euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

226 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip190 chr1 31041664 31041664 + L1-Ta germline . no 663 .
srip339 chr1 41201714 41201714 - L1-Ta germline . no 663 NFYC
srip914 chr1 56834937 56834937 + L1-Ta germline . yes 663 .
srip1641 chr1 74984526 74984526 - L1-Ta germline . no 663 FPGT-TNNI3K;TNNI3K
srip2147 chr1 86398798 86398798 + L1-Ta germline . no 663 COL24A1
srip2234 chr1 87144762 87144762 - L1-Ta germline . no 663 .
srip3242 chr1 105386449 105386449 - L1-Ta germline . no 663 .
srip3969 chr1 121478354 121478354 + L1-Ta germline . yes 663 .
srip4090 chr1 149308424 149308424 + L1-Ta germline . no 663 LOC645262
srip4567 chr1 163231881 163231881 - L1-Ta germline . no 663 LOC100505773
srip4832 chr1 166212290 166212290 - L1-Ta germline . yes 663 .
srip5518 chr1 180668321 180668321 - L1-Ta germline . no 663 XPR1
srip6130 chr1 193836827 193836827 + L1-Ta germline . yes 663 .
srip7043 chr1 228058514 228058514 - L1-Ta germline . yes 663 .
srip7605 chr10 5293335 5293335 + L1-Ta germline . yes 663 .
srip8711 chr10 32929792 32929792 - L1-Ta germline . no 663 C10orf68
srip8824 chr10 42527965 42527965 + L1-Ta germline . no 663 .
srip8903 chr10 53192462 53192462 - L1-Ta germline validated no 663 PRKG1
srip8971 chr10 58863547 58863547 - L1-Ta germline . no 663 .
srip10784 chr10 107137008 107137008 - L1-Ta germline . no 663 .
srip11285 chr10 110846814 110846814 + L1-Ta germline . yes 663 .
srip11904 chr10 126983644 126983644 - L1-Ta germline . no 663 .
srip12612 chr11 15995864 15995864 - L1-Ta germline . no 663 SOX6
srip13664 chr11 33670122 33670122 + L1-Ta germline validated no 663 C11orf41
srip14868 chr11 49125628 49125628 - L1-Ta germline . no 663 .
srip17264 chr11 95175423 95175423 + L1-Ta germline . no 663 .
srip17392 chr11 99478828 99478828 + L1-Ta germline . yes 663 CNTN5
srip20296 chr12 14335361 14335361 + L1-Ta germline . yes 663 .
srip20335 chr12 17894177 17894177 - L1-Ta germline . no 663 .
srip22458 chr12 44501995 44501995 - L1-Ta germline . yes 663 TMEM117
srip24965 chr12 86633816 86633816 + L1-Ta germline . yes 663 MGAT4C
srip24977 chr12 87394030 87394030 + L1-Ta germline . no 663 .
srip25289 chr12 98672913 98672913 + L1-Ta germline . yes 663 .
srip25354 chr12 102842494 102842494 + L1-Ta germline . no 663 IGF1
srip26395 chr12 126802939 126802939 - L1-Ta germline . no 663 .
srip26714 chr13 21514913 21514913 - L1-Ta germline . no 663 .
srip27596 chr13 33441812 33441812 - L1-Ta germline . no 663 .
srip28366 chr13 57793451 57793451 - L1-Ta germline . no 663 .
srip28692 chr13 61462318 61462318 - L1-Ta germline . no 663 .
srip29435 chr13 61734484 61734484 + L1-Ta germline . no 663 .
srip32059 chr13 86502081 86502081 + L1-Ta germline . no 663 .
srip32224 chr13 88851194 88851194 - L1-Ta germline . no 663 .
srip32455 chr13 92855881 92855881 + L1-Ta germline . yes 663 GPC5
srip33691 chr13 104704163 104704163 + L1-Ta germline . yes 663 .
srip34332 chr14 20554442 20554442 - L1-Ta germline . no 663 .
