euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

230 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip54 chr1 12875996 12875996 - L1-Ta germline . no 660 .
srip189 chr1 31041664 31041664 + L1-Ta germline . no 660 .
srip536 chr1 42483962 42483962 + L1-Ta germline . no 660 HIVEP3
srip911 chr1 56834937 56834937 + L1-Ta germline . yes 660 .
srip1638 chr1 74984526 74984526 - L1-Ta germline . no 660 FPGT-TNNI3K;TNNI3K
srip2144 chr1 86398798 86398798 + L1-Ta germline . no 660 COL24A1
srip2231 chr1 87144762 87144762 - L1-Ta germline . no 660 .
srip3239 chr1 105386449 105386449 - L1-Ta germline . no 660 .
srip3967 chr1 121478354 121478354 + L1-Ta germline . yes 660 .
srip4088 chr1 149308424 149308424 + L1-Ta germline . no 660 LOC645262
srip4283 chr1 158238664 158238664 + L1-Ta germline . yes 660 .
srip4564 chr1 163231881 163231881 - L1-Ta germline . no 660 LOC100505773
srip5245 chr1 176721478 176721478 + L1-Ta germline . yes 660 PAPPA2
srip5869 chr1 192262235 192262235 - L1-Ta germline . no 660 .
srip6476 chr1 218182567 218182567 - L1-Ta germline . no 660 .
srip7602 chr10 5293335 5293335 + L1-Ta germline . yes 660 .
srip7646 chr10 6411577 6411577 - L1-Ta germline . no 660 .
srip8708 chr10 32929792 32929792 - L1-Ta germline . no 660 C10orf68
srip8968 chr10 58863547 58863547 - L1-Ta germline . no 660 .
srip10053 chr10 87121396 87121396 + L1-Ta germline . no 660 .
srip11282 chr10 110846814 110846814 + L1-Ta germline . yes 660 .
srip12532 chr11 15380245 15380245 + L1-Ta germline . no 660 .
srip12702 chr11 24355519 24355519 + L1-Ta germline . yes 660 .
srip13071 chr11 26418548 26418548 + L1-Ta germline . no 660 ANO3
srip13661 chr11 33670122 33670122 + L1-Ta germline validated no 660 C11orf41
srip14842 chr11 48755930 48755930 + L1-Ta germline . no 660 .
srip17262 chr11 95175423 95175423 + L1-Ta germline . no 660 .
srip17389 chr11 99478828 99478828 + L1-Ta germline . yes 660 CNTN5
srip18316 chr11 116865623 116865623 - L1-Ta germline validated no 660 SIK3
srip18405 chr11 122349362 122349362 + L1-Ta germline . no 660 .
srip20293 chr12 14335361 14335361 + L1-Ta germline . yes 660 .
srip20355 chr12 20145182 20145182 + L1-Ta germline validated no 660 .
srip22455 chr12 44501995 44501995 - L1-Ta germline . yes 660 TMEM117
srip23000 chr12 61396241 61396241 - L1-Ta germline . no 660 .
srip23407 chr12 70167057 70167057 - L1-Ta germline . no 660 RAB3IP
srip24963 chr12 86633816 86633816 + L1-Ta germline . yes 660 MGAT4C
srip25286 chr12 98672913 98672913 + L1-Ta germline . yes 660 .
srip27593 chr13 33441812 33441812 - L1-Ta germline . no 660 .
srip28472 chr13 59088395 59088395 + L1-Ta germline . no 660 .
srip30512 chr13 76784704 76784704 - L1-Ta somatic validated no 660 .
srip32056 chr13 86502081 86502081 + L1-Ta germline . no 660 .
srip32221 chr13 88851194 88851194 - L1-Ta germline . no 660 .
srip32452 chr13 92855881 92855881 + L1-Ta germline . yes 660 GPC5
srip33690 chr13 104704163 104704163 + L1-Ta germline . yes 660 .
srip36359 chr14 40098407 40098407 - L1-Ta germline . no 660 .
srip38975 chr15 20022208 20022208 - L1-Ta germline . no 660 .
