euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

228 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip53 chr1 12875996 12875996 - L1-Ta germline . no 659 .
srip188 chr1 31041664 31041664 + L1-Ta germline . no 659 .
srip364 chr1 41674113 41674113 + L1-Ta germline . yes 659 SCMH1
srip1637 chr1 74984526 74984526 - L1-Ta germline . no 659 FPGT-TNNI3K;TNNI3K
srip2143 chr1 86398798 86398798 + L1-Ta germline . no 659 COL24A1
srip2230 chr1 87144762 87144762 - L1-Ta germline . no 659 .
srip2586 chr1 99678977 99678977 - L1-Ta germline . no 659 .
srip2639 chr1 99854086 99854086 - L1-Ta germline . no 659 .
srip3238 chr1 105386449 105386449 - L1-Ta germline . no 659 .
srip3966 chr1 121478354 121478354 + L1-Ta germline . yes 659 .
srip4196 chr1 152462236 152462236 - L1-Ta germline . no 659 .
srip4282 chr1 158238664 158238664 + L1-Ta germline . yes 659 .
srip4563 chr1 163231881 163231881 - L1-Ta germline . no 659 LOC100505773
srip4796 chr1 165940104 165940104 - L1-Ta germline . yes 659 .
srip5825 chr1 192072266 192072266 - L1-Ta germline . no 659 .
srip5868 chr1 192262235 192262235 - L1-Ta germline . no 659 .
srip6127 chr1 193836827 193836827 + L1-Ta germline . yes 659 .
srip6475 chr1 218182567 218182567 - L1-Ta germline . no 659 .
srip6502 chr1 218246475 218246475 + L1-Ta germline . yes 659 .
srip7040 chr1 228058514 228058514 - L1-Ta germline . yes 659 .
srip7645 chr10 6411577 6411577 - L1-Ta germline . no 659 .
srip8707 chr10 32929792 32929792 - L1-Ta germline . no 659 C10orf68
srip8967 chr10 58863547 58863547 - L1-Ta germline . no 659 .
srip10781 chr10 107137008 107137008 - L1-Ta germline . no 659 .
srip11281 chr10 110846814 110846814 + L1-Ta germline . yes 659 .
srip12701 chr11 24355519 24355519 + L1-Ta germline . yes 659 .
srip13070 chr11 26418548 26418548 + L1-Ta germline . no 659 ANO3
srip13660 chr11 33670122 33670122 + L1-Ta germline validated no 659 C11orf41
srip14841 chr11 48755930 48755930 + L1-Ta germline . no 659 .
srip15522 chr11 59815986 59815986 - L1-Ta germline . no 659 .
srip16779 chr11 87051059 87051059 - L1-Ta germline . no 659 .
srip17228 chr11 94684419 94684419 + L1-Ta germline . no 659 .
srip17261 chr11 95175423 95175423 + L1-Ta germline . no 659 .
srip17388 chr11 99478828 99478828 + L1-Ta germline . yes 659 CNTN5
srip17844 chr11 109048060 109048060 - L1-Ta germline . no 659 .
srip20292 chr12 14335361 14335361 + L1-Ta germline . yes 659 .
srip20353 chr12 19920161 19920161 + L1-Ta germline . no 659 .
srip21922 chr12 42238062 42238062 - L1-Ta germline . no 659 .
srip22454 chr12 44501995 44501995 - L1-Ta germline . yes 659 TMEM117
srip23406 chr12 70167057 70167057 - L1-Ta germline . no 659 RAB3IP
srip24049 chr12 79570815 79570815 - L1-Ta germline . no 659 SYT1
srip25285 chr12 98672913 98672913 + L1-Ta germline . yes 659 .
srip27592 chr13 33441812 33441812 - L1-Ta germline . no 659 .
srip28363 chr13 57793451 57793451 - L1-Ta germline . no 659 .
srip28471 chr13 59088395 59088395 + L1-Ta germline . no 659 .
srip30324 chr13 72968674 72968674 + L1-Ta germline . no 659 .
