euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

234 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip1647 chr1 74984526 74984526 - L1-Ta germline . no 670 FPGT-TNNI3K;TNNI3K
srip2154 chr1 86398798 86398798 + L1-Ta germline . no 670 COL24A1
srip2241 chr1 87144762 87144762 - L1-Ta germline . no 670 .
srip3249 chr1 105386449 105386449 - L1-Ta germline . no 670 .
srip3975 chr1 121478354 121478354 + L1-Ta germline . yes 670 .
srip4096 chr1 149308424 149308424 + L1-Ta germline . no 670 LOC645262
srip4199 chr1 152462236 152462236 - L1-Ta germline . no 670 .
srip4292 chr1 158238664 158238664 + L1-Ta germline . yes 670 .
srip4570 chr1 163231881 163231881 - L1-Ta germline . no 670 LOC100505773
srip4802 chr1 165940104 165940104 - L1-Ta germline . yes 670 .
srip4836 chr1 166212290 166212290 - L1-Ta germline . yes 670 .
srip5874 chr1 192262235 192262235 - L1-Ta germline . no 670 .
srip6136 chr1 193836827 193836827 + L1-Ta germline . yes 670 .
srip7238 chr1 239786747 239786747 - L1-Ta germline . no 670 .
srip7611 chr10 5293335 5293335 + L1-Ta germline . yes 670 .
srip8825 chr10 42527965 42527965 + L1-Ta germline . no 670 .
srip11230 chr10 110453665 110453665 + L1-Ta germline . no 670 .
srip11292 chr10 110846814 110846814 + L1-Ta germline . yes 670 .
srip12617 chr11 15995864 15995864 - L1-Ta germline . no 670 SOX6
srip12706 chr11 24355519 24355519 + L1-Ta germline . yes 670 .
srip13075 chr11 26418548 26418548 + L1-Ta germline . no 670 ANO3
srip13667 chr11 33670122 33670122 + L1-Ta germline validated no 670 C11orf41
srip16864 chr11 93160197 93160197 + L1-Ta germline . yes 670 CCDC67
srip17271 chr11 95175423 95175423 + L1-Ta germline . no 670 .
srip17398 chr11 99478828 99478828 + L1-Ta germline . yes 670 CNTN5
srip17469 chr11 102847138 102847138 + L1-Ta germline . no 670 .
srip18550 chr11 125412525 125412525 + L1-Ta germline . yes 670 .
srip20302 chr12 14335361 14335361 + L1-Ta germline . yes 670 .
srip22464 chr12 44501995 44501995 - L1-Ta germline . yes 670 TMEM117
srip23002 chr12 61396241 61396241 - L1-Ta germline . no 670 .
srip23415 chr12 70167057 70167057 - L1-Ta germline . no 670 RAB3IP
srip24056 chr12 79570815 79570815 - L1-Ta germline . no 670 SYT1
srip24192 chr12 84011243 84011243 - L1-Ta germline . no 670 .
srip24213 chr12 84955173 84955173 - L1-Ta germline . no 670 .
srip24966 chr12 86633816 86633816 + L1-Ta germline . yes 670 MGAT4C
srip25296 chr12 98672913 98672913 + L1-Ta germline . yes 670 .
srip25358 chr12 102842494 102842494 + L1-Ta germline . no 670 IGF1
srip26132 chr12 126783235 126783235 - L1-Ta germline . no 670 .
srip26399 chr12 126802939 126802939 - L1-Ta germline . no 670 .
srip27603 chr13 33441812 33441812 - L1-Ta germline . no 670 .
srip28372 chr13 57793451 57793451 - L1-Ta germline . no 670 .
srip28479 chr13 59088395 59088395 + L1-Ta germline . no 670 .
srip30326 chr13 72968674 72968674 + L1-Ta germline . no 670 .
srip30523 chr13 77186902 77186902 - L1-Ta germline . no 670 .
srip32064 chr13 86502081 86502081 + L1-Ta germline . no 670 .
srip32231 chr13 88851194 88851194 - L1-Ta germline . no 670 .
