euL1db |
The European database of L1-HS retrotransposon insertions in humans |
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SRIP ID | Chromosome | Start | Stop | Strand | Sub group | Lineage | PCR | Reference | SampleID | GeneName |
---|---|---|---|---|---|---|---|---|---|---|
srip343 | chr1 | 41201714 | 41201714 | - | L1-Ta | germline | . | no | 671 | NFYC |
srip540 | chr1 | 42483962 | 42483962 | + | L1-Ta | germline | . | no | 671 | HIVEP3 |
srip1189 | chr1 | 65909392 | 65909392 | - | L1-Ta | germline | . | no | 671 | LEPR |
srip1648 | chr1 | 74984526 | 74984526 | - | L1-Ta | germline | . | no | 671 | FPGT-TNNI3K;TNNI3K |
srip2155 | chr1 | 86398798 | 86398798 | + | L1-Ta | germline | . | no | 671 | COL24A1 |
srip2242 | chr1 | 87144762 | 87144762 | - | L1-Ta | germline | . | no | 671 | . |
srip2594 | chr1 | 99678977 | 99678977 | - | L1-Ta | germline | . | no | 671 | . |
srip2648 | chr1 | 99854086 | 99854086 | - | L1-Ta | germline | . | no | 671 | . |
srip3250 | chr1 | 105386449 | 105386449 | - | L1-Ta | germline | . | no | 671 | . |
srip3976 | chr1 | 121478354 | 121478354 | + | L1-Ta | germline | . | yes | 671 | . |
srip4097 | chr1 | 149308424 | 149308424 | + | L1-Ta | germline | . | no | 671 | LOC645262 |
srip4293 | chr1 | 158238664 | 158238664 | + | L1-Ta | germline | . | yes | 671 | . |
srip4571 | chr1 | 163231881 | 163231881 | - | L1-Ta | germline | . | no | 671 | LOC100505773 |
srip4837 | chr1 | 166212290 | 166212290 | - | L1-Ta | germline | . | yes | 671 | . |
srip6137 | chr1 | 193836827 | 193836827 | + | L1-Ta | germline | . | yes | 671 | . |
srip6970 | chr1 | 223491176 | 223491176 | - | L1-Ta | germline | . | yes | 671 | SUSD4 |
srip7047 | chr1 | 228058514 | 228058514 | - | L1-Ta | germline | . | yes | 671 | . |
srip7612 | chr10 | 5293335 | 5293335 | + | L1-Ta | germline | . | yes | 671 | . |
srip8483 | chr10 | 25707697 | 25707697 | - | L1-Ta | germline | . | no | 671 | GPR158 |
srip8826 | chr10 | 42527965 | 42527965 | + | L1-Ta | germline | . | no | 671 | . |
srip8976 | chr10 | 58863547 | 58863547 | - | L1-Ta | germline | . | no | 671 | . |
srip10789 | chr10 | 107137008 | 107137008 | - | L1-Ta | germline | . | no | 671 | . |
srip11293 | chr10 | 110846814 | 110846814 | + | L1-Ta | germline | . | yes | 671 | . |
srip12618 | chr11 | 15995864 | 15995864 | - | L1-Ta | germline | . | no | 671 | SOX6 |
srip13668 | chr11 | 33670122 | 33670122 | + | L1-Ta | germline | validated | no | 671 | C11orf41 |
srip15868 | chr11 | 67599371 | 67599371 | + | L1-Ta | germline | . | no | 671 | LOC100421859 |
srip17272 | chr11 | 95175423 | 95175423 | + | L1-Ta | germline | . | no | 671 | . |
srip17399 | chr11 | 99478828 | 99478828 | + | L1-Ta | germline | . | yes | 671 | CNTN5 |
srip20303 | chr12 | 14335361 | 14335361 | + | L1-Ta | germline | . | yes | 671 | . |
srip21078 | chr12 | 33325803 | 33325803 | - | L1-Ta | germline | . | no | 671 | . |
srip22465 | chr12 | 44501995 | 44501995 | - | L1-Ta | germline | . | yes | 671 | TMEM117 |