srip35329 chr14 30525248 30525248 + L1-Ta germline . no 663 .
srip36403 chr14 41197899 41197899 - L1-Ta germline . no 663 .
srip37021 chr14 48662336 48662336 + L1-Ta germline . no 663 .
srip37100 chr14 52532174 52532174 - L1-Ta germline . no 663 NID2
srip38006 chr14 71020049 71020049 + L1-Ta germline . no 663 .
srip38407 chr14 86149587 86149587 + L1-Ta germline . no 663 .
srip38780 chr14 86952527 86952527 - L1-Ta germline validated no 663 .
srip38892 chr14 95605326 95605326 + L1-Ta germline . no 663 DICER1
srip38918 chr14 97993841 97993841 - L1-Ta germline . no 663 .
srip38938 chr14 104734925 104734925 - L1-Ta germline . no 663 .
srip38978 chr15 20022208 20022208 - L1-Ta germline . no 663 .
srip39097 chr15 24383900 24383900 + L1-Ta germline . yes 663 .
srip41027 chr15 55218226 55218226 - L1-Ta germline . no 663 .
srip41306 chr15 58012013 58012013 - L1-Ta germline . no 663 .
srip42295 chr15 83551535 83551535 - L1-Ta germline . no 663 HOMER2
srip44167 chr16 18832538 18832538 - L1-Ta germline . no 663 SMG1
srip45831 chr16 61079187 61079187 + L1-Ta germline . no 663 .
srip45936 chr16 65729907 65729907 + L1-Ta germline . yes 663 .
srip47236 chr17 28398312 28398312 + L1-Ta germline . no 663 EFCAB5
srip47422 chr17 29659591 29659591 - L1-Ta germline . no 663 NF1
srip47490 chr17 32192799 32192799 + L1-Ta germline . yes 663 ACCN1
srip48711 chr18 5332408 5332408 - L1-Ta germline . no 663 .
srip49520 chr18 30185593 30185593 - L1-Ta germline . no 663 .
srip49732 chr18 34567457 34567457 + L1-Ta germline . yes 663 KIAA1328
srip50777 chr18 51762741 51762741 - L1-Ta germline . no 663 .
srip50866 chr18 58172211 58172211 - L1-Ta germline . no 663 .
srip51049 chr18 59763726 59763726 - L1-Ta germline . no 663 PIGN
srip51128 chr18 61030433 61030433 - L1-Ta germline . no 663 KDSR
srip51216 chr18 63446487 63446487 - L1-Ta germline . no 663 CDH7
srip51284 chr18 68413712 68413712 - L1-Ta germline . no 663 .
srip51357 chr18 69024727 69024727 + L1-Ta germline . yes 663 .
srip54567 chr2 42051402 42051402 + L1-Ta germline . no 663 .
srip55310 chr2 69168903 69168903 - L1-Ta germline . no 663 .
srip55632 chr2 73354355 73354355 - L1-Ta germline . no 663 .
srip55687 chr2 75726168 75726168 + L1-Ta germline . no 663 FAM176A
srip55950 chr2 81834768 81834768 - L1-Ta germline . no 663 .
srip56301 chr2 83068216 83068216 + L1-Ta germline . yes 663 .
srip56992 chr2 108631988 108631988 - L1-Ta germline . no 663 .
srip57330 chr2 116246475 116246475 + L1-Ta germline . no 663 DPP10
srip57397 chr2 118667183 118667183 - L1-Ta germline . no 663 .
srip57778 chr2 130439851 130439851 - L1-Ta germline . no 663 .
srip58355 chr2 142788891 142788891 - L1-Ta germline . no 663 LRP1B
srip58643 chr2 144624534 144624534 + L1-Ta germline . yes 663 .
srip59460 chr2 153864262 153864262 - L1-Ta germline . no 663 .
