euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

225 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip344 chr1 41201714 41201714 - L1-Ta germline . no 672 NFYC
srip1190 chr1 65909392 65909392 - L1-Ta germline . no 672 LEPR
srip1230 chr1 67544154 67544154 - L1-Ta germline . no 672 .
srip1649 chr1 74984526 74984526 - L1-Ta germline . no 672 FPGT-TNNI3K;TNNI3K
srip2156 chr1 86398798 86398798 + L1-Ta germline . no 672 COL24A1
srip2193 chr1 86741680 86741680 + L1-Ta germline . yes 672 .
srip2243 chr1 87144762 87144762 - L1-Ta germline . no 672 .
srip2595 chr1 99678977 99678977 - L1-Ta germline . no 672 .
srip2649 chr1 99854086 99854086 - L1-Ta germline . no 672 .
srip3977 chr1 121478354 121478354 + L1-Ta germline . yes 672 .
srip4012 chr1 142962099 142962099 + L1-Ta germline . no 672 .
srip4098 chr1 149308424 149308424 + L1-Ta germline . no 672 LOC645262
srip4243 chr1 157732948 157732948 + L1-Ta germline . no 672 FCRL2
srip4294 chr1 158238664 158238664 + L1-Ta germline . yes 672 .
srip4803 chr1 165940104 165940104 - L1-Ta germline . yes 672 .
srip4838 chr1 166212290 166212290 - L1-Ta germline . yes 672 .
srip6138 chr1 193836827 193836827 + L1-Ta germline . yes 672 .
srip6508 chr1 218246475 218246475 + L1-Ta germline . yes 672 .
srip7048 chr1 228058514 228058514 - L1-Ta germline . yes 672 .
srip8718 chr10 32929792 32929792 - L1-Ta germline . no 672 C10orf68
srip9716 chr10 78351510 78351510 + L1-Ta germline . yes 672 .
srip10790 chr10 107137008 107137008 - L1-Ta germline . no 672 .
srip11294 chr10 110846814 110846814 + L1-Ta germline . yes 672 .
srip12619 chr11 15995864 15995864 - L1-Ta germline . no 672 SOX6
srip12707 chr11 24355519 24355519 + L1-Ta germline . yes 672 .
srip13669 chr11 33670122 33670122 + L1-Ta germline validated no 672 C11orf41
srip14844 chr11 48755930 48755930 + L1-Ta germline . no 672 .
srip17273 chr11 95175423 95175423 + L1-Ta germline . no 672 .
srip17400 chr11 99478828 99478828 + L1-Ta germline . yes 672 CNTN5
srip18406 chr11 122349362 122349362 + L1-Ta germline . no 672 .
srip20304 chr12 14335361 14335361 + L1-Ta germline . yes 672 .
srip22466 chr12 44501995 44501995 - L1-Ta germline . yes 672 TMEM117
srip24058 chr12 79570815 79570815 - L1-Ta germline . no 672 SYT1
srip25298 chr12 98672913 98672913 + L1-Ta germline . yes 672 .
srip25360 chr12 102842494 102842494 + L1-Ta germline . no 672 IGF1
srip25380 chr12 105193991 105193991 - L1-Ta germline . no 672 .
srip27605 chr13 33441812 33441812 - L1-Ta germline . no 672 .
srip28481 chr13 59088395 59088395 + L1-Ta germline . no 672 .
srip32066 chr13 86502081 86502081 + L1-Ta germline . no 672 .
srip32233 chr13 88851194 88851194 - L1-Ta germline . no 672 .
srip34045 chr13 107436355 107436355 - L1-Ta germline . no 672 .
srip36363 chr14 40098407 40098407 - L1-Ta germline . no 672 .
srip37027 chr14 48662336 48662336 + L1-Ta germline . no 672 .
srip38013 chr14 71020049 71020049 + L1-Ta germline . no 672 .