srip23416 | chr12 | 70167057 | 70167057 | - | L1-Ta | germline | . | no | 671 | RAB3IP |
srip24057 | chr12 | 79570815 | 79570815 | - | L1-Ta | germline | . | no | 671 | SYT1 |
srip25297 | chr12 | 98672913 | 98672913 | + | L1-Ta | germline | . | yes | 671 | . |
srip25359 | chr12 | 102842494 | 102842494 | + | L1-Ta | germline | . | no | 671 | IGF1 |
srip25379 | chr12 | 105193991 | 105193991 | - | L1-Ta | germline | . | no | 671 | . |
srip27604 | chr13 | 33441812 | 33441812 | - | L1-Ta | germline | . | no | 671 | . |
srip28480 | chr13 | 59088395 | 59088395 | + | L1-Ta | germline | . | no | 671 | . |
srip28696 | chr13 | 61462318 | 61462318 | - | L1-Ta | germline | . | no | 671 | . |
srip30327 | chr13 | 72968674 | 72968674 | + | L1-Ta | germline | . | no | 671 | . |
srip32065 | chr13 | 86502081 | 86502081 | + | L1-Ta | germline | . | no | 671 | . |
srip32232 | chr13 | 88851194 | 88851194 | - | L1-Ta | germline | . | no | 671 | . |
srip32461 | chr13 | 92855881 | 92855881 | + | L1-Ta | germline | . | yes | 671 | GPC5 |
srip37026 | chr14 | 48662336 | 48662336 | + | L1-Ta | germline | . | no | 671 | . |
srip37103 | chr14 | 52532174 | 52532174 | - | L1-Ta | germline | . | no | 671 | NID2 |
srip38900 | chr14 | 95605326 | 95605326 | + | L1-Ta | germline | . | no | 671 | DICER1 |
srip40788 | chr15 | 51875289 | 51875289 | - | L1-Ta | germline | . | no | 671 | DMXL2 |
srip40848 | chr15 | 53448042 | 53448042 | - | L1-Ta | germline | . | no | 671 | . |
srip41313 | chr15 | 58012013 | 58012013 | - | L1-Ta | germline | . | no | 671 | . |
srip41807 | chr15 | 71027483 | 71027483 | + | L1-Ta | germline | . | yes | 671 | UACA |
srip42652 | chr15 | 88059478 | 88059478 | + | L1-Ta | germline | . | no | 671 | . |
srip43287 | chr15 | 100931158 | 100931158 | - | L1-Ta | germline | . | no | 671 | . |
srip43593 | chr16 | 6793830 | 6793830 | + | L1-Ta | germline | . | no | 671 | RBFOX1 |
srip44173 | chr16 | 18832538 | 18832538 | - | L1-Ta | germline | . | no | 671 | SMG1 |
srip45836 | chr16 | 61079187 | 61079187 | + | L1-Ta | germline | . | no | 671 | . |
srip45944 | chr16 | 65729907 | 65729907 | + | L1-Ta | germline | . | yes | 671 | . |
srip47429 | chr17 | 29659591 | 29659591 | - | L1-Ta | germline | . | no | 671 | NF1 |
srip47496 | chr17 | 32192799 | 32192799 | + | L1-Ta | germline | . | yes | 671 | ACCN1 |
srip48719 | chr18 | 5332408 | 5332408 | - | L1-Ta | germline | . | no | 671 | . |
srip49528 | chr18 | 30185593 | 30185593 | - | L1-Ta | germline | . | no | 671 | . |
srip50872 | chr18 | 58172211 | 58172211 | - | L1-Ta | germline | . | no | 671 | . |
srip51135 | chr18 | 61030433 | 61030433 | - | L1-Ta | germline | . | no | 671 | KDSR |
srip51220 | chr18 | 63446487 | 63446487 | - | L1-Ta | germline | . | no | 671 | CDH7 |
srip51292 | chr18 | 68413712 | 68413712 | - | L1-Ta | germline | . | no | 671 | . |
srip51365 | chr18 | 69024727 | 69024727 | + | L1-Ta | germline | . | yes | 671 | . |
srip52504 | chr19 | 55091547 | 55091547 | - | L1-Ta | germline | . | no | 671 | LILRA2 |