srip39096 chr15 24383900 24383900 + L1-Ta germline . yes 660 .
srip40779 chr15 51875289 51875289 - L1-Ta germline . no 660 DMXL2
srip40838 chr15 53448042 53448042 - L1-Ta germline . no 660 .
srip43284 chr15 100931158 100931158 - L1-Ta germline . no 660 .
srip43847 chr16 7925421 7925421 + L1-Ta germline . no 660 .
srip44165 chr16 18832538 18832538 - L1-Ta germline . no 660 SMG1
srip47419 chr17 29659591 29659591 - L1-Ta germline . no 660 NF1
srip47487 chr17 32192799 32192799 + L1-Ta germline . yes 660 ACCN1
srip47605 chr17 32813608 32813608 + L1-Ta germline . no 660 .
srip48708 chr18 5332408 5332408 - L1-Ta germline . no 660 .
srip49018 chr18 21903206 21903206 - L1-Ta germline . no 660 OSBPL1A
srip49517 chr18 30185593 30185593 - L1-Ta germline . no 660 .
srip50774 chr18 51762741 51762741 - L1-Ta germline . no 660 .
srip51046 chr18 59763726 59763726 - L1-Ta germline . no 660 PIGN
srip51125 chr18 61030433 61030433 - L1-Ta germline . no 660 KDSR
srip51213 chr18 63446487 63446487 - L1-Ta germline . no 660 CDH7
srip51281 chr18 68413712 68413712 - L1-Ta germline . no 660 .
srip51354 chr18 69024727 69024727 + L1-Ta germline . yes 660 .
srip51399 chr18 69617341 69617341 + L1-Ta germline . no 660 .
srip52398 chr19 43556939 43556939 + L1-Ta germline . no 660 .
srip52499 chr19 55091547 55091547 - L1-Ta germline . no 660 LILRA2
srip54373 chr2 41777137 41777137 - L1-Ta germline . no 660 .
srip55629 chr2 73354355 73354355 - L1-Ta germline . no 660 .
srip55947 chr2 81834768 81834768 - L1-Ta germline . no 660 .
srip56298 chr2 83068216 83068216 + L1-Ta germline . yes 660 .
srip56989 chr2 108631988 108631988 - L1-Ta germline . no 660 .
srip57394 chr2 118667183 118667183 - L1-Ta germline . no 660 .
srip57609 chr2 126510571 126510571 + L1-Ta germline . yes 660 .
srip57775 chr2 130439851 130439851 - L1-Ta germline . no 660 .
srip57964 chr2 139785112 139785112 - L1-Ta germline . no 660 .
srip58352 chr2 142788891 142788891 - L1-Ta germline . no 660 LRP1B
srip58640 chr2 144624534 144624534 + L1-Ta germline . yes 660 .
srip59457 chr2 153864262 153864262 - L1-Ta germline . no 660 .
srip59827 chr2 170111155 170111155 + L1-Ta germline . yes 660 LRP2
srip59931 chr2 176346680 176346680 - L1-Ta germline . no 660 .
srip61316 chr2 205631655 205631655 - L1-Ta germline . no 660 PARD3B
srip61748 chr2 214647628 214647628 - L1-Ta germline . no 660 SPAG16
srip61816 chr2 218176494 218176494 + L1-Ta germline . yes 660 DIRC3
srip62696 chr2 239902375 239902375 - L1-Ta germline . no 660 .
srip63288 chr20 12781652 12781652 - L1-Ta germline . no 660 .
srip63676 chr20 19400466 19400466 - L1-Ta germline . no 660 SLC24A3
srip63973 chr20 23412776 23412776 + L1-Ta germline . yes 660 .
srip64748 chr20 41952103 41952103 - L1-Ta germline . no 660 .
srip65153 chr20 51779972 51779972 - L1-Ta germline . yes 660 TSHZ2
srip65889 chr21 19517309 19517309 - L1-Ta germline . no 660 .
srip66518 chr21 24125137 24125137 + L1-Ta germline . yes 660 .
