euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

190 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip539 chr1 42483962 42483962 + L1-Ta germline . no 667 HIVEP3
srip916 chr1 56834937 56834937 + L1-Ta germline . yes 667 .
srip1188 chr1 65909392 65909392 - L1-Ta germline . no 667 LEPR
srip1229 chr1 67544154 67544154 - L1-Ta germline . no 667 .
srip1644 chr1 74984526 74984526 - L1-Ta germline . no 667 FPGT-TNNI3K;TNNI3K
srip2151 chr1 86398798 86398798 + L1-Ta germline . no 667 COL24A1
srip2238 chr1 87144762 87144762 - L1-Ta germline . no 667 .
srip2592 chr1 99678977 99678977 - L1-Ta germline . no 667 .
srip2645 chr1 99854086 99854086 - L1-Ta germline . no 667 .
srip3246 chr1 105386449 105386449 - L1-Ta germline . no 667 .
srip3972 chr1 121478354 121478354 + L1-Ta germline . yes 667 .
srip4289 chr1 158238664 158238664 + L1-Ta germline . yes 667 .
srip4801 chr1 165940104 165940104 - L1-Ta germline . yes 667 .
srip5829 chr1 192072266 192072266 - L1-Ta germline . no 667 .
srip6134 chr1 193836827 193836827 + L1-Ta germline . yes 667 .
srip6478 chr1 218182567 218182567 - L1-Ta germline . no 667 .
srip7046 chr1 228058514 228058514 - L1-Ta germline . yes 667 .
srip7609 chr10 5293335 5293335 + L1-Ta germline . yes 667 .
srip8715 chr10 32929792 32929792 - L1-Ta germline . no 667 C10orf68
srip8975 chr10 58863547 58863547 - L1-Ta germline . no 667 .
srip10787 chr10 107137008 107137008 - L1-Ta germline . no 667 .
srip11289 chr10 110846814 110846814 + L1-Ta germline . yes 667 .
srip13200 chr11 29184429 29184429 + L1-Ta germline . no 667 .
srip14401 chr11 41869864 41869864 + L1-Ta germline . no 667 .
srip15527 chr11 59815986 59815986 - L1-Ta germline . no 667 .
srip16781 chr11 87051059 87051059 - L1-Ta germline . no 667 .
srip17268 chr11 95175423 95175423 + L1-Ta germline . no 667 .
srip20299 chr12 14335361 14335361 + L1-Ta germline . yes 667 .
srip21751 chr12 38288034 38288034 - L1-Ta germline . no 667 .
srip22462 chr12 44501995 44501995 - L1-Ta germline . yes 667 TMEM117
srip23412 chr12 70167057 70167057 - L1-Ta germline . no 667 RAB3IP
srip24211 chr12 84955173 84955173 - L1-Ta germline . no 667 .
srip25293 chr12 98672913 98672913 + L1-Ta germline . yes 667 .
srip26397 chr12 126802939 126802939 - L1-Ta germline . no 667 .
srip27600 chr13 33441812 33441812 - L1-Ta germline . no 667 .
srip30522 chr13 77186902 77186902 - L1-Ta germline . no 667 .
srip32228 chr13 88851194 88851194 - L1-Ta germline . no 667 .
srip32457 chr13 92855881 92855881 + L1-Ta germline . yes 667 GPC5
srip36407 chr14 41197899 41197899 - L1-Ta germline . no 667 .
srip37082 chr14 51412021 51412021 - L1-Ta germline validated no 667 .
srip38009 chr14 71020049 71020049 + L1-Ta germline . no 667 .
srip38896 chr14 95605326 95605326 + L1-Ta germline . no 667 DICER1
srip39961 chr15 47507271 47507271 - L1-Ta germline . no 667 SEMA6D
srip40785 chr15 51875289 51875289 - L1-Ta germline . no 667 DMXL2
srip40844 chr15 53448042 53448042 - L1-Ta germline . no 667 .
srip41310 chr15 58012013 58012013 - L1-Ta germline . no 667 .
srip43853 chr16 7925421 7925421 + L1-Ta germline . no 667 .
srip45796 chr16 60913935 60913935 + L1-Ta germline . no 667 .
