euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

210 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip340 chr1 41201714 41201714 - L1-Ta germline . no 664 NFYC
srip1642 chr1 74984526 74984526 - L1-Ta germline . no 664 FPGT-TNNI3K;TNNI3K
srip2148 chr1 86398798 86398798 + L1-Ta germline . no 664 COL24A1
srip2235 chr1 87144762 87144762 - L1-Ta germline . no 664 .
srip2589 chr1 99678977 99678977 - L1-Ta germline . no 664 .
srip2642 chr1 99854086 99854086 - L1-Ta germline . no 664 .
srip3243 chr1 105386449 105386449 - L1-Ta germline . no 664 .
srip4091 chr1 149308424 149308424 + L1-Ta germline . no 664 LOC645262
srip4240 chr1 157732948 157732948 + L1-Ta germline . no 664 FCRL2
srip4286 chr1 158238664 158238664 + L1-Ta germline . yes 664 .
srip4833 chr1 166212290 166212290 - L1-Ta germline . yes 664 .
srip5872 chr1 192262235 192262235 - L1-Ta germline . no 664 .
srip6131 chr1 193836827 193836827 + L1-Ta germline . yes 664 .
srip6968 chr1 223491176 223491176 - L1-Ta germline . yes 664 SUSD4
srip7606 chr10 5293335 5293335 + L1-Ta germline . yes 664 .
srip8712 chr10 32929792 32929792 - L1-Ta germline . no 664 C10orf68
srip8904 chr10 53192462 53192462 - L1-Ta germline validated no 664 PRKG1
srip8972 chr10 58863547 58863547 - L1-Ta germline . no 664 .
srip10785 chr10 107137008 107137008 - L1-Ta germline . no 664 .
srip11228 chr10 110453665 110453665 + L1-Ta germline . no 664 .
srip11286 chr10 110846814 110846814 + L1-Ta germline . yes 664 .
srip12613 chr11 15995864 15995864 - L1-Ta germline . no 664 SOX6
srip15152 chr11 56218470 56218470 - L1-Ta germline . no 664 .
srip17265 chr11 95175423 95175423 + L1-Ta germline . no 664 .
srip17393 chr11 99478828 99478828 + L1-Ta germline . yes 664 CNTN5
srip20297 chr12 14335361 14335361 + L1-Ta germline . yes 664 .
srip20443 chr12 25775835 25775835 - L1-Ta germline . no 664 IFLTD1
srip21923 chr12 42238062 42238062 - L1-Ta germline . no 664 .
srip22424 chr12 43979629 43979629 + L1-Ta germline . no 664 .
srip22459 chr12 44501995 44501995 - L1-Ta germline . yes 664 TMEM117
srip23410 chr12 70167057 70167057 - L1-Ta germline . no 664 RAB3IP
srip24978 chr12 87394030 87394030 + L1-Ta germline . no 664 .
srip25290 chr12 98672913 98672913 + L1-Ta germline . yes 664 .
srip26396 chr12 126802939 126802939 - L1-Ta germline . no 664 .
srip27597 chr13 33441812 33441812 - L1-Ta germline . no 664 .
srip28367 chr13 57793451 57793451 - L1-Ta germline . no 664 .
srip28475 chr13 59088395 59088395 + L1-Ta germline . no 664 .
srip28693 chr13 61462318 61462318 - L1-Ta germline . no 664 .
srip32225 chr13 88851194 88851194 - L1-Ta germline . no 664 .
srip33692 chr13 104704163 104704163 + L1-Ta germline . yes 664 .
srip35330 chr14 30525248 30525248 + L1-Ta germline . no 664 .
srip36360 chr14 40098407 40098407 - L1-Ta germline . no 664 .
srip36404 chr14 41197899 41197899 - L1-Ta germline . no 664 .
srip37022 chr14 48662336 48662336 + L1-Ta germline . no 664 .
srip38408 chr14 86149587 86149587 + L1-Ta germline . no 664 .
srip38893 chr14 95605326 95605326 + L1-Ta germline . no 664 DICER1
srip38939 chr14 104734925 104734925 - L1-Ta germline . no 664 .
srip38979 chr15 20022208 20022208 - L1-Ta germline . no 664 .
srip39098 chr15 24383900 24383900 + L1-Ta germline . yes 664 .
srip39958 chr15 47507271 47507271 - L1-Ta germline . no 664 SEMA6D
srip40782 chr15 51875289 51875289 - L1-Ta germline . no 664 DMXL2
srip40841 chr15 53448042 53448042 - L1-Ta germline . no 664 .
srip41307 chr15 58012013 58012013 - L1-Ta germline . no 664 .