srip38901 chr14 95605326 95605326 + L1-Ta germline . no 672 DICER1
srip40849 chr15 53448042 53448042 - L1-Ta germline . no 672 .
srip41314 chr15 58012013 58012013 - L1-Ta germline . no 672 .
srip43856 chr16 7925421 7925421 + L1-Ta germline . no 672 .
srip44174 chr16 18832538 18832538 - L1-Ta germline . no 672 SMG1
srip45945 chr16 65729907 65729907 + L1-Ta germline . yes 672 .
srip47497 chr17 32192799 32192799 + L1-Ta germline . yes 672 ACCN1
srip48720 chr18 5332408 5332408 - L1-Ta germline . no 672 .
srip49529 chr18 30185593 30185593 - L1-Ta germline . no 672 .
srip49810 chr18 43622108 43622108 + L1-Ta germline . no 672 PSTPIP2
srip51055 chr18 59763726 59763726 - L1-Ta germline . no 672 PIGN
srip51136 chr18 61030433 61030433 - L1-Ta germline . no 672 KDSR
srip51221 chr18 63446487 63446487 - L1-Ta germline . no 672 CDH7
srip51293 chr18 68413712 68413712 - L1-Ta germline . no 672 .
srip51366 chr18 69024727 69024727 + L1-Ta germline . yes 672 .
srip52505 chr19 55091547 55091547 - L1-Ta germline . no 672 LILRA2
srip52845 chr2 11930045 11930045 - L1-Ta germline . no 672 LPIN1
srip53602 chr2 23191016 23191016 - L1-Ta germline . no 672 .
srip54249 chr2 36570251 36570251 - L1-Ta germline . no 672 .
srip54380 chr2 41777137 41777137 - L1-Ta germline . no 672 .
srip54572 chr2 42051402 42051402 + L1-Ta germline . no 672 .
srip55641 chr2 73354355 73354355 - L1-Ta germline . no 672 .
srip55958 chr2 81834768 81834768 - L1-Ta germline . no 672 .
srip56128 chr2 82098027 82098027 + L1-Ta germline . no 672 .
srip56309 chr2 83068216 83068216 + L1-Ta germline . yes 672 .
srip57000 chr2 108631988 108631988 - L1-Ta germline . no 672 .
srip57339 chr2 116246475 116246475 + L1-Ta germline . no 672 DPP10
srip57405 chr2 118667183 118667183 - L1-Ta germline . no 672 .
srip57489 chr2 124392252 124392252 + L1-Ta germline . no 672 .
srip58363 chr2 142788891 142788891 - L1-Ta germline . no 672 LRP1B
srip58650 chr2 144624534 144624534 + L1-Ta germline . yes 672 .
srip59834 chr2 170111155 170111155 + L1-Ta germline . yes 672 LRP2
srip59938 chr2 176346680 176346680 - L1-Ta germline . no 672 .
srip60770 chr2 191478703 191478703 - L1-Ta germline . no 672 .
srip61327 chr2 205631655 205631655 - L1-Ta germline . no 672 PARD3B
srip61759 chr2 214647628 214647628 - L1-Ta germline . no 672 SPAG16
srip63094 chr20 7292205 7292205 + L1-Ta germline . no 672 .
srip63298 chr20 12781652 12781652 - L1-Ta germline . no 672 .
srip63983 chr20 23412776 23412776 + L1-Ta germline . yes 672 .
srip65159 chr20 51779972 51779972 - L1-Ta germline . yes 672 TSHZ2
srip65896 chr21 19517309 19517309 - L1-Ta germline . no 672 .
srip66528 chr21 24125137 24125137 + L1-Ta germline . yes 672 .
srip66570 chr21 26825400 26825400 + L1-Ta germline . no 672 .
srip67481 chr22 22486374 22486374 - L1-Ta germline . no 672 IGL@
srip67741 chr22 22715585 22715585 + L1-Ta germline . no 672 IGL@
srip67898 chr22 28455877 28455877 - L1-Ta germline . no 672 TTC28
srip68241 chr22 29065287 29065287 + L1-Ta germline . yes 672 TTC28
srip69689 chr3 656444 656444 - L1-Ta germline validated no 672 .
