srip51138 chr18 61030433 61030433 - L1-Ta germline . no 674 KDSR
srip51223 chr18 63446487 63446487 - L1-Ta germline . no 674 CDH7
srip51295 chr18 68413712 68413712 - L1-Ta germline . no 674 .
srip51368 chr18 69024727 69024727 + L1-Ta germline . yes 674 .
srip52507 chr19 55091547 55091547 - L1-Ta germline . no 674 LILRA2
srip52847 chr2 11930045 11930045 - L1-Ta germline . no 674 LPIN1
srip53603 chr2 23191016 23191016 - L1-Ta germline . no 674 .
srip54382 chr2 41777137 41777137 - L1-Ta germline . no 674 .
srip54573 chr2 42051402 42051402 + L1-Ta germline . no 674 .
srip55643 chr2 73354355 73354355 - L1-Ta germline . no 674 .
srip55960 chr2 81834768 81834768 - L1-Ta germline . no 674 .
srip56311 chr2 83068216 83068216 + L1-Ta germline . yes 674 .
srip57002 chr2 108631988 108631988 - L1-Ta germline . no 674 .
srip57341 chr2 116246475 116246475 + L1-Ta germline . no 674 DPP10
srip57407 chr2 118667183 118667183 - L1-Ta germline . no 674 .
srip57425 chr2 118696055 118696055 + L1-Ta germline . no 674 CCDC93
srip57618 chr2 126510571 126510571 + L1-Ta germline . yes 674 .
srip57971 chr2 139785112 139785112 - L1-Ta germline . no 674 .
srip58365 chr2 142788891 142788891 - L1-Ta germline . no 674 LRP1B
srip58557 chr2 144010781 144010781 + L1-Ta germline . no 674 ARHGAP15
srip58652 chr2 144624534 144624534 + L1-Ta germline . yes 674 .
srip59469 chr2 153864262 153864262 - L1-Ta germline . no 674 .
srip60171 chr2 178843807 178843807 + L1-Ta germline . yes 674 PDE11A
srip60877 chr2 194077137 194077137 - L1-Ta germline . no 674 .
srip61329 chr2 205631655 205631655 - L1-Ta germline . no 674 PARD3B
srip61761 chr2 214647628 214647628 - L1-Ta germline . no 674 SPAG16
srip61829 chr2 218176494 218176494 + L1-Ta germline . yes 674 DIRC3
srip62602 chr2 235519794 235519794 + L1-Ta germline . no 674 .
srip63012 chr20 7096788 7096788 - L1-Ta germline . no 674 .
srip63300 chr20 12781652 12781652 - L1-Ta germline . no 674 .
srip63985 chr20 23412776 23412776 + L1-Ta germline . yes 674 .
srip65161 chr20 51779972 51779972 - L1-Ta germline . yes 674 TSHZ2
srip66530 chr21 24125137 24125137 + L1-Ta germline . yes 674 .
srip67482 chr22 22486374 22486374 - L1-Ta germline . no 674 IGL@
srip68243 chr22 29065287 29065287 + L1-Ta germline . yes 674 TTC28
srip68787 chr22 44324601 44324601 - L1-Ta germline . no 674 PNPLA3
srip69691 chr3 656444 656444 - L1-Ta germline validated no 674 .
srip69757 chr3 2050178 2050178 + L1-Ta germline . yes 674 .
srip69875 chr3 4080917 4080917 - L1-Ta germline . yes 674 .
srip70547 chr3 21234919 21234919 + L1-Ta germline . no 674 .
srip70607 chr3 21800873 21800873 + L1-Ta germline validated no 674 .
srip70853 chr3 25740941 25740941 - L1-Ta germline . no 674 .
srip70912 chr3 26439488 26439488 - L1-Ta germline . no 674 .
srip71369 chr3 33554072 33554072 + L1-Ta germline . no 674 CLASP2
srip71996 chr3 41821477 41821477 + L1-Ta germline . yes 674 ULK4
srip72126 chr3 46824583 46824583 - L1-Ta germline . no 674 .