srip41685 chr15 61756182 61756182 + L1-Ta germline . no 664 .
srip43850 chr16 7925421 7925421 + L1-Ta germline . no 664 .
srip44168 chr16 18832538 18832538 - L1-Ta germline . no 664 SMG1
srip45937 chr16 65729907 65729907 + L1-Ta germline . yes 664 .
srip46573 chr17 9525306 9525306 + L1-Ta germline . yes 664 WDR16
srip47423 chr17 29659591 29659591 - L1-Ta germline . no 664 NF1
srip48712 chr18 5332408 5332408 - L1-Ta germline . no 664 .
srip49050 chr18 23067399 23067399 + L1-Ta germline . no 664 .
srip49521 chr18 30185593 30185593 - L1-Ta germline . no 664 .
srip49733 chr18 34567457 34567457 + L1-Ta germline . yes 664 KIAA1328
srip50033 chr18 49216228 49216228 - L1-Ta germline . no 664 .
srip50778 chr18 51762741 51762741 - L1-Ta germline . no 664 .
srip51050 chr18 59763726 59763726 - L1-Ta germline . no 664 PIGN
srip51129 chr18 61030433 61030433 - L1-Ta germline . no 664 KDSR
srip51217 chr18 63446487 63446487 - L1-Ta germline . no 664 CDH7
srip51285 chr18 68413712 68413712 - L1-Ta germline . no 664 .
srip51318 chr18 68705834 68705834 - L1-Ta somatic validated no 664 .
srip51358 chr18 69024727 69024727 + L1-Ta germline . yes 664 .
srip54376 chr2 41777137 41777137 - L1-Ta germline . no 664 .
srip55311 chr2 69168903 69168903 - L1-Ta germline . no 664 .
srip55633 chr2 73354355 73354355 - L1-Ta germline . no 664 .
srip55702 chr2 77963239 77963239 + L1-Ta germline validated no 664 .
srip55951 chr2 81834768 81834768 - L1-Ta germline . no 664 .
srip56993 chr2 108631988 108631988 - L1-Ta germline . no 664 .
srip57331 chr2 116246475 116246475 + L1-Ta germline . no 664 DPP10
srip57398 chr2 118667183 118667183 - L1-Ta germline . no 664 .
srip57967 chr2 139785112 139785112 - L1-Ta germline . no 664 .
srip58356 chr2 142788891 142788891 - L1-Ta germline . no 664 LRP1B
srip59934 chr2 176346680 176346680 - L1-Ta germline . no 664 .
srip60698 chr2 187318335 187318335 - L1-Ta germline validated no 664 .
srip61320 chr2 205631655 205631655 - L1-Ta germline . no 664 PARD3B
srip61751 chr2 214647628 214647628 - L1-Ta germline . no 664 SPAG16
srip61820 chr2 218176494 218176494 + L1-Ta germline . yes 664 DIRC3
srip62699 chr2 239902375 239902375 - L1-Ta germline . no 664 .
srip63292 chr20 12781652 12781652 - L1-Ta germline . no 664 .
srip66522 chr21 24125137 24125137 + L1-Ta germline . yes 664 .
srip67473 chr22 22486374 22486374 - L1-Ta germline . no 664 IGL@
srip68233 chr22 29065287 29065287 + L1-Ta germline . yes 664 TTC28
srip69681 chr3 656444 656444 - L1-Ta germline validated no 664 .
srip69869 chr3 4080917 4080917 - L1-Ta germline . yes 664 .
srip70544 chr3 21234919 21234919 + L1-Ta germline . no 664 .
srip70844 chr3 25740941 25740941 - L1-Ta germline . no 664 .
srip70903 chr3 26439488 26439488 - L1-Ta germline . no 664 .
srip71364 chr3 33554072 33554072 + L1-Ta germline . no 664 CLASP2
srip72116 chr3 46824583 46824583 - L1-Ta germline . no 664 .
srip73350 chr3 59852889 59852889 + L1-Ta germline . no 664 FHIT
srip74019 chr3 79216302 79216302 + L1-Ta germline . no 664 ROBO1
srip74973 chr3 83853124 83853124 - L1-Ta germline . no 664 .
srip76128 chr3 98775497 98775497 - L1-Ta germline . no 664 .
srip76486 chr3 105473860 105473860 - L1-Ta germline . no 664 CBLB
srip76658 chr3 109836400 109836400 - L1-Ta germline . no 664 .
srip77374 chr3 129972765 129972765 + L1-Ta germline . yes 664 COL6A4P2
srip77574 chr3 132664831 132664831 - L1-Ta germline . no 664 .