srip52559 | chr2 | 988745 | 988745 | - | L1-Ta | germline | . | no | 671 | SNTG2 |
srip52844 | chr2 | 11930045 | 11930045 | - | L1-Ta | germline | . | no | 671 | LPIN1 |
srip54248 | chr2 | 36570251 | 36570251 | - | L1-Ta | germline | . | no | 671 | . |
srip54379 | chr2 | 41777137 | 41777137 | - | L1-Ta | germline | . | no | 671 | . |
srip54571 | chr2 | 42051402 | 42051402 | + | L1-Ta | germline | . | no | 671 | . |
srip55640 | chr2 | 73354355 | 73354355 | - | L1-Ta | germline | . | no | 671 | . |
srip56308 | chr2 | 83068216 | 83068216 | + | L1-Ta | germline | . | yes | 671 | . |
srip56999 | chr2 | 108631988 | 108631988 | - | L1-Ta | germline | . | no | 671 | . |
srip57338 | chr2 | 116246475 | 116246475 | + | L1-Ta | germline | . | no | 671 | DPP10 |
srip57404 | chr2 | 118667183 | 118667183 | - | L1-Ta | germline | . | no | 671 | . |
srip58362 | chr2 | 142788891 | 142788891 | - | L1-Ta | germline | . | no | 671 | LRP1B |
srip59467 | chr2 | 153864262 | 153864262 | - | L1-Ta | germline | . | no | 671 | . |
srip59937 | chr2 | 176346680 | 176346680 | - | L1-Ta | germline | . | no | 671 | . |
srip60170 | chr2 | 178843807 | 178843807 | + | L1-Ta | germline | . | yes | 671 | PDE11A |
srip60769 | chr2 | 191478703 | 191478703 | - | L1-Ta | germline | . | no | 671 | . |
srip61326 | chr2 | 205631655 | 205631655 | - | L1-Ta | germline | . | no | 671 | PARD3B |
srip61758 | chr2 | 214647628 | 214647628 | - | L1-Ta | germline | . | no | 671 | SPAG16 |
srip61827 | chr2 | 218176494 | 218176494 | + | L1-Ta | germline | . | yes | 671 | DIRC3 |
srip63680 | chr20 | 19400466 | 19400466 | - | L1-Ta | germline | . | no | 671 | SLC24A3 |
srip63982 | chr20 | 23412776 | 23412776 | + | L1-Ta | germline | . | yes | 671 | . |
srip67480 | chr22 | 22486374 | 22486374 | - | L1-Ta | germline | . | no | 671 | IGL@ |
srip67740 | chr22 | 22715585 | 22715585 | + | L1-Ta | germline | . | no | 671 | IGL@ |
srip68240 | chr22 | 29065287 | 29065287 | + | L1-Ta | germline | . | yes | 671 | TTC28 |
srip69688 | chr3 | 656444 | 656444 | - | L1-Ta | germline | validated | no | 671 | . |
srip70850 | chr3 | 25740941 | 25740941 | - | L1-Ta | germline | . | no | 671 | . |
srip70909 | chr3 | 26439488 | 26439488 | - | L1-Ta | germline | . | no | 671 | . |
srip72123 | chr3 | 46824583 | 46824583 | - | L1-Ta | germline | . | no | 671 | . |
srip74609 | chr3 | 81770349 | 81770349 | + | L1-Ta | germline | . | yes | 671 | GBE1 |
srip76392 | chr3 | 103275235 | 103275235 | - | L1-Ta | germline | . | no | 671 | . |
srip76493 | chr3 | 105473860 | 105473860 | - | L1-Ta | germline | . | no | 671 | CBLB |
srip76780 | chr3 | 116084880 | 116084880 | + | L1-Ta | germline | . | no | 671 | LSAMP-AS1;LSAMP |
srip77381 | chr3 | 129972765 | 129972765 | + | L1-Ta | germline | . | yes | 671 | COL6A4P2 |
srip77433 | chr3 | 130352893 | 130352893 | + | L1-Ta | germline | . | yes | 671 | COL6A6 |
srip77581 | chr3 | 132664831 | 132664831 | - | L1-Ta | germline | . | no | 671 | . |