srip73356 chr3 59852889 59852889 + L1-Ta germline . no 674 FHIT
srip73963 chr3 77812776 77812776 - L1-Ta germline . no 674 .
srip74612 chr3 81770349 81770349 + L1-Ta germline . yes 674 GBE1
srip76395 chr3 103275235 103275235 - L1-Ta germline . no 674 .
srip76496 chr3 105473860 105473860 - L1-Ta germline . no 674 CBLB
srip76585 chr3 108924737 108924737 + L1-Ta germline . yes 674 .
srip76782 chr3 116084880 116084880 + L1-Ta germline . no 674 LSAMP-AS1;LSAMP
srip77112 chr3 123590712 123590712 + L1-Ta germline validated no 674 MYLK
srip77384 chr3 129972765 129972765 + L1-Ta germline . yes 674 COL6A4P2
srip77583 chr3 132664831 132664831 - L1-Ta germline . no 674 .
srip77826 chr3 137073450 137073450 + L1-Ta germline . no 674 .
srip78874 chr3 152701320 152701320 + L1-Ta germline . no 674 .
srip78935 chr3 154632590 154632590 + L1-Ta germline . yes 674 .
srip79233 chr3 158813156 158813156 - L1-Ta germline . yes 674 IQCJ;IQCJ-SCHIP1
srip80926 chr3 182952475 182952475 - L1-Ta germline . no 674 MCF2L2
srip81611 chr3 187835306 187835306 - L1-Ta germline . no 674 .
srip82635 chr4 15849204 15849204 + L1-Ta germline . no 674 CD38
srip83305 chr4 19170950 19170950 + L1-Ta germline . no 674 .
srip83558 chr4 23622456 23622456 + L1-Ta germline . yes 674 .
srip83615 chr4 26929329 26929329 + L1-Ta germline . no 674 STIM2
srip83825 chr4 29321850 29321850 + L1-Ta germline . no 674 .
srip84568 chr4 46799112 46799112 + L1-Ta germline . yes 674 COX7B2
srip84616 chr4 46883027 46883027 + L1-Ta germline . no 674 .
srip84673 chr4 47007779 47007779 - L1-Ta germline . no 674 .
srip84950 chr4 48416463 48416463 - L1-Ta germline . no 674 SLAIN2
srip85016 chr4 48738022 48738022 + L1-Ta germline . no 674 FRYL
srip85155 chr4 54090931 54090931 + L1-Ta germline . no 674 SCFD2
srip85463 chr4 58087331 58087331 - L1-Ta germline . no 674 .
srip85624 chr4 58888335 58888335 + L1-Ta germline . no 674 .
srip85872 chr4 59442445 59442445 - L1-Ta germline . no 674 .
srip86329 chr4 66809073 66809073 - L1-Ta germline . no 674 .
srip87082 chr4 71200089 71200089 + L1-Ta germline . no 674 .
srip87180 chr4 79032904 79032904 + L1-Ta germline . yes 674 FRAS1
srip87435 chr4 80864880 80864880 + L1-Ta germline . yes 674 ANTXR2
srip88356 chr4 99513572 99513572 - L1-Ta germline . no 674 TSPAN5
srip90323 chr4 115132696 115132696 + L1-Ta germline . no 674 .
srip90843 chr4 120869874 120869874 - L1-Ta germline . no 674 .
srip92240 chr4 134596424 134596424 + L1-Ta germline . no 674 .
srip92319 chr4 136006539 136006539 + L1-Ta germline . no 674 .
srip93176 chr4 147543284 147543284 + L1-Ta germline . no 674 .
srip93208 chr4 147605809 147605809 + L1-Ta germline . no 674 .
srip93964 chr4 163521140 163521140 + L1-Ta germline . no 674 .
srip94154 chr4 167369021 167369021 - L1-Ta germline . no 674 .
srip94470 chr4 170281916 170281916 - L1-Ta germline . no 674 .
srip94530 chr4 170436610 170436610 - L1-Ta germline . no 674 NEK1
srip94650 chr4 175685422 175685422 + L1-Ta germline . no 674 GLRA3
srip95119 chr4 182695155 182695155 - L1-Ta germline . no 674 .