srip77820 chr3 137073450 137073450 + L1-Ta germline . no 664 .
srip79224 chr3 158813156 158813156 - L1-Ta germline . yes 664 IQCJ;IQCJ-SCHIP1
srip79864 chr3 169269954 169269954 + L1-Ta germline . no 664 MECOM
srip80320 chr3 176091321 176091321 + L1-Ta germline . no 664 .
srip80919 chr3 182952475 182952475 - L1-Ta germline . no 664 MCF2L2
srip81382 chr3 186372123 186372123 + L1-Ta germline . no 664 .
srip81601 chr3 187835306 187835306 - L1-Ta germline . no 664 .
srip82704 chr4 16950725 16950725 + L1-Ta germline . yes 664 .
srip83605 chr4 26929329 26929329 + L1-Ta germline . no 664 STIM2
srip84561 chr4 46799112 46799112 + L1-Ta germline . yes 664 COX7B2
srip84608 chr4 46883027 46883027 + L1-Ta germline . no 664 .
srip85006 chr4 48738022 48738022 + L1-Ta germline . no 664 FRYL
srip85866 chr4 59442445 59442445 - L1-Ta germline . no 664 .
srip87078 chr4 71200089 71200089 + L1-Ta germline . no 664 .
srip87122 chr4 75642671 75642671 - L1-Ta germline . no 664 .
srip87170 chr4 79032904 79032904 + L1-Ta germline . yes 664 FRAS1
srip87428 chr4 80864880 80864880 + L1-Ta germline . yes 664 ANTXR2
srip87470 chr4 80894074 80894074 + L1-Ta germline . yes 664 ANTXR2
srip88348 chr4 99513572 99513572 - L1-Ta germline . no 664 TSPAN5
srip89281 chr4 107492188 107492188 - L1-Ta germline . no 664 .
srip90015 chr4 113909973 113909973 - L1-Ta germline . no 664 ANK2
srip92309 chr4 136006539 136006539 + L1-Ta germline . no 664 .
srip94462 chr4 170281916 170281916 - L1-Ta germline . no 664 .
srip94521 chr4 170436610 170436610 - L1-Ta germline . no 664 NEK1
srip94568 chr4 172217522 172217522 - L1-Ta germline . no 664 .
srip95111 chr4 182695155 182695155 - L1-Ta germline . no 664 .
srip96859 chr5 20644380 20644380 - L1-Ta germline . no 664 .
srip97790 chr5 33633345 33633345 - L1-Ta germline . no 664 ADAMTS12
srip98139 chr5 34153955 34153955 + L1-Ta germline . yes 664 .
srip98835 chr5 51488295 51488295 - L1-Ta germline . no 664 .
srip101446 chr5 99981611 99981611 + L1-Ta germline . yes 664 .
srip101524 chr5 105483500 105483500 - L1-Ta germline . no 664 .
srip102584 chr5 110474800 110474800 + L1-Ta germline . yes 664 .
srip103447 chr5 132924977 132924977 + L1-Ta germline . yes 664 FSTL4
srip103934 chr5 138420464 138420464 + L1-Ta germline . yes 664 SIL1
srip104263 chr5 144473640 144473640 + L1-Ta germline . no 664 .
srip104885 chr5 155333864 155333864 - L1-Ta germline . no 664 .
srip104927 chr5 155488954 155488954 - L1-Ta germline . yes 664 .
srip105280 chr5 155898952 155898952 - L1-Ta germline . no 664 SGCD
srip105878 chr5 165848548 165848548 + L1-Ta germline . yes 664 .
srip106059 chr5 172829796 172829796 - L1-Ta germline . no 664 .
srip106625 chr6 2418002 2418002 - L1-Ta germline . no 664 .
srip107500 chr6 13503038 13503038 + L1-Ta germline . no 664 .
srip107690 chr6 18910854 18910854 - L1-Ta germline . no 664 .
srip108211 chr6 39645329 39645329 - L1-Ta germline . yes 664 KIF6
srip108787 chr6 50611605 50611605 - L1-Ta germline . no 664 .
srip108875 chr6 55594843 55594843 - L1-Ta germline . no 664 .
srip109851 chr6 66787597 66787597 - L1-Ta germline . no 664 .
srip109893 chr6 67313668 67313668 + L1-Ta germline . yes 664 .
srip110145 chr6 70726265 70726265 + L1-Ta germline . yes 664 COL19A1
srip112018 chr6 91669505 91669505 - L1-Ta germline . no 664 .
srip112930 chr6 113030984 113030984 + L1-Ta germline . no 664 LOC100287612
srip113102 chr6 115899917 115899917 - L1-Ta germline . no 664 .