srip32411 chr13 91626302 91626302 + L1-Ta germline . no 670 .
srip32460 chr13 92855881 92855881 + L1-Ta germline . yes 670 GPC5
srip36336 chr14 39875096 39875096 + L1-Ta germline validated no 670 FBXO33
srip37102 chr14 52532174 52532174 - L1-Ta germline . no 670 NID2
srip38012 chr14 71020049 71020049 + L1-Ta germline . no 670 .
srip38899 chr14 95605326 95605326 + L1-Ta germline . no 670 DICER1
srip40847 chr15 53448042 53448042 - L1-Ta germline . no 670 .
srip41312 chr15 58012013 58012013 - L1-Ta germline . no 670 .
srip41806 chr15 71027483 71027483 + L1-Ta germline . yes 670 UACA
srip44172 chr16 18832538 18832538 - L1-Ta germline . no 670 SMG1
srip45835 chr16 61079187 61079187 + L1-Ta germline . no 670 .
srip45943 chr16 65729907 65729907 + L1-Ta germline . yes 670 .
srip46576 chr17 9525306 9525306 + L1-Ta germline . yes 670 WDR16
srip47428 chr17 29659591 29659591 - L1-Ta germline . no 670 NF1
srip47607 chr17 32813608 32813608 + L1-Ta germline . no 670 .
srip48616 chr18 836585 836585 - L1-Ta germline . no 670 .
srip48718 chr18 5332408 5332408 - L1-Ta germline . no 670 .
srip49527 chr18 30185593 30185593 - L1-Ta germline . no 670 .
srip49737 chr18 34567457 34567457 + L1-Ta germline . yes 670 KIAA1328
srip50871 chr18 58172211 58172211 - L1-Ta germline . no 670 .
srip50904 chr18 59466362 59466362 + L1-Ta germline . no 670 .
srip51054 chr18 59763726 59763726 - L1-Ta germline . no 670 PIGN
srip51134 chr18 61030433 61030433 - L1-Ta germline . no 670 KDSR
srip51291 chr18 68413712 68413712 - L1-Ta germline . no 670 .
srip51364 chr18 69024727 69024727 + L1-Ta germline . yes 670 .
srip52201 chr19 27735992 27735992 - L1-Ta germline . no 670 .
srip54247 chr2 36570251 36570251 - L1-Ta germline . no 670 .
srip54378 chr2 41777137 41777137 - L1-Ta germline . no 670 .
srip55639 chr2 73354355 73354355 - L1-Ta germline . no 670 .
srip55957 chr2 81834768 81834768 - L1-Ta germline . no 670 .
srip56127 chr2 82098027 82098027 + L1-Ta germline . no 670 .
srip56307 chr2 83068216 83068216 + L1-Ta germline . yes 670 .
srip56998 chr2 108631988 108631988 - L1-Ta germline . no 670 .
srip57337 chr2 116246475 116246475 + L1-Ta germline . no 670 DPP10
srip57403 chr2 118667183 118667183 - L1-Ta germline . no 670 .
srip57616 chr2 126510571 126510571 + L1-Ta germline . yes 670 .
srip57894 chr2 137156377 137156377 - L1-Ta germline . no 670 .
srip57970 chr2 139785112 139785112 - L1-Ta germline . no 670 .
srip58649 chr2 144624534 144624534 + L1-Ta germline . yes 670 .
srip59466 chr2 153864262 153864262 - L1-Ta germline . no 670 .
srip59833 chr2 170111155 170111155 + L1-Ta germline . yes 670 LRP2
srip60169 chr2 178843807 178843807 + L1-Ta germline . yes 670 PDE11A
srip61325 chr2 205631655 205631655 - L1-Ta germline . no 670 PARD3B
srip61613 chr2 212707182 212707182 + L1-Ta germline . no 670 ERBB4
srip61757 chr2 214647628 214647628 - L1-Ta germline . no 670 SPAG16
srip61826 chr2 218176494 218176494 + L1-Ta germline . yes 670 DIRC3
srip63679 chr20 19400466 19400466 - L1-Ta germline . no 670 SLC24A3
srip63981 chr20 23412776 23412776 + L1-Ta germline . yes 670 .