srip79230 | chr3 | 158813156 | 158813156 | - | L1-Ta | germline | . | yes | 671 | IQCJ;IQCJ-SCHIP1 |
srip80208 | chr3 | 175677955 | 175677955 | - | L1-Ta | germline | . | no | 671 | . |
srip80326 | chr3 | 176091321 | 176091321 | + | L1-Ta | germline | . | no | 671 | . |
srip80923 | chr3 | 182952475 | 182952475 | - | L1-Ta | germline | . | no | 671 | MCF2L2 |
srip81608 | chr3 | 187835306 | 187835306 | - | L1-Ta | germline | . | no | 671 | . |
srip82634 | chr4 | 15849204 | 15849204 | + | L1-Ta | germline | . | no | 671 | CD38 |
srip82710 | chr4 | 16950725 | 16950725 | + | L1-Ta | germline | . | yes | 671 | . |
srip83302 | chr4 | 19170950 | 19170950 | + | L1-Ta | germline | . | no | 671 | . |
srip83612 | chr4 | 26929329 | 26929329 | + | L1-Ta | germline | . | no | 671 | STIM2 |
srip84527 | chr4 | 46058194 | 46058194 | + | L1-Ta | germline | . | no | 671 | GABRG1 |
srip84948 | chr4 | 48416463 | 48416463 | - | L1-Ta | germline | . | no | 671 | SLAIN2 |
srip85013 | chr4 | 48738022 | 48738022 | + | L1-Ta | germline | . | no | 671 | FRYL |
srip85051 | chr4 | 49057917 | 49057917 | - | L1-Ta | germline | . | no | 671 | CWH43 |
srip86327 | chr4 | 66809073 | 66809073 | - | L1-Ta | germline | . | no | 671 | . |
srip87125 | chr4 | 75642671 | 75642671 | - | L1-Ta | germline | . | no | 671 | . |
srip87177 | chr4 | 79032904 | 79032904 | + | L1-Ta | germline | . | yes | 671 | FRAS1 |
srip87735 | chr4 | 82931377 | 82931377 | + | L1-Ta | germline | . | yes | 671 | . |
srip88067 | chr4 | 88486275 | 88486275 | + | L1-Ta | germline | . | yes | 671 | . |
srip88354 | chr4 | 99513572 | 99513572 | - | L1-Ta | germline | . | no | 671 | TSPAN5 |
srip90840 | chr4 | 120869874 | 120869874 | - | L1-Ta | germline | . | no | 671 | . |
srip92316 | chr4 | 136006539 | 136006539 | + | L1-Ta | germline | . | no | 671 | . |
srip93173 | chr4 | 147543284 | 147543284 | + | L1-Ta | germline | . | no | 671 | . |
srip94152 | chr4 | 167369021 | 167369021 | - | L1-Ta | germline | . | no | 671 | . |
srip94572 | chr4 | 172217522 | 172217522 | - | L1-Ta | germline | . | no | 671 | . |
srip95117 | chr4 | 182695155 | 182695155 | - | L1-Ta | germline | . | no | 671 | . |
srip96865 | chr5 | 20644380 | 20644380 | - | L1-Ta | germline | . | no | 671 | . |
srip98842 | chr5 | 51488295 | 51488295 | - | L1-Ta | germline | . | no | 671 | . |
srip99534 | chr5 | 68263470 | 68263470 | - | L1-Ta | germline | . | no | 671 | . |
srip101453 | chr5 | 99981611 | 99981611 | + | L1-Ta | germline | . | yes | 671 | . |
srip101530 | chr5 | 105483500 | 105483500 | - | L1-Ta | germline | . | no | 671 | . |
srip102589 | chr5 | 110474800 | 110474800 | + | L1-Ta | germline | . | yes | 671 | . |
srip102865 | chr5 | 121006042 | 121006042 | - | L1-Ta | germline | . | no | 671 | . |
srip103941 | chr5 | 138420464 | 138420464 | + | L1-Ta | germline | . | yes | 671 | SIL1 |
srip104268 | chr5 | 144473640 | 144473640 | + | L1-Ta | germline | . | no | 671 | . |
srip104363 | chr5 | 147337963 | 147337963 | - | L1-Ta | germline | . | no | 671 | . |