srip66900 chr21 29069173 29069173 + L1-Ta germline . no 660 .
srip67470 chr22 22486374 22486374 - L1-Ta germline . no 660 IGL@
srip68229 chr22 29065287 29065287 + L1-Ta germline . yes 660 TTC28
srip69677 chr3 656444 656444 - L1-Ta germline validated no 660 .
srip69746 chr3 2050178 2050178 + L1-Ta germline . yes 660 .
srip70841 chr3 25740941 25740941 - L1-Ta germline . no 660 .
srip70899 chr3 26439488 26439488 - L1-Ta germline . no 660 .
srip71360 chr3 33554072 33554072 + L1-Ta germline . no 660 CLASP2
srip71989 chr3 41821477 41821477 + L1-Ta germline . yes 660 ULK4
srip72112 chr3 46824583 46824583 - L1-Ta germline . no 660 .
srip73959 chr3 77812776 77812776 - L1-Ta germline . no 660 .
srip74416 chr3 80590157 80590157 - L1-Ta germline . no 660 .
srip74600 chr3 81770349 81770349 + L1-Ta germline . yes 660 GBE1
srip75571 chr3 85576552 85576552 + L1-Ta germline . no 660 CADM2
srip76387 chr3 103275235 103275235 - L1-Ta germline . no 660 .
srip76482 chr3 105473860 105473860 - L1-Ta germline . no 660 CBLB
srip76575 chr3 108924737 108924737 + L1-Ta germline . yes 660 .
srip76655 chr3 109836400 109836400 - L1-Ta germline . no 660 .
srip76890 chr3 121120741 121120741 + L1-Ta germline . yes 660 STXBP5L
srip77105 chr3 123590712 123590712 + L1-Ta germline validated no 660 MYLK
srip77370 chr3 129972765 129972765 + L1-Ta germline . yes 660 COL6A4P2
srip77429 chr3 130352893 130352893 + L1-Ta germline . yes 660 COL6A6
srip77570 chr3 132664831 132664831 - L1-Ta germline . no 660 .
srip78925 chr3 154632590 154632590 + L1-Ta germline . yes 660 .
srip79959 chr3 172749131 172749131 - L1-Ta germline . no 660 SPATA16
srip80316 chr3 176091321 176091321 + L1-Ta germline . no 660 .
srip80881 chr3 181192904 181192904 + L1-Ta germline . no 660 .
srip80916 chr3 182952475 182952475 - L1-Ta germline . no 660 MCF2L2
srip81597 chr3 187835306 187835306 - L1-Ta germline . no 660 .
srip82631 chr4 15849204 15849204 + L1-Ta germline . no 660 CD38
srip82701 chr4 16950725 16950725 + L1-Ta germline . yes 660 .
srip83294 chr4 19170950 19170950 + L1-Ta germline . no 660 .
srip83601 chr4 26929329 26929329 + L1-Ta germline . no 660 STIM2
srip84557 chr4 46799112 46799112 + L1-Ta germline . yes 660 COX7B2
srip85002 chr4 48738022 48738022 + L1-Ta germline . no 660 FRYL
srip85045 chr4 49057917 49057917 - L1-Ta germline . no 660 CWH43
srip85621 chr4 58888335 58888335 + L1-Ta germline . no 660 .
srip85862 chr4 59442445 59442445 - L1-Ta germline . no 660 .
srip86325 chr4 66809073 66809073 - L1-Ta germline . no 660 .
srip87075 chr4 71200089 71200089 + L1-Ta germline . no 660 .
srip87166 chr4 79032904 79032904 + L1-Ta germline . yes 660 FRAS1
srip87424 chr4 80864880 80864880 + L1-Ta germline . yes 660 ANTXR2
srip87732 chr4 82931377 82931377 + L1-Ta germline . yes 660 .
srip88344 chr4 99513572 99513572 - L1-Ta germline . no 660 TSPAN5
srip90726 chr4 118765260 118765260 + L1-Ta germline . no 660 .
srip90833 chr4 120869874 120869874 - L1-Ta germline . no 660 .