srip95739 chr5 7603653 7603653 - L1-Ta germline . no 674 ADCY2
srip96411 chr5 12197468 12197468 - L1-Ta germline . yes 674 .
srip96867 chr5 20644380 20644380 - L1-Ta germline . no 674 .
srip98069 chr5 33797556 33797556 - L1-Ta germline . no 674 ADAMTS12
srip98844 chr5 51488295 51488295 - L1-Ta germline . no 674 .
srip100146 chr5 88350561 88350561 - L1-Ta germline . no 674 .
srip101455 chr5 99981611 99981611 + L1-Ta germline . yes 674 .
srip101532 chr5 105483500 105483500 - L1-Ta germline . no 674 .
srip101648 chr5 105935364 105935364 + L1-Ta germline validated no 674 .
srip102823 chr5 118941211 118941211 + L1-Ta germline . no 674 .
srip102866 chr5 121006042 121006042 - L1-Ta germline . no 674 .
srip103411 chr5 130257380 130257380 + L1-Ta germline validated no 674 .
srip103944 chr5 138420464 138420464 + L1-Ta germline . yes 674 SIL1
srip104269 chr5 144473640 144473640 + L1-Ta germline . no 674 .
srip104366 chr5 147337963 147337963 - L1-Ta germline . no 674 .
srip104931 chr5 155488954 155488954 - L1-Ta germline . yes 674 .
srip105147 chr5 155619862 155619862 + L1-Ta germline . no 674 .
srip105315 chr5 157867289 157867289 - L1-Ta germline . no 674 .
srip105552 chr5 159351193 159351193 - L1-Ta germline . no 674 ADRA1B
srip105885 chr5 165848548 165848548 + L1-Ta germline . yes 674 .
srip106069 chr5 172829796 172829796 - L1-Ta germline . no 674 .
srip106110 chr5 177205284 177205284 + L1-Ta germline . no 674 FAM153A
srip106635 chr6 2418002 2418002 - L1-Ta germline . no 674 .
srip107699 chr6 18910854 18910854 - L1-Ta germline . no 674 .
srip110153 chr6 70726265 70726265 + L1-Ta germline . yes 674 COL19A1
srip110380 chr6 73995229 73995229 - L1-Ta germline . no 674 C6orf147
srip111371 chr6 84049691 84049691 + L1-Ta germline . yes 674 ME1
srip112026 chr6 91669505 91669505 - L1-Ta germline . no 674 .
srip112940 chr6 113030984 113030984 + L1-Ta germline . no 674 LOC100287612
srip113108 chr6 115899917 115899917 - L1-Ta germline . no 674 .
srip113144 chr6 117429369 117429369 + L1-Ta germline . no 674 .
srip113413 chr6 125643206 125643206 + L1-Ta germline . yes 674 .
srip113596 chr6 136712687 136712687 + L1-Ta germline . yes 674 MAP7
srip114840 chr6 153029982 153029982 - L1-Ta germline . no 674 MYCT1
srip115441 chr6 162181256 162181256 + L1-Ta germline . no 674 PARK2
srip115761 chr6 162404960 162404960 + L1-Ta germline . no 674 PARK2
srip116549 chr7 25081462 25081462 - L1-Ta germline . no 674 .
srip116671 chr7 28783416 28783416 - L1-Ta germline . no 674 CREB5
srip116738 chr7 30484894 30484894 + L1-Ta germline . no 674 NOD1
srip117119 chr7 45733735 45733735 + L1-Ta germline . no 674 ADCY1
srip118582 chr7 69668336 69668336 + L1-Ta germline . yes 674 AUTS2
srip118639 chr7 69828469 69828469 + L1-Ta germline . no 674 AUTS2
srip120771 chr7 93146616 93146616 - L1-Ta germline . no 674 CALCR
srip121454 chr7 107829247 107829247 + L1-Ta germline . no 674 NRCAM
srip122090 chr7 109548699 109548699 + L1-Ta germline . no 674 .
srip122338 chr7 111609264 111609264 + L1-Ta germline . yes 674 DOCK4
srip123025 chr7 129507566 129507566 + L1-Ta germline . no 674 UBE2H
srip123082 chr7 130386823 130386823 - L1-Ta germline . no 674 .