srip104886 | chr5 | 155333864 | 155333864 | - | L1-Ta | germline | . | no | 671 | . |
srip105145 | chr5 | 155619862 | 155619862 | + | L1-Ta | germline | . | no | 671 | . |
srip105549 | chr5 | 159351193 | 159351193 | - | L1-Ta | germline | . | no | 671 | ADRA1B |
srip106066 | chr5 | 172829796 | 172829796 | - | L1-Ta | germline | . | no | 671 | . |
srip106632 | chr6 | 2418002 | 2418002 | - | L1-Ta | germline | . | no | 671 | . |
srip108218 | chr6 | 39645329 | 39645329 | - | L1-Ta | germline | . | yes | 671 | KIF6 |
srip108751 | chr6 | 48868435 | 48868435 | - | L1-Ta | germline | . | no | 671 | . |
srip108882 | chr6 | 55594843 | 55594843 | - | L1-Ta | germline | . | no | 671 | . |
srip109433 | chr6 | 63368195 | 63368195 | + | L1-Ta | germline | . | no | 671 | . |
srip110151 | chr6 | 70726265 | 70726265 | + | L1-Ta | germline | . | yes | 671 | COL19A1 |
srip112023 | chr6 | 91669505 | 91669505 | - | L1-Ta | germline | . | no | 671 | . |
srip112937 | chr6 | 113030984 | 113030984 | + | L1-Ta | germline | . | no | 671 | LOC100287612 |
srip113593 | chr6 | 136712687 | 136712687 | + | L1-Ta | germline | . | yes | 671 | MAP7 |
srip113847 | chr6 | 142450109 | 142450109 | - | L1-Ta | germline | . | no | 671 | . |
srip114340 | chr6 | 148163569 | 148163569 | + | L1-Ta | germline | . | no | 671 | . |
srip115439 | chr6 | 162181256 | 162181256 | + | L1-Ta | germline | . | no | 671 | PARK2 |
srip115758 | chr6 | 162404960 | 162404960 | + | L1-Ta | germline | . | no | 671 | PARK2 |
srip116546 | chr7 | 25081462 | 25081462 | - | L1-Ta | germline | . | no | 671 | . |
srip116735 | chr7 | 30484894 | 30484894 | + | L1-Ta | germline | . | no | 671 | NOD1 |
srip118580 | chr7 | 69668336 | 69668336 | + | L1-Ta | germline | . | yes | 671 | AUTS2 |
srip118636 | chr7 | 69828469 | 69828469 | + | L1-Ta | germline | . | no | 671 | AUTS2 |
srip118945 | chr7 | 75335791 | 75335791 | - | L1-Ta | germline | . | no | 671 | HIP1 |
srip121451 | chr7 | 107829247 | 107829247 | + | L1-Ta | germline | . | no | 671 | NRCAM |
srip122087 | chr7 | 109548699 | 109548699 | + | L1-Ta | germline | . | no | 671 | . |
srip122364 | chr7 | 112789581 | 112789581 | - | L1-Ta | germline | . | no | 671 | . |
srip122501 | chr7 | 113139394 | 113139394 | + | L1-Ta | germline | . | yes | 671 | . |
srip122523 | chr7 | 113416171 | 113416171 | - | L1-Ta | germline | . | no | 671 | . |
srip123022 | chr7 | 129507566 | 129507566 | + | L1-Ta | germline | . | no | 671 | UBE2H |
srip123080 | chr7 | 130386823 | 130386823 | - | L1-Ta | germline | . | no | 671 | . |
srip123469 | chr7 | 145063368 | 145063368 | + | L1-Ta | germline | . | yes | 671 | . |
srip124356 | chr8 | 5829277 | 5829277 | - | L1-Ta | germline | . | no | 671 | . |
srip124800 | chr8 | 9597567 | 9597567 | + | L1-Ta | germline | . | yes | 671 | TNKS |
srip125021 | chr8 | 18768149 | 18768149 | + | L1-Ta | germline | . | yes | 671 | PSD3 |
srip128521 | chr8 | 97911008 | 97911008 | + | L1-Ta | germline | . | yes | 671 | PGCP |
srip128674 | chr8 | 100233000 | 100233000 | - | L1-Ta | germline | . | no | 671 | VPS13B |