srip69755 chr3 2050178 2050178 + L1-Ta germline . yes 672 .
srip69873 chr3 4080917 4080917 - L1-Ta germline . yes 672 .
srip70851 chr3 25740941 25740941 - L1-Ta germline . no 672 .
srip70910 chr3 26439488 26439488 - L1-Ta germline . no 672 .
srip71367 chr3 33554072 33554072 + L1-Ta germline . no 672 CLASP2
srip71994 chr3 41821477 41821477 + L1-Ta germline . yes 672 ULK4
srip72124 chr3 46824583 46824583 - L1-Ta germline . no 672 .
srip73571 chr3 75005137 75005137 + L1-Ta germline . no 672 .
srip74610 chr3 81770349 81770349 + L1-Ta germline . yes 672 GBE1
srip75953 chr3 90389460 90389460 + L1-Ta germline . no 672 .
srip76393 chr3 103275235 103275235 - L1-Ta germline . no 672 .
srip76494 chr3 105473860 105473860 - L1-Ta germline . no 672 CBLB
srip76665 chr3 109836400 109836400 - L1-Ta germline . no 672 .
srip77382 chr3 129972765 129972765 + L1-Ta germline . yes 672 COL6A4P2
srip77434 chr3 130352893 130352893 + L1-Ta germline . yes 672 COL6A6
srip77446 chr3 130641233 130641233 - L1-Ta germline . no 672 ATP2C1
srip79231 chr3 158813156 158813156 - L1-Ta germline . yes 672 IQCJ;IQCJ-SCHIP1
srip79962 chr3 172749131 172749131 - L1-Ta germline . no 672 SPATA16
srip80209 chr3 175677955 175677955 - L1-Ta germline . no 672 .
srip80327 chr3 176091321 176091321 + L1-Ta germline . no 672 .
srip80924 chr3 182952475 182952475 - L1-Ta germline . no 672 MCF2L2
srip81387 chr3 186372123 186372123 + L1-Ta germline . no 672 .
srip81609 chr3 187835306 187835306 - L1-Ta germline . no 672 .
srip82282 chr4 5667990 5667990 - L1-Ta germline . no 672 EVC2
srip83303 chr4 19170950 19170950 + L1-Ta germline . no 672 .
srip83557 chr4 23622456 23622456 + L1-Ta germline . yes 672 .
srip83613 chr4 26929329 26929329 + L1-Ta germline . no 672 STIM2
srip84567 chr4 46799112 46799112 + L1-Ta germline . yes 672 COX7B2
srip84614 chr4 46883027 46883027 + L1-Ta germline . no 672 .
srip84671 chr4 47007779 47007779 - L1-Ta germline . no 672 .
srip84969 chr4 48738021 48738021 + L1-Ta germline . no 672 FRYL
srip85014 chr4 48738022 48738022 + L1-Ta germline . no 672 FRYL
srip85623 chr4 58888335 58888335 + L1-Ta germline . no 672 .
srip85871 chr4 59442445 59442445 - L1-Ta germline . no 672 .
srip87126 chr4 75642671 75642671 - L1-Ta germline . no 672 .
srip87178 chr4 79032904 79032904 + L1-Ta germline . yes 672 FRAS1
srip87433 chr4 80864880 80864880 + L1-Ta germline . yes 672 ANTXR2
srip88068 chr4 88486275 88486275 + L1-Ta germline . yes 672 .
srip88355 chr4 99513572 99513572 - L1-Ta germline . no 672 TSPAN5
srip89286 chr4 107492188 107492188 - L1-Ta germline . no 672 .
srip90322 chr4 115132696 115132696 + L1-Ta germline . no 672 .
srip90841 chr4 120869874 120869874 - L1-Ta germline . no 672 .