srip113586 chr6 136712687 136712687 + L1-Ta germline . yes 664 MAP7
srip114834 chr6 153029982 153029982 - L1-Ta germline . no 664 MYCT1
srip114937 chr6 156361300 156361300 + L1-Ta germline . no 664 .
srip116018 chr6 165719986 165719986 + L1-Ta germline . no 664 C6orf118
srip116665 chr7 28783416 28783416 - L1-Ta germline . no 664 CREB5
srip116729 chr7 30484894 30484894 + L1-Ta germline . no 664 NOD1
srip117113 chr7 45733735 45733735 + L1-Ta germline . no 664 ADCY1
srip118334 chr7 64086299 64086299 + L1-Ta germline . no 664 .
srip118574 chr7 69668336 69668336 + L1-Ta germline . yes 664 AUTS2
srip118629 chr7 69828469 69828469 + L1-Ta germline . no 664 AUTS2
srip118943 chr7 75335791 75335791 - L1-Ta germline . no 664 HIP1
srip120767 chr7 93146616 93146616 - L1-Ta germline . no 664 CALCR
srip122080 chr7 109548699 109548699 + L1-Ta germline . no 664 .
srip123015 chr7 129507566 129507566 + L1-Ta germline . no 664 UBE2H
srip123074 chr7 130386823 130386823 - L1-Ta germline . no 664 .
srip123427 chr7 144908831 144908831 + L1-Ta germline . no 664 .
srip124350 chr8 5829277 5829277 - L1-Ta germline . no 664 .
srip124793 chr8 9597567 9597567 + L1-Ta germline . yes 664 TNKS
srip125014 chr8 18768149 18768149 + L1-Ta germline . yes 664 PSD3
srip126391 chr8 58347939 58347939 + L1-Ta germline . no 664 .
srip126983 chr8 71583563 71583563 - L1-Ta germline . no 664 XKR9
srip128514 chr8 97911008 97911008 + L1-Ta germline . yes 664 PGCP
srip128667 chr8 100233000 100233000 - L1-Ta germline . no 664 VPS13B
srip128931 chr8 114072203 114072203 - L1-Ta germline . no 664 CSMD3
srip130117 chr8 131041221 131041221 + L1-Ta germline . no 664 .
srip130416 chr8 137450317 137450317 - L1-Ta germline . yes 664 .
srip131635 chr9 10137698 10137698 + L1-Ta germline . yes 664 PTPRD
srip131905 chr9 28111894 28111894 - L1-Ta germline . yes 664 LINGO2
srip132418 chr9 30674435 30674435 - L1-Ta germline . no 664 .
srip133211 chr9 32463884 32463884 - L1-Ta germline . no 664 DDX58
srip134121 chr9 80014129 80014129 + L1-Ta germline . no 664 VPS13A
srip134588 chr9 98465870 98465870 + L1-Ta germline . yes 664 .
srip134746 chr9 102615582 102615582 - L1-Ta germline . no 664 NR4A3
srip136347 chrX 11731399 11731399 + L1-Ta germline . yes 664 .
srip136965 chrX 45449426 45449426 + L1-Ta germline . no 664 .
srip137023 chrX 49731196 49731196 - L1-Ta germline . no 664 CLCN5
srip137057 chrX 49784005 49784005 - L1-Ta germline . no 664 CLCN5
srip137998 chrX 63233094 63233094 - L1-Ta germline . no 664 .
srip138373 chrX 67263241 67263241 + L1-Ta germline . no 664 OPHN1
srip138487 chrX 72606851 72606851 + L1-Ta germline . no 664 .
srip138748 chrX 75543182 75543182 - L1-Ta germline . no 664 .
srip139341 chrX 85609830 85609830 + L1-Ta germline . yes 664 DACH2
srip139522 chrX 94857127 94857127 + L1-Ta germline . yes 664 .
srip140164 chrX 105718545 105718545 + L1-Ta germline . yes 664 .
srip140562 chrX 117098155 117098155 + L1-Ta germline . yes 664 KLHL13
srip140623 chrX 118569413 118569413 - L1-Ta germline . no 664 SLC25A43
srip140789 chrX 119892835 119892835 - L1-Ta germline . no 664 .
srip140848 chrX 120397638 120397638 - L1-Ta germline . no 664 .
srip141232 chrX 129525220 129525220 - L1-Ta germline . no 664 .
srip141441 chrX 130140534 130140534 + L1-Ta germline . no 664 .
srip142132 chrX 154745667 154745667 - L1-Ta germline . no 664 TMLHE