srip64751 chr20 41952103 41952103 - L1-Ta germline . no 670 .
srip65895 chr21 19517309 19517309 - L1-Ta germline . no 670 .
srip66527 chr21 24125137 24125137 + L1-Ta germline . yes 670 .
srip67479 chr22 22486374 22486374 - L1-Ta germline . no 670 IGL@
srip67739 chr22 22715585 22715585 + L1-Ta germline . no 670 IGL@
srip68239 chr22 29065287 29065287 + L1-Ta germline . yes 670 TTC28
srip68785 chr22 44324601 44324601 - L1-Ta germline . no 670 PNPLA3
srip69687 chr3 656444 656444 - L1-Ta germline validated no 670 .
srip69754 chr3 2050178 2050178 + L1-Ta germline . yes 670 .
srip69872 chr3 4080917 4080917 - L1-Ta germline . yes 670 .
srip71200 chr3 27135216 27135216 + L1-Ta germline . no 670 .
srip72122 chr3 46824583 46824583 - L1-Ta germline . no 670 .
srip73354 chr3 59852889 59852889 + L1-Ta germline . no 670 FHIT
srip73570 chr3 75005137 75005137 + L1-Ta germline . no 670 .
srip74021 chr3 79216302 79216302 + L1-Ta germline . no 670 ROBO1
srip74608 chr3 81770349 81770349 + L1-Ta germline . yes 670 GBE1
srip74974 chr3 83853124 83853124 - L1-Ta germline . no 670 .
srip76391 chr3 103275235 103275235 - L1-Ta germline . no 670 .
srip76492 chr3 105473860 105473860 - L1-Ta germline . no 670 CBLB
srip76583 chr3 108924737 108924737 + L1-Ta germline . yes 670 .
srip76664 chr3 109836400 109836400 - L1-Ta germline . no 670 .
srip77110 chr3 123590712 123590712 + L1-Ta germline validated no 670 MYLK
srip77380 chr3 129972765 129972765 + L1-Ta germline . yes 670 COL6A4P2
srip77432 chr3 130352893 130352893 + L1-Ta germline . yes 670 COL6A6
srip77580 chr3 132664831 132664831 - L1-Ta germline . no 670 .
srip78858 chr3 152311594 152311594 - L1-Ta germline . no 670 .
srip78872 chr3 152701320 152701320 + L1-Ta germline . no 670 .
srip78933 chr3 154632590 154632590 + L1-Ta germline . yes 670 .
srip79229 chr3 158813156 158813156 - L1-Ta germline . yes 670 IQCJ;IQCJ-SCHIP1
srip80207 chr3 175677955 175677955 - L1-Ta germline . no 670 .
srip80325 chr3 176091321 176091321 + L1-Ta germline . no 670 .
srip81386 chr3 186372123 186372123 + L1-Ta germline . no 670 .
srip81607 chr3 187835306 187835306 - L1-Ta germline . no 670 .
srip82335 chr4 7995690 7995690 - L1-Ta germline . no 670 ABLIM2
srip82709 chr4 16950725 16950725 + L1-Ta germline . yes 670 .
srip83611 chr4 26929329 26929329 + L1-Ta germline . no 670 STIM2
srip83823 chr4 29321850 29321850 + L1-Ta germline . no 670 .
srip84566 chr4 46799112 46799112 + L1-Ta germline . yes 670 COX7B2
srip84613 chr4 46883027 46883027 + L1-Ta germline . no 670 .
srip84670 chr4 47007779 47007779 - L1-Ta germline . no 670 .
srip85012 chr4 48738022 48738022 + L1-Ta germline . no 670 FRYL
srip85050 chr4 49057917 49057917 - L1-Ta germline . no 670 CWH43
srip85870 chr4 59442445 59442445 - L1-Ta germline . no 670 .
srip85953 chr4 60204535 60204535 + L1-Ta germline . no 670 .
srip87081 chr4 71200089 71200089 + L1-Ta germline . no 670 .