srip123216 chr7 141620449 141620449 - L1-Ta germline . no 674 .
srip123472 chr7 145063368 145063368 + L1-Ta germline . yes 674 .
srip124358 chr8 5829277 5829277 - L1-Ta germline . no 674 .
srip124803 chr8 9597567 9597567 + L1-Ta germline . yes 674 TNKS
srip124960 chr8 18455922 18455922 + L1-Ta germline . yes 674 PSD3
srip125023 chr8 18768149 18768149 + L1-Ta germline . yes 674 PSD3
srip125811 chr8 41361861 41361861 + L1-Ta germline . no 674 GOLGA7
srip126393 chr8 58347939 58347939 + L1-Ta germline . no 674 .
srip126989 chr8 71583563 71583563 - L1-Ta germline . no 674 XKR9
srip128523 chr8 97911008 97911008 + L1-Ta germline . yes 674 PGCP
srip128677 chr8 100233000 100233000 - L1-Ta germline . no 674 VPS13B
srip128941 chr8 114072203 114072203 - L1-Ta germline . no 674 CSMD3
srip130519 chr9 1337904 1337904 - L1-Ta germline . no 674 .
srip131642 chr9 10137698 10137698 + L1-Ta germline . yes 674 PTPRD
srip131913 chr9 28111894 28111894 - L1-Ta germline . yes 674 LINGO2
srip133219 chr9 32463884 32463884 - L1-Ta germline . no 674 DDX58
srip134131 chr9 80014129 80014129 + L1-Ta germline . no 674 VPS13A
srip134304 chr9 86065262 86065262 - L1-Ta germline . no 674 FRMD3
srip134387 chr9 92917935 92917935 + L1-Ta germline . yes 674 .
srip134597 chr9 98465870 98465870 + L1-Ta germline . yes 674 .
srip134755 chr9 102615582 102615582 - L1-Ta germline . no 674 NR4A3
srip135114 chr9 105162482 105162482 - L1-Ta germline . no 674 .
srip135225 chr9 106501597 106501597 - L1-Ta germline . no 674 .
srip135670 chr9 115560387 115560387 - L1-Ta germline . no 674 SNX30
srip136518 chrX 14152010 14152010 - L1-Ta germline validated no 674 .
srip136900 chrX 34837319 34837319 - L1-Ta germline . no 674 .
srip136971 chrX 45449426 45449426 + L1-Ta germline . no 674 .
srip137553 chrX 55585146 55585146 - L1-Ta germline . no 674 .
srip137652 chrX 58053523 58053523 + L1-Ta germline . no 674 .
srip138007 chrX 63233094 63233094 - L1-Ta germline . no 674 .
srip138378 chrX 67263241 67263241 + L1-Ta germline . no 674 OPHN1
srip138493 chrX 72606851 72606851 + L1-Ta germline . no 674 .
srip138758 chrX 75543182 75543182 - L1-Ta germline . no 674 .
srip139043 chrX 75949601 75949601 + L1-Ta germline . no 674 .
srip139117 chrX 77696853 77696853 - L1-Ta germline . no 674 .
srip139295 chrX 84028703 84028703 - L1-Ta germline . no 674 .
srip139343 chrX 85609830 85609830 + L1-Ta germline . yes 674 DACH2
srip139770 chrX 98264296 98264296 - L1-Ta germline validated no 674 .
srip140170 chrX 105718545 105718545 + L1-Ta germline . yes 674 .
srip140254 chrX 111229525 111229525 - L1-Ta germline . no 674 TRPC5
srip140633 chrX 118569413 118569413 - L1-Ta germline . no 674 SLC25A43
srip140856 chrX 120397638 120397638 - L1-Ta germline . no 674 .
srip141237 chrX 129525220 129525220 - L1-Ta germline . no 674 .
srip141630 chrX 137146500 137146500 + L1-Ta germline . no 674 .
srip142059 chrX 146741330 146741330 + L1-Ta germline . no 674 .
srip142142 chrX 154745667 154745667 - L1-Ta germline . no 674 TMLHE