srip91603 chr4 132181657 132181657 - L1-Ta germline . no 660 .
srip92305 chr4 136006539 136006539 + L1-Ta germline . no 660 .
srip93163 chr4 147543284 147543284 + L1-Ta germline . no 660 .
srip94142 chr4 167369021 167369021 - L1-Ta germline . no 660 .
srip94517 chr4 170436610 170436610 - L1-Ta germline . no 660 NEK1
srip94566 chr4 172217522 172217522 - L1-Ta germline . no 660 .
srip95107 chr4 182695155 182695155 - L1-Ta germline . no 660 .
srip95735 chr5 7603653 7603653 - L1-Ta germline . no 660 ADCY2
srip96402 chr5 12197468 12197468 - L1-Ta germline . yes 660 .
srip96855 chr5 20644380 20644380 - L1-Ta germline . no 660 .
srip97786 chr5 33633345 33633345 - L1-Ta germline . no 660 ADAMTS12
srip98136 chr5 34153955 34153955 + L1-Ta germline . yes 660 .
srip101442 chr5 99981611 99981611 + L1-Ta germline . yes 660 .
srip102580 chr5 110474800 110474800 + L1-Ta germline . yes 660 .
srip102815 chr5 118941211 118941211 + L1-Ta germline . no 660 .
srip103445 chr5 132924977 132924977 + L1-Ta germline . yes 660 FSTL4
srip103930 chr5 138420464 138420464 + L1-Ta germline . yes 660 SIL1
srip104260 chr5 144473640 144473640 + L1-Ta germline . no 660 .
srip104354 chr5 147337963 147337963 - L1-Ta germline . no 660 .
srip105313 chr5 157867289 157867289 - L1-Ta germline . no 660 .
srip105544 chr5 159351193 159351193 - L1-Ta germline . no 660 ADRA1B
srip105874 chr5 165848548 165848548 + L1-Ta germline . yes 660 .
srip106055 chr5 172829796 172829796 - L1-Ta germline . no 660 .
srip107686 chr6 18910854 18910854 - L1-Ta germline . no 660 .
srip108207 chr6 39645329 39645329 - L1-Ta germline . yes 660 KIF6
srip108783 chr6 50611605 50611605 - L1-Ta germline . no 660 .
srip108871 chr6 55594843 55594843 - L1-Ta germline . no 660 .
srip109847 chr6 66787597 66787597 - L1-Ta germline . no 660 .
srip110142 chr6 70726265 70726265 + L1-Ta germline . yes 660 COL19A1
srip110369 chr6 73995229 73995229 - L1-Ta germline . no 660 C6orf147
srip110424 chr6 74865444 74865444 - L1-Ta germline . no 660 .
srip111365 chr6 84049691 84049691 + L1-Ta germline . yes 660 ME1
srip112015 chr6 91669505 91669505 - L1-Ta germline . no 660 .
srip112926 chr6 113030984 113030984 + L1-Ta germline . no 660 LOC100287612
srip113098 chr6 115899917 115899917 - L1-Ta germline . no 660 .
srip113170 chr6 121489953 121489953 + L1-Ta germline . no 660 C6orf170
srip113582 chr6 136712687 136712687 + L1-Ta germline . yes 660 MAP7
srip113839 chr6 142450109 142450109 - L1-Ta germline . no 660 .
srip114897 chr6 154584580 154584580 - L1-Ta germline . no 660 IPCEF1
srip116537 chr7 25081462 25081462 - L1-Ta germline . no 660 .
srip116661 chr7 28783416 28783416 - L1-Ta germline . no 660 CREB5
srip116726 chr7 30484894 30484894 + L1-Ta germline . no 660 NOD1
srip116790 chr7 33561353 33561353 - L1-Ta germline . no 660 BBS9
srip117147 chr7 46350337 46350337 - L1-Ta germline . no 660 .
srip117197 chr7 49191619 49191619 + L1-Ta germline . no 660 .