srip61319 chr2 205631655 205631655 - L1-Ta germline . no 663 PARD3B
srip61750 chr2 214647628 214647628 - L1-Ta germline . no 663 SPAG16
srip61819 chr2 218176494 218176494 + L1-Ta germline . yes 663 DIRC3
srip62698 chr2 239902375 239902375 - L1-Ta germline . no 663 .
srip63291 chr20 12781652 12781652 - L1-Ta germline . no 663 .
srip63678 chr20 19400466 19400466 - L1-Ta germline . no 663 SLC24A3
srip63976 chr20 23412776 23412776 + L1-Ta germline . yes 663 .
srip65892 chr21 19517309 19517309 - L1-Ta germline . no 663 .
srip66521 chr21 24125137 24125137 + L1-Ta germline . yes 663 .
srip67472 chr22 22486374 22486374 - L1-Ta germline . no 663 IGL@
srip68232 chr22 29065287 29065287 + L1-Ta germline . yes 663 TTC28
srip69680 chr3 656444 656444 - L1-Ta germline validated no 663 .
srip69749 chr3 2050178 2050178 + L1-Ta germline . yes 663 .
srip70543 chr3 21234919 21234919 + L1-Ta germline . no 663 .
srip70902 chr3 26439488 26439488 - L1-Ta germline . no 663 .
srip71197 chr3 27135216 27135216 + L1-Ta germline . no 663 .
srip71363 chr3 33554072 33554072 + L1-Ta germline . no 663 CLASP2
srip71675 chr3 37890140 37890140 - L1-Ta germline . no 663 .
srip72115 chr3 46824583 46824583 - L1-Ta germline . no 663 .
srip73349 chr3 59852889 59852889 + L1-Ta germline . no 663 FHIT
srip74514 chr3 80676184 80676184 - L1-Ta germline . no 663 .
srip74972 chr3 83853124 83853124 - L1-Ta germline . no 663 .
srip75815 chr3 86264945 86264945 - L1-Ta germline validated no 663 .
srip76485 chr3 105473860 105473860 - L1-Ta germline . no 663 CBLB
srip76578 chr3 108924737 108924737 + L1-Ta germline . yes 663 .
srip76776 chr3 116084880 116084880 + L1-Ta germline . no 663 LSAMP-AS1;LSAMP
srip76892 chr3 121120741 121120741 + L1-Ta germline . yes 663 STXBP5L
srip77373 chr3 129972765 129972765 + L1-Ta germline . yes 663 COL6A4P2
srip77573 chr3 132664831 132664831 - L1-Ta germline . no 663 .
srip77819 chr3 137073450 137073450 + L1-Ta germline . no 663 .
srip78928 chr3 154632590 154632590 + L1-Ta germline . yes 663 .
srip79223 chr3 158813156 158813156 - L1-Ta germline . yes 663 IQCJ;IQCJ-SCHIP1
srip79863 chr3 169269954 169269954 + L1-Ta germline . no 663 MECOM
srip80319 chr3 176091321 176091321 + L1-Ta germline . no 663 .
srip81600 chr3 187835306 187835306 - L1-Ta germline . no 663 .
srip83297 chr4 19170950 19170950 + L1-Ta germline . no 663 .
srip83604 chr4 26929329 26929329 + L1-Ta germline . no 663 STIM2
srip84560 chr4 46799112 46799112 + L1-Ta germline . yes 663 COX7B2
srip84607 chr4 46883027 46883027 + L1-Ta germline . no 663 .
srip84667 chr4 47007779 47007779 - L1-Ta germline . no 663 .
srip84943 chr4 48416463 48416463 - L1-Ta germline . no 663 SLAIN2
srip85005 chr4 48738022 48738022 + L1-Ta germline . no 663 FRYL
srip85865 chr4 59442445 59442445 - L1-Ta germline . no 663 .
srip87121 chr4 75642671 75642671 - L1-Ta germline . no 663 .
srip87169 chr4 79032904 79032904 + L1-Ta germline . yes 663 FRAS1
srip87427 chr4 80864880 80864880 + L1-Ta germline . yes 663 ANTXR2
srip87469 chr4 80894074 80894074 + L1-Ta germline . yes 663 ANTXR2
srip87759 chr4 85317439 85317439 - L1-Ta germline . no 663 .