srip87176 chr4 79032904 79032904 + L1-Ta germline . yes 670 FRAS1
srip87432 chr4 80864880 80864880 + L1-Ta germline . yes 670 ANTXR2
srip90839 chr4 120869874 120869874 - L1-Ta germline . no 670 .
srip92315 chr4 136006539 136006539 + L1-Ta germline . no 670 .
srip93172 chr4 147543284 147543284 + L1-Ta germline . no 670 .
srip93944 chr4 158919186 158919186 - L1-Ta germline validated no 670 .
srip94151 chr4 167369021 167369021 - L1-Ta germline . no 670 .
srip94467 chr4 170281916 170281916 - L1-Ta germline . no 670 .
srip94527 chr4 170436610 170436610 - L1-Ta germline . no 670 NEK1
srip95737 chr5 7603653 7603653 - L1-Ta germline . no 670 ADCY2
srip96409 chr5 12197468 12197468 - L1-Ta germline . yes 670 .
srip96864 chr5 20644380 20644380 - L1-Ta germline . no 670 .
srip97792 chr5 33633345 33633345 - L1-Ta germline . no 670 ADAMTS12
srip98299 chr5 41403382 41403382 - L1-Ta germline . no 670 PLCXD3
srip98841 chr5 51488295 51488295 - L1-Ta germline . no 670 .
srip99086 chr5 57279515 57279515 + L1-Ta germline validated no 670 .
srip101452 chr5 99981611 99981611 + L1-Ta germline . yes 670 .
srip101529 chr5 105483500 105483500 - L1-Ta germline . no 670 .
srip102232 chr5 109480258 109480258 - L1-Ta germline validated no 670 .
srip102588 chr5 110474800 110474800 + L1-Ta germline . yes 670 .
srip102822 chr5 118941211 118941211 + L1-Ta germline . no 670 .
srip103015 chr5 124907258 124907258 + L1-Ta germline . yes 670 .
srip103940 chr5 138420464 138420464 + L1-Ta germline . yes 670 SIL1
srip104267 chr5 144473640 144473640 + L1-Ta germline . no 670 .
srip105883 chr5 165848548 165848548 + L1-Ta germline . yes 670 .
srip106065 chr5 172829796 172829796 - L1-Ta germline . no 670 .
srip106631 chr6 2418002 2418002 - L1-Ta germline . no 670 .
srip107696 chr6 18910854 18910854 - L1-Ta germline . no 670 .
srip108217 chr6 39645329 39645329 - L1-Ta germline . yes 670 KIF6
srip108750 chr6 48868435 48868435 - L1-Ta germline . no 670 .
srip108881 chr6 55594843 55594843 - L1-Ta germline . no 670 .
srip109855 chr6 66787597 66787597 - L1-Ta germline . no 670 .
srip110897 chr6 77980636 77980636 - L1-Ta germline . no 670 .
srip111370 chr6 84049691 84049691 + L1-Ta germline . yes 670 ME1
srip112022 chr6 91669505 91669505 - L1-Ta germline . no 670 .
srip112936 chr6 113030984 113030984 + L1-Ta germline . no 670 LOC100287612
srip113105 chr6 115899917 115899917 - L1-Ta germline . no 670 .
srip113522 chr6 133341827 133341827 - L1-Ta germline . no 670 .
srip113592 chr6 136712687 136712687 + L1-Ta germline . yes 670 MAP7
srip113846 chr6 142450109 142450109 - L1-Ta germline . no 670 .
srip115757 chr6 162404960 162404960 + L1-Ta germline . no 670 PARK2
srip116545 chr7 25081462 25081462 - L1-Ta germline . no 670 .
srip116669 chr7 28783416 28783416 - L1-Ta germline . no 670 CREB5
srip116734 chr7 30484894 30484894 + L1-Ta germline . no 670 NOD1
srip117150 chr7 46350337 46350337 - L1-Ta germline . no 670 .
srip118579 chr7 69668336 69668336 + L1-Ta germline . yes 670 AUTS2
srip118635 chr7 69828469 69828469 + L1-Ta germline . no 670 AUTS2
srip120439 chr7 89704574 89704574 + L1-Ta germline . no 670 .