srip128938 | chr8 | 114072203 | 114072203 | - | L1-Ta | germline | . | no | 671 | CSMD3 |
srip129691 | chr8 | 121746162 | 121746162 | - | L1-Ta | germline | . | no | 671 | SNTB1 |
srip130423 | chr8 | 137450317 | 137450317 | - | L1-Ta | germline | . | yes | 671 | . |
srip130590 | chr9 | 5023844 | 5023844 | - | L1-Ta | germline | . | no | 671 | JAK2 |
srip131680 | chr9 | 12556845 | 12556845 | - | L1-Ta | germline | . | no | 671 | . |
srip131910 | chr9 | 28111894 | 28111894 | - | L1-Ta | germline | . | yes | 671 | LINGO2 |
srip133216 | chr9 | 32463884 | 32463884 | - | L1-Ta | germline | . | no | 671 | DDX58 |
srip134128 | chr9 | 80014129 | 80014129 | + | L1-Ta | germline | . | no | 671 | VPS13A |
srip134250 | chr9 | 82866814 | 82866814 | + | L1-Ta | germline | . | no | 671 | . |
srip134301 | chr9 | 86065262 | 86065262 | - | L1-Ta | germline | . | no | 671 | FRMD3 |
srip134385 | chr9 | 92917935 | 92917935 | + | L1-Ta | germline | . | yes | 671 | . |
srip134752 | chr9 | 102615582 | 102615582 | - | L1-Ta | germline | . | no | 671 | NR4A3 |
srip134808 | chr9 | 103749297 | 103749297 | + | L1-Ta | germline | . | no | 671 | . |
srip134838 | chr9 | 104443975 | 104443975 | - | L1-Ta | germline | . | no | 671 | GRIN3A |
srip136353 | chrX | 11731399 | 11731399 | + | L1-Ta | germline | . | yes | 671 | . |
srip136515 | chrX | 14152010 | 14152010 | - | L1-Ta | germline | validated | no | 671 | . |
srip137025 | chrX | 49731196 | 49731196 | - | L1-Ta | germline | . | no | 671 | CLCN5 |
srip137061 | chrX | 49784005 | 49784005 | - | L1-Ta | germline | . | no | 671 | CLCN5 |
srip138005 | chrX | 63233094 | 63233094 | - | L1-Ta | germline | . | no | 671 | . |
srip138292 | chrX | 64430988 | 64430988 | + | L1-Ta | germline | . | no | 671 | . |
srip138491 | chrX | 72606851 | 72606851 | + | L1-Ta | germline | . | no | 671 | . |
srip138755 | chrX | 75543182 | 75543182 | - | L1-Ta | germline | . | no | 671 | . |
srip139040 | chrX | 75949601 | 75949601 | + | L1-Ta | germline | . | no | 671 | . |
srip139166 | chrX | 81102668 | 81102668 | + | L1-Ta | germline | . | yes | 671 | . |
srip139292 | chrX | 84028703 | 84028703 | - | L1-Ta | germline | . | no | 671 | . |
srip139363 | chrX | 85701285 | 85701285 | - | L1-Ta | germline | . | no | 671 | DACH2 |
srip139528 | chrX | 94857127 | 94857127 | + | L1-Ta | germline | . | yes | 671 | . |
srip140167 | chrX | 105718545 | 105718545 | + | L1-Ta | germline | . | yes | 671 | . |
srip140566 | chrX | 117098155 | 117098155 | + | L1-Ta | germline | . | yes | 671 | KLHL13 |
srip140630 | chrX | 118569413 | 118569413 | - | L1-Ta | germline | . | no | 671 | SLC25A43 |
srip141234 | chrX | 129525220 | 129525220 | - | L1-Ta | germline | . | no | 671 | . |
srip141499 | chrX | 134162047 | 134162047 | + | L1-Ta | germline | . | no | 671 | . |
srip141627 | chrX | 137146500 | 137146500 | + | L1-Ta | germline | . | no | 671 | . |
srip142139 | chrX | 154745667 | 154745667 | - | L1-Ta | germline | . | no | 671 | TMLHE |