srip88347 chr4 99513572 99513572 - L1-Ta germline . no 663 TSPAN5
srip89280 chr4 107492188 107492188 - L1-Ta germline . no 663 .
srip92308 chr4 136006539 136006539 + L1-Ta germline . no 663 .
srip93166 chr4 147543284 147543284 + L1-Ta germline . no 663 .
srip94145 chr4 167369021 167369021 - L1-Ta germline . no 663 .
srip94520 chr4 170436610 170436610 - L1-Ta germline . no 663 NEK1
srip95110 chr4 182695155 182695155 - L1-Ta germline . no 663 .
srip96858 chr5 20644380 20644380 - L1-Ta germline . no 663 .
srip97789 chr5 33633345 33633345 - L1-Ta germline . no 663 ADAMTS12
srip98066 chr5 33797556 33797556 - L1-Ta germline . no 663 ADAMTS12
srip98138 chr5 34153955 34153955 + L1-Ta germline . yes 663 .
srip98834 chr5 51488295 51488295 - L1-Ta germline . no 663 .
srip99181 chr5 64795478 64795478 - L1-Ta germline . no 663 .
srip101445 chr5 99981611 99981611 + L1-Ta germline . yes 663 .
srip101523 chr5 105483500 105483500 - L1-Ta germline . no 663 .
srip102583 chr5 110474800 110474800 + L1-Ta germline . yes 663 .
srip102818 chr5 118941211 118941211 + L1-Ta germline . no 663 .
srip103012 chr5 124907258 124907258 + L1-Ta germline . yes 663 .
srip103933 chr5 138420464 138420464 + L1-Ta germline . yes 663 SIL1
srip104262 chr5 144473640 144473640 + L1-Ta germline . no 663 .
srip104357 chr5 147337963 147337963 - L1-Ta germline . no 663 .
srip104926 chr5 155488954 155488954 - L1-Ta germline . yes 663 .
srip105877 chr5 165848548 165848548 + L1-Ta germline . yes 663 .
srip106058 chr5 172829796 172829796 - L1-Ta germline . no 663 .
srip106624 chr6 2418002 2418002 - L1-Ta germline . no 663 .
srip107499 chr6 13503038 13503038 + L1-Ta germline . no 663 .
srip107689 chr6 18910854 18910854 - L1-Ta germline . no 663 .
srip108210 chr6 39645329 39645329 - L1-Ta germline . yes 663 KIF6
srip108786 chr6 50611605 50611605 - L1-Ta germline . no 663 .
srip108874 chr6 55594843 55594843 - L1-Ta germline . no 663 .
srip109850 chr6 66787597 66787597 - L1-Ta germline . no 663 .
srip109892 chr6 67313668 67313668 + L1-Ta germline . yes 663 .
srip110144 chr6 70726265 70726265 + L1-Ta germline . yes 663 COL19A1
srip110372 chr6 73995229 73995229 - L1-Ta germline . no 663 C6orf147
srip112929 chr6 113030984 113030984 + L1-Ta germline . no 663 LOC100287612
srip113101 chr6 115899917 115899917 - L1-Ta germline . no 663 .
srip113141 chr6 117429369 117429369 + L1-Ta germline . no 663 .
srip113585 chr6 136712687 136712687 + L1-Ta germline . yes 663 MAP7
srip114833 chr6 153029982 153029982 - L1-Ta germline . no 663 MYCT1
srip114936 chr6 156361300 156361300 + L1-Ta germline . no 663 .
srip116664 chr7 28783416 28783416 - L1-Ta germline . no 663 CREB5
srip118573 chr7 69668336 69668336 + L1-Ta germline . yes 663 AUTS2
srip118628 chr7 69828469 69828469 + L1-Ta germline . no 663 AUTS2
srip118942 chr7 75335791 75335791 - L1-Ta germline . no 663 HIP1
srip120766 chr7 93146616 93146616 - L1-Ta germline . no 663 CALCR
srip122331 chr7 111609264 111609264 + L1-Ta germline . yes 663 DOCK4
srip122494 chr7 113139394 113139394 + L1-Ta germline . yes 663 .