srip121450 chr7 107829247 107829247 + L1-Ta germline . no 670 NRCAM
srip122086 chr7 109548699 109548699 + L1-Ta germline . no 670 .
srip122363 chr7 112789581 112789581 - L1-Ta germline . no 670 .
srip122500 chr7 113139394 113139394 + L1-Ta germline . yes 670 .
srip123021 chr7 129507566 129507566 + L1-Ta germline . no 670 UBE2H
srip123079 chr7 130386823 130386823 - L1-Ta germline . no 670 .
srip123468 chr7 145063368 145063368 + L1-Ta germline . yes 670 .
srip124355 chr8 5829277 5829277 - L1-Ta germline . no 670 .
srip124799 chr8 9597567 9597567 + L1-Ta germline . yes 670 TNKS
srip125020 chr8 18768149 18768149 + L1-Ta germline . yes 670 PSD3
srip126987 chr8 71583563 71583563 - L1-Ta germline . no 670 XKR9
srip128520 chr8 97911008 97911008 + L1-Ta germline . yes 670 PGCP
srip128673 chr8 100233000 100233000 - L1-Ta germline . no 670 VPS13B
srip128937 chr8 114072203 114072203 - L1-Ta germline . no 670 CSMD3
srip130422 chr8 137450317 137450317 - L1-Ta germline . yes 670 .
srip130517 chr9 1337904 1337904 - L1-Ta germline . no 670 .
srip131105 chr9 6290488 6290488 + L1-Ta germline . no 670 .
srip131641 chr9 10137698 10137698 + L1-Ta germline . yes 670 PTPRD
srip131909 chr9 28111894 28111894 - L1-Ta germline . yes 670 LINGO2
srip133215 chr9 32463884 32463884 - L1-Ta germline . no 670 DDX58
srip134127 chr9 80014129 80014129 + L1-Ta germline . no 670 VPS13A
srip134384 chr9 92917935 92917935 + L1-Ta germline . yes 670 .
srip134594 chr9 98465870 98465870 + L1-Ta germline . yes 670 .
srip134751 chr9 102615582 102615582 - L1-Ta germline . no 670 NR4A3
srip135113 chr9 105162482 105162482 - L1-Ta germline . no 670 .
srip135222 chr9 106501597 106501597 - L1-Ta germline . no 670 .
srip136352 chrX 11731399 11731399 + L1-Ta germline . yes 670 .
srip136898 chrX 34837319 34837319 - L1-Ta germline . no 670 .
srip138004 chrX 63233094 63233094 - L1-Ta germline . no 670 .
srip138490 chrX 72606851 72606851 + L1-Ta germline . no 670 .
srip138754 chrX 75543182 75543182 - L1-Ta germline . no 670 .
srip139039 chrX 75949601 75949601 + L1-Ta germline . no 670 .
srip139165 chrX 81102668 81102668 + L1-Ta germline . yes 670 .
srip139184 chrX 81746647 81746647 - L1-Ta germline . no 670 .
srip139527 chrX 94857127 94857127 + L1-Ta germline . yes 670 .
srip140166 chrX 105718545 105718545 + L1-Ta germline . yes 670 .
srip140333 chrX 111557678 111557678 - L1-Ta germline . no 670 ZCCHC16
srip140525 chrX 116025283 116025283 + L1-Ta germline . no 670 .
srip140629 chrX 118569413 118569413 - L1-Ta germline . no 670 SLC25A43
srip140853 chrX 120397638 120397638 - L1-Ta germline . no 670 .
srip141446 chrX 130140534 130140534 + L1-Ta germline . no 670 .
srip141626 chrX 137146500 137146500 + L1-Ta germline . no 670 .
srip141986 chrX 141571641 141571641 + L1-Ta germline . yes 670 .
srip142138 chrX 154745667 154745667 - L1-Ta germline . no 670 TMLHE
srip142331 chrY 13878597 13878597 + L1-Ta germline . no 670 .
srip142450 chrY 19486845 19486845 - L1-Ta germline . no 670 .
srip142469 chrY 22852197 22852197 - L1-Ta germline . no 670 .