srip118570 chr7 69668336 69668336 + L1-Ta germline . yes 660 AUTS2
srip118625 chr7 69828469 69828469 + L1-Ta germline . no 660 AUTS2
srip121445 chr7 107829247 107829247 + L1-Ta germline . no 660 NRCAM
srip122077 chr7 109548699 109548699 + L1-Ta germline . no 660 .
srip122492 chr7 113139394 113139394 + L1-Ta germline . yes 660 .
srip123011 chr7 129507566 129507566 + L1-Ta germline . no 660 UBE2H
srip123070 chr7 130386823 130386823 - L1-Ta germline . no 660 .
srip123205 chr7 141620449 141620449 - L1-Ta germline . no 660 .
srip123459 chr7 145063368 145063368 + L1-Ta germline . yes 660 .
srip123675 chr7 147539649 147539649 - L1-Ta germline . no 660 CNTNAP2
srip124789 chr8 9597567 9597567 + L1-Ta germline . yes 660 TNKS
srip125010 chr8 18768149 18768149 + L1-Ta germline . yes 660 PSD3
srip127466 chr8 73787772 73787772 - L1-Ta germline . no 660 KCNB2
srip128511 chr8 97911008 97911008 + L1-Ta germline . yes 660 PGCP
srip128663 chr8 100233000 100233000 - L1-Ta germline . no 660 VPS13B
srip128927 chr8 114072203 114072203 - L1-Ta germline . no 660 CSMD3
srip130414 chr8 137450317 137450317 - L1-Ta germline . yes 660 .
srip130511 chr9 1337904 1337904 - L1-Ta germline . no 660 .
srip131102 chr9 6290488 6290488 + L1-Ta germline . no 660 .
srip131632 chr9 10137698 10137698 + L1-Ta germline . yes 660 PTPRD
srip131679 chr9 12556845 12556845 - L1-Ta germline . no 660 .
srip133207 chr9 32463884 32463884 - L1-Ta germline . no 660 DDX58
srip134117 chr9 80014129 80014129 + L1-Ta germline . no 660 VPS13A
srip134249 chr9 82866814 82866814 + L1-Ta germline . no 660 .
srip134294 chr9 86065262 86065262 - L1-Ta germline . no 660 FRMD3
srip134584 chr9 98465870 98465870 + L1-Ta germline . yes 660 .
srip134801 chr9 103749297 103749297 + L1-Ta germline . no 660 .
srip136511 chrX 14152010 14152010 - L1-Ta germline validated no 660 .
srip136963 chrX 45449426 45449426 + L1-Ta germline . no 660 .
srip137019 chrX 49731196 49731196 - L1-Ta germline . no 660 CLCN5
srip137054 chrX 49784005 49784005 - L1-Ta germline . no 660 CLCN5
srip137994 chrX 63233094 63233094 - L1-Ta germline . no 660 .
srip138288 chrX 64430988 64430988 + L1-Ta germline . no 660 .
srip138370 chrX 67263241 67263241 + L1-Ta germline . no 660 OPHN1
srip138483 chrX 72606851 72606851 + L1-Ta germline . no 660 .
srip138745 chrX 75543182 75543182 - L1-Ta germline . no 660 .
srip139034 chrX 75949601 75949601 + L1-Ta germline . no 660 .
srip139340 chrX 85609830 85609830 + L1-Ta germline . yes 660 DACH2
srip139518 chrX 94857127 94857127 + L1-Ta germline . yes 660 .
srip139764 chrX 98264296 98264296 - L1-Ta germline validated no 660 .
srip140161 chrX 105718545 105718545 + L1-Ta germline . yes 660 .
srip140619 chrX 118569413 118569413 - L1-Ta germline . no 660 SLC25A43
srip140787 chrX 119892835 119892835 - L1-Ta germline . no 660 .
srip140844 chrX 120397638 120397638 - L1-Ta germline . no 660 .
srip141228 chrX 129525220 129525220 - L1-Ta germline . no 660 .
srip141619 chrX 137146500 137146500 + L1-Ta germline . no 660 .
srip142129 chrX 154745667 154745667 - L1-Ta germline . no 660 TMLHE