srip91265 chr4 130361662 130361662 - L1-Ta germline . no 672 .
srip92239 chr4 134596424 134596424 + L1-Ta germline . no 672 .
srip92317 chr4 136006539 136006539 + L1-Ta germline . no 672 .
srip93174 chr4 147543284 147543284 + L1-Ta germline . no 672 .
srip94468 chr4 170281916 170281916 - L1-Ta germline . no 672 .
srip94528 chr4 170436610 170436610 - L1-Ta germline . no 672 NEK1
srip95738 chr5 7603653 7603653 - L1-Ta germline . no 672 ADCY2
srip96410 chr5 12197468 12197468 - L1-Ta germline . yes 672 .
srip99182 chr5 64795478 64795478 - L1-Ta germline . no 672 .
srip101531 chr5 105483500 105483500 - L1-Ta germline . no 672 .
srip101726 chr5 108601132 108601132 + L1-Ta germline . no 672 .
srip102233 chr5 109480258 109480258 - L1-Ta germline validated no 672 .
srip102590 chr5 110474800 110474800 + L1-Ta germline . yes 672 .
srip103016 chr5 124907258 124907258 + L1-Ta germline . yes 672 .
srip103942 chr5 138420464 138420464 + L1-Ta germline . yes 672 SIL1
srip104364 chr5 147337963 147337963 - L1-Ta germline . no 672 .
srip104929 chr5 155488954 155488954 - L1-Ta germline . yes 672 .
srip105550 chr5 159351193 159351193 - L1-Ta germline . no 672 ADRA1B
srip106067 chr5 172829796 172829796 - L1-Ta germline . no 672 .
srip106633 chr6 2418002 2418002 - L1-Ta germline . no 672 .
srip107697 chr6 18910854 18910854 - L1-Ta germline . no 672 .
srip108219 chr6 39645329 39645329 - L1-Ta germline . yes 672 KIF6
srip108690 chr6 46310294 46310294 + L1-Ta germline . no 672 .
srip108788 chr6 50611605 50611605 - L1-Ta germline . no 672 .
srip108883 chr6 55594843 55594843 - L1-Ta germline . no 672 .
srip109434 chr6 63368195 63368195 + L1-Ta germline . no 672 .
srip109856 chr6 66787597 66787597 - L1-Ta germline . no 672 .
srip110152 chr6 70726265 70726265 + L1-Ta germline . yes 672 COL19A1
srip110378 chr6 73995229 73995229 - L1-Ta germline . no 672 C6orf147
srip110898 chr6 77980636 77980636 - L1-Ta germline . no 672 .
srip112024 chr6 91669505 91669505 - L1-Ta germline . no 672 .
srip112938 chr6 113030984 113030984 + L1-Ta germline . no 672 LOC100287612
srip113049 chr6 115350723 115350723 + L1-Ta germline . no 672 .
srip113106 chr6 115899917 115899917 - L1-Ta germline . no 672 .
srip113142 chr6 117429369 117429369 + L1-Ta germline . no 672 .
srip113523 chr6 133341827 133341827 - L1-Ta germline . no 672 .
srip113594 chr6 136712687 136712687 + L1-Ta germline . yes 672 MAP7
srip113848 chr6 142450109 142450109 - L1-Ta germline . no 672 .
srip114341 chr6 148163569 148163569 + L1-Ta germline . no 672 .
srip115759 chr6 162404960 162404960 + L1-Ta germline . no 672 PARK2
srip116192 chr7 9694170 9694170 + L1-Ta germline . no 672 .
srip116237 chr7 11561087 11561087 - L1-Ta germline . no 672 THSD7A
srip116547 chr7 25081462 25081462 - L1-Ta germline . no 672 .
srip116670 chr7 28783416 28783416 - L1-Ta germline . no 672 CREB5
srip116736 chr7 30484894 30484894 + L1-Ta germline . no 672 NOD1
srip117117 chr7 45733735 45733735 + L1-Ta germline . no 672 ADCY1
srip118637 chr7 69828469 69828469 + L1-Ta germline . no 672 AUTS2
srip118946 chr7 75335791 75335791 - L1-Ta germline . no 672 HIP1
srip119664 chr7 84901721 84901721 - L1-Ta germline . no 672 .