srip45940 chr16 65729907 65729907 + L1-Ta germline . yes 667 .
srip46575 chr17 9525306 9525306 + L1-Ta germline . yes 667 WDR16
srip47238 chr17 28398312 28398312 + L1-Ta germline . no 667 EFCAB5
srip47493 chr17 32192799 32192799 + L1-Ta germline . yes 667 ACCN1
srip48715 chr18 5332408 5332408 - L1-Ta germline . no 667 .
srip49524 chr18 30185593 30185593 - L1-Ta germline . no 667 .
srip49735 chr18 34567457 34567457 + L1-Ta germline . yes 667 KIAA1328
srip50781 chr18 51762741 51762741 - L1-Ta germline . no 667 .
srip51131 chr18 61030433 61030433 - L1-Ta germline . no 667 KDSR
srip51218 chr18 63446487 63446487 - L1-Ta germline . no 667 CDH7
srip51288 chr18 68413712 68413712 - L1-Ta germline . no 667 .
srip51361 chr18 69024727 69024727 + L1-Ta germline . yes 667 .
srip53601 chr2 23191016 23191016 - L1-Ta germline . no 667 .
srip54568 chr2 42051402 42051402 + L1-Ta germline . no 667 .
srip55636 chr2 73354355 73354355 - L1-Ta germline . no 667 .
srip55954 chr2 81834768 81834768 - L1-Ta germline . no 667 .
srip56304 chr2 83068216 83068216 + L1-Ta germline . yes 667 .
srip56571 chr2 88206937 88206937 + L1-Ta germline . yes 667 .
srip57334 chr2 116246475 116246475 + L1-Ta germline . no 667 DPP10
srip57614 chr2 126510571 126510571 + L1-Ta germline . yes 667 .
srip58359 chr2 142788891 142788891 - L1-Ta germline . no 667 LRP1B
srip58646 chr2 144624534 144624534 + L1-Ta germline . yes 667 .
srip59463 chr2 153864262 153864262 - L1-Ta germline . no 667 .
srip59935 chr2 176346680 176346680 - L1-Ta germline . no 667 .
srip61323 chr2 205631655 205631655 - L1-Ta germline . no 667 PARD3B
srip61754 chr2 214647628 214647628 - L1-Ta germline . no 667 SPAG16
srip61823 chr2 218176494 218176494 + L1-Ta germline . yes 667 DIRC3
srip62701 chr2 239902375 239902375 - L1-Ta germline . no 667 .
srip63295 chr20 12781652 12781652 - L1-Ta germline . no 667 .
srip66525 chr21 24125137 24125137 + L1-Ta germline . yes 667 .
srip67069 chr21 30911132 30911132 + L1-Ta germline . no 667 GRIK1
srip67476 chr22 22486374 22486374 - L1-Ta germline . no 667 IGL@
srip68236 chr22 29065287 29065287 + L1-Ta germline . yes 667 TTC28
srip69684 chr3 656444 656444 - L1-Ta germline validated no 667 .
srip69752 chr3 2050178 2050178 + L1-Ta germline . yes 667 .
srip70546 chr3 21234919 21234919 + L1-Ta germline . no 667 .
srip70638 chr3 22097802 22097802 + L1-Ta germline . no 667 LOC100505836
srip70847 chr3 25740941 25740941 - L1-Ta germline . no 667 .
srip70906 chr3 26439488 26439488 - L1-Ta germline . no 667 .
srip71993 chr3 41821477 41821477 + L1-Ta germline . yes 667 ULK4
srip72119 chr3 46824583 46824583 - L1-Ta germline . no 667 .
srip74605 chr3 81770349 81770349 + L1-Ta germline . yes 667 GBE1
srip75816 chr3 86264945 86264945 - L1-Ta germline validated no 667 .
srip76389 chr3 103275235 103275235 - L1-Ta germline . no 667 .
srip76489 chr3 105473860 105473860 - L1-Ta germline . no 667 CBLB
srip76581 chr3 108924737 108924737 + L1-Ta germline . yes 667 .
srip76661 chr3 109836400 109836400 - L1-Ta germline . no 667 .