srip122962 chr7 127930833 127930833 - L1-Ta germline . no 663 .
srip123014 chr7 129507566 129507566 + L1-Ta germline . no 663 UBE2H
srip123073 chr7 130386823 130386823 - L1-Ta germline . no 663 .
srip123208 chr7 141620449 141620449 - L1-Ta germline . no 663 .
srip123426 chr7 144908831 144908831 + L1-Ta germline . no 663 .
srip123462 chr7 145063368 145063368 + L1-Ta germline . yes 663 .
srip124349 chr8 5829277 5829277 - L1-Ta germline . no 663 .
srip124792 chr8 9597567 9597567 + L1-Ta germline . yes 663 TNKS
srip124957 chr8 18455922 18455922 + L1-Ta germline . yes 663 PSD3
srip125013 chr8 18768149 18768149 + L1-Ta germline . yes 663 PSD3
srip126390 chr8 58347939 58347939 + L1-Ta germline . no 663 .
srip126982 chr8 71583563 71583563 - L1-Ta germline . no 663 XKR9
srip128666 chr8 100233000 100233000 - L1-Ta germline . no 663 VPS13B
srip128930 chr8 114072203 114072203 - L1-Ta germline . no 663 CSMD3
srip130415 chr8 137450317 137450317 - L1-Ta germline . yes 663 .
srip131175 chr9 7426601 7426601 - L1-Ta germline . no 663 .
srip131634 chr9 10137698 10137698 + L1-Ta germline . yes 663 PTPRD
srip133210 chr9 32463884 32463884 - L1-Ta germline . no 663 DDX58
srip134120 chr9 80014129 80014129 + L1-Ta germline . no 663 VPS13A
srip134297 chr9 86065262 86065262 - L1-Ta germline . no 663 FRMD3
srip134380 chr9 92917935 92917935 + L1-Ta germline . yes 663 .
srip134587 chr9 98465870 98465870 + L1-Ta germline . yes 663 .
srip135634 chr9 113185472 113185472 + L1-Ta germline . no 663 SVEP1
srip135648 chr9 113559580 113559580 + L1-Ta germline . no 663 MUSK
srip136346 chrX 11731399 11731399 + L1-Ta germline . yes 663 .
srip136512 chrX 14152010 14152010 - L1-Ta germline validated no 663 .
srip137022 chrX 49731196 49731196 - L1-Ta germline . no 663 CLCN5
srip137056 chrX 49784005 49784005 - L1-Ta germline . no 663 CLCN5
srip137997 chrX 63233094 63233094 - L1-Ta germline . no 663 .
srip138486 chrX 72606851 72606851 + L1-Ta germline . no 663 .
srip139162 chrX 81102668 81102668 + L1-Ta germline . yes 663 .
srip139288 chrX 84028703 84028703 - L1-Ta germline . no 663 .
srip139521 chrX 94857127 94857127 + L1-Ta germline . yes 663 .
srip140163 chrX 105718545 105718545 + L1-Ta germline . yes 663 .
srip140561 chrX 117098155 117098155 + L1-Ta germline . yes 663 KLHL13
srip140622 chrX 118569413 118569413 - L1-Ta germline . no 663 SLC25A43
srip140847 chrX 120397638 120397638 - L1-Ta germline . no 663 .
srip141231 chrX 129525220 129525220 - L1-Ta germline . no 663 .
srip141440 chrX 130140534 130140534 + L1-Ta germline . no 663 .
srip141496 chrX 134162047 134162047 + L1-Ta germline . no 663 .
srip141622 chrX 137146500 137146500 + L1-Ta germline . no 663 .
srip142131 chrX 154745667 154745667 - L1-Ta germline . no 663 TMLHE