srip121452 chr7 107829247 107829247 + L1-Ta germline . no 672 NRCAM
srip122088 chr7 109548699 109548699 + L1-Ta germline . no 672 .
srip122336 chr7 111609264 111609264 + L1-Ta germline . yes 672 DOCK4
srip122365 chr7 112789581 112789581 - L1-Ta germline . no 672 .
srip122502 chr7 113139394 113139394 + L1-Ta germline . yes 672 .
srip122963 chr7 127930833 127930833 - L1-Ta germline . no 672 .
srip123023 chr7 129507566 129507566 + L1-Ta germline . no 672 UBE2H
srip123214 chr7 141620449 141620449 - L1-Ta germline . no 672 .
srip123470 chr7 145063368 145063368 + L1-Ta germline . yes 672 .
srip124357 chr8 5829277 5829277 - L1-Ta germline . no 672 .
srip124801 chr8 9597567 9597567 + L1-Ta germline . yes 672 TNKS
srip128675 chr8 100233000 100233000 - L1-Ta germline . no 672 VPS13B
srip128939 chr8 114072203 114072203 - L1-Ta germline . no 672 CSMD3
srip129692 chr8 121746162 121746162 - L1-Ta germline . no 672 SNTB1
srip130424 chr8 137450317 137450317 - L1-Ta germline . yes 672 .
srip131911 chr9 28111894 28111894 - L1-Ta germline . yes 672 LINGO2
srip133217 chr9 32463884 32463884 - L1-Ta germline . no 672 DDX58
srip134129 chr9 80014129 80014129 + L1-Ta germline . no 672 VPS13A
srip134302 chr9 86065262 86065262 - L1-Ta germline . no 672 FRMD3
srip134386 chr9 92917935 92917935 + L1-Ta germline . yes 672 .
srip134595 chr9 98465870 98465870 + L1-Ta germline . yes 672 .
srip134753 chr9 102615582 102615582 - L1-Ta germline . no 672 NR4A3
srip135223 chr9 106501597 106501597 - L1-Ta germline . no 672 .
srip136516 chrX 14152010 14152010 - L1-Ta germline validated no 672 .
srip136899 chrX 34837319 34837319 - L1-Ta germline . no 672 .
srip136969 chrX 45449426 45449426 + L1-Ta germline . no 672 .
srip137062 chrX 49784005 49784005 - L1-Ta germline . no 672 CLCN5
srip138377 chrX 67263241 67263241 + L1-Ta germline . no 672 OPHN1
srip138492 chrX 72606851 72606851 + L1-Ta germline . no 672 .
srip138756 chrX 75543182 75543182 - L1-Ta germline . no 672 .
srip139041 chrX 75949601 75949601 + L1-Ta germline . no 672 .
srip139167 chrX 81102668 81102668 + L1-Ta germline . yes 672 .
srip139293 chrX 84028703 84028703 - L1-Ta germline . no 672 .
srip139529 chrX 94857127 94857127 + L1-Ta germline . yes 672 .
srip140168 chrX 105718545 105718545 + L1-Ta germline . yes 672 .
srip140631 chrX 118569413 118569413 - L1-Ta germline . no 672 SLC25A43
srip140854 chrX 120397638 120397638 - L1-Ta germline . no 672 .
srip141235 chrX 129525220 129525220 - L1-Ta germline . no 672 .
srip141447 chrX 130140534 130140534 + L1-Ta germline . no 672 .
srip141628 chrX 137146500 137146500 + L1-Ta germline . no 672 .
srip141987 chrX 141571641 141571641 + L1-Ta germline . yes 672 .
srip142140 chrX 154745667 154745667 - L1-Ta germline . no 672 TMLHE