srip77108 chr3 123590712 123590712 + L1-Ta germline validated no 667 MYLK
srip77377 chr3 129972765 129972765 + L1-Ta germline . yes 667 COL6A4P2
srip77577 chr3 132664831 132664831 - L1-Ta germline . no 667 .
srip77823 chr3 137073450 137073450 + L1-Ta germline . no 667 .
srip78930 chr3 154632590 154632590 + L1-Ta germline . yes 667 .
srip79227 chr3 158813156 158813156 - L1-Ta germline . yes 667 IQCJ;IQCJ-SCHIP1
srip80920 chr3 182952475 182952475 - L1-Ta germline . no 667 MCF2L2
srip81384 chr3 186372123 186372123 + L1-Ta germline . no 667 .
srip81604 chr3 187835306 187835306 - L1-Ta germline . no 667 .
srip82707 chr4 16950725 16950725 + L1-Ta germline . yes 667 .
srip83608 chr4 26929329 26929329 + L1-Ta germline . no 667 STIM2
srip84564 chr4 46799112 46799112 + L1-Ta germline . yes 667 COX7B2
srip84946 chr4 48416463 48416463 - L1-Ta germline . no 667 SLAIN2
srip85009 chr4 48738022 48738022 + L1-Ta germline . no 667 FRYL
srip85048 chr4 49057917 49057917 - L1-Ta germline . no 667 CWH43
srip87080 chr4 71200089 71200089 + L1-Ta germline . no 667 .
srip87173 chr4 79032904 79032904 + L1-Ta germline . yes 667 FRAS1
srip87472 chr4 80894074 80894074 + L1-Ta germline . yes 667 ANTXR2
srip88149 chr4 98103815 98103815 - L1-Ta germline validated no 667 .
srip88351 chr4 99513572 99513572 - L1-Ta germline . no 667 TSPAN5
srip92312 chr4 136006539 136006539 + L1-Ta germline . no 667 .
srip93169 chr4 147543284 147543284 + L1-Ta germline . no 667 .
srip94148 chr4 167369021 167369021 - L1-Ta germline . no 667 .
srip94383 chr4 167683070 167683070 + L1-Ta germline . no 667 SPOCK3
srip94465 chr4 170281916 170281916 - L1-Ta germline . no 667 .
srip94524 chr4 170436610 170436610 - L1-Ta germline . no 667 NEK1
srip95114 chr4 182695155 182695155 - L1-Ta germline . no 667 .
srip96407 chr5 12197468 12197468 - L1-Ta germline . yes 667 .
srip98838 chr5 51488295 51488295 - L1-Ta germline . no 667 .
srip101449 chr5 99981611 99981611 + L1-Ta germline . yes 667 .
srip101527 chr5 105483500 105483500 - L1-Ta germline . no 667 .
srip102229 chr5 109480258 109480258 - L1-Ta germline validated no 667 .
srip103293 chr5 125040040 125040040 + L1-Ta germline . no 667 .
srip103937 chr5 138420464 138420464 + L1-Ta germline . yes 667 SIL1
srip104360 chr5 147337963 147337963 - L1-Ta germline . no 667 .
srip105144 chr5 155619862 155619862 + L1-Ta germline . no 667 .
srip106062 chr5 172829796 172829796 - L1-Ta germline . no 667 .
srip106109 chr5 177205284 177205284 + L1-Ta germline . no 667 FAM153A
srip106628 chr6 2418002 2418002 - L1-Ta germline . no 667 .
srip107693 chr6 18910854 18910854 - L1-Ta germline . no 667 .
srip108214 chr6 39645329 39645329 - L1-Ta germline . yes 667 KIF6
srip108878 chr6 55594843 55594843 - L1-Ta germline . no 667 .
srip108941 chr6 56729309 56729309 - L1-Ta germline validated no 667 LOC100652827
srip110148 chr6 70726265 70726265 + L1-Ta germline . yes 667 COL19A1
srip110375 chr6 73995229 73995229 - L1-Ta germline . no 667 C6orf147
srip110428 chr6 74865444 74865444 - L1-Ta germline . no 667 .
srip110896 chr6 77980636 77980636 - L1-Ta germline . no 667 .
srip111369 chr6 84049691 84049691 + L1-Ta germline . yes 667 ME1
srip112020 chr6 91669505 91669505 - L1-Ta germline . no 667 .
srip112933 chr6 113030984 113030984 + L1-Ta germline . no 667 LOC100287612
srip113171 chr6 121489953 121489953 + L1-Ta germline . no 667 C6orf170
srip113410 chr6 125643206 125643206 + L1-Ta germline . yes 667 .
srip113589 chr6 136712687 136712687 + L1-Ta germline . yes 667 MAP7
srip113844 chr6 142450109 142450109 - L1-Ta germline . no 667 .
srip114837 chr6 153029982 153029982 - L1-Ta germline . no 667 MYCT1
srip115755 chr6 162404960 162404960 + L1-Ta germline . no 667 PARK2
srip116495 chr7 24412246 24412246 + L1-Ta germline validated no 667 .
srip116542 chr7 25081462 25081462 - L1-Ta germline . no 667 .
srip116731 chr7 30484894 30484894 + L1-Ta germline . no 667 NOD1
srip118577 chr7 69668336 69668336 + L1-Ta germline . yes 667 AUTS2
srip118632 chr7 69828469 69828469 + L1-Ta germline . no 667 AUTS2
srip120768 chr7 93146616 93146616 - L1-Ta germline . no 667 CALCR
srip122083 chr7 109548699 109548699 + L1-Ta germline . no 667 .
srip122333 chr7 111609264 111609264 + L1-Ta germline . yes 667 DOCK4
srip122497 chr7 113139394 113139394 + L1-Ta germline . yes 667 .
srip123018 chr7 129507566 129507566 + L1-Ta germline . no 667 UBE2H
srip123077 chr7 130386823 130386823 - L1-Ta germline . no 667 .
srip123211 chr7 141620449 141620449 - L1-Ta germline . no 667 .
srip123465 chr7 145063368 145063368 + L1-Ta germline . yes 667 .
srip124352 chr8 5829277 5829277 - L1-Ta germline . no 667 .
srip124796 chr8 9597567 9597567 + L1-Ta germline . yes 667 TNKS
srip125017 chr8 18768149 18768149 + L1-Ta germline . yes 667 PSD3
srip125592 chr8 25503632 25503632 - L1-Ta germline . no 667 .
srip128517 chr8 97911008 97911008 + L1-Ta germline . yes 667 PGCP
srip128670 chr8 100233000 100233000 - L1-Ta germline . no 667 VPS13B
srip128934 chr8 114072203 114072203 - L1-Ta germline . no 667 CSMD3
srip130419 chr8 137450317 137450317 - L1-Ta germline . yes 667 .
srip131638 chr9 10137698 10137698 + L1-Ta germline . yes 667 PTPRD
srip132419 chr9 30674435 30674435 - L1-Ta germline . no 667 .
srip134124 chr9 80014129 80014129 + L1-Ta germline . no 667 VPS13A
srip134299 chr9 86065262 86065262 - L1-Ta germline . no 667 FRMD3
srip134591 chr9 98465870 98465870 + L1-Ta germline . yes 667 .
srip134749 chr9 102615582 102615582 - L1-Ta germline . no 667 NR4A3
srip134806 chr9 103749297 103749297 + L1-Ta germline . no 667 .
srip136349 chrX 11731399 11731399 + L1-Ta germline . yes 667 .
srip136579 chrX 17074133 17074133 + L1-Ta germline . no 667 REPS2
srip138001 chrX 63233094 63233094 - L1-Ta germline . no 667 .
srip138376 chrX 67263241 67263241 + L1-Ta germline . no 667 OPHN1
srip138751 chrX 75543182 75543182 - L1-Ta germline . no 667 .
srip139525 chrX 94857127 94857127 + L1-Ta germline . yes 667 .
srip139768 chrX 98264296 98264296 - L1-Ta germline validated no 667 .
srip140331 chrX 111557678 111557678 - L1-Ta germline . no 667 ZCCHC16
srip140626 chrX 118569413 118569413 - L1-Ta germline . no 667 SLC25A43
srip142056 chrX 146741330 146741330 + L1-Ta germline . no 667 .
srip142135 chrX 154745667 154745667 - L1-Ta germline . no 667 TMLHE