srip30521 chr13 77186902 77186902 - L1-Ta germline . no 659 .
srip32055 chr13 86502081 86502081 + L1-Ta germline . no 659 .
srip32220 chr13 88851194 88851194 - L1-Ta germline . no 659 .
srip32451 chr13 92855881 92855881 + L1-Ta germline . yes 659 GPC5
srip33689 chr13 104704163 104704163 + L1-Ta germline . yes 659 .
srip36333 chr14 39875096 39875096 + L1-Ta germline validated no 659 FBXO33
srip36785 chr14 45945957 45945957 - L1-Ta germline . no 659 .
srip37019 chr14 48662336 48662336 + L1-Ta germline . no 659 .
srip38889 chr14 95605326 95605326 + L1-Ta germline . no 659 DICER1
srip38974 chr15 20022208 20022208 - L1-Ta germline . no 659 .
srip39942 chr15 47290144 47290144 - L1-Ta germline . no 659 .
srip40778 chr15 51875289 51875289 - L1-Ta germline . no 659 DMXL2
srip40837 chr15 53448042 53448042 - L1-Ta germline . no 659 .
srip41303 chr15 58012013 58012013 - L1-Ta germline . no 659 .
srip41742 chr15 62308185 62308185 + L1-Ta germline . no 659 VPS13C
srip41800 chr15 71027483 71027483 + L1-Ta germline . yes 659 UACA
srip43846 chr16 7925421 7925421 + L1-Ta germline . no 659 .
srip44164 chr16 18832538 18832538 - L1-Ta germline . no 659 SMG1
srip45795 chr16 60913935 60913935 + L1-Ta germline . no 659 .
srip45828 chr16 61079187 61079187 + L1-Ta germline . no 659 .
srip47418 chr17 29659591 29659591 - L1-Ta germline . no 659 NF1
srip47486 chr17 32192799 32192799 + L1-Ta germline . yes 659 ACCN1
srip48707 chr18 5332408 5332408 - L1-Ta germline . no 659 .
srip49730 chr18 34567457 34567457 + L1-Ta germline . yes 659 KIAA1328
srip50773 chr18 51762741 51762741 - L1-Ta germline . no 659 .
srip50864 chr18 58172211 58172211 - L1-Ta germline . no 659 .
srip51045 chr18 59763726 59763726 - L1-Ta germline . no 659 PIGN
srip51124 chr18 61030433 61030433 - L1-Ta germline . no 659 KDSR
srip51353 chr18 69024727 69024727 + L1-Ta germline . yes 659 .
srip51398 chr18 69617341 69617341 + L1-Ta germline . no 659 .
srip52498 chr19 55091547 55091547 - L1-Ta germline . no 659 LILRA2
srip54372 chr2 41777137 41777137 - L1-Ta germline . no 659 .
srip56297 chr2 83068216 83068216 + L1-Ta germline . yes 659 .
srip56988 chr2 108631988 108631988 - L1-Ta germline . no 659 .
srip57328 chr2 116246475 116246475 + L1-Ta germline . no 659 DPP10
srip57393 chr2 118667183 118667183 - L1-Ta germline . no 659 .
srip57608 chr2 126510571 126510571 + L1-Ta germline . yes 659 .
srip57774 chr2 130439851 130439851 - L1-Ta germline . no 659 .
srip57963 chr2 139785112 139785112 - L1-Ta germline . no 659 .
srip58351 chr2 142788891 142788891 - L1-Ta germline . no 659 LRP1B
srip58639 chr2 144624534 144624534 + L1-Ta germline . yes 659 .
srip59456 chr2 153864262 153864262 - L1-Ta germline . no 659 .
srip59730 chr2 168735370 168735370 - L1-Ta germline validated no 659 .
srip59826 chr2 170111155 170111155 + L1-Ta germline . yes 659 LRP2
srip59930 chr2 176346680 176346680 - L1-Ta germline . no 659 .
srip61315 chr2 205631655 205631655 - L1-Ta germline . no 659 PARD3B
srip61747 chr2 214647628 214647628 - L1-Ta germline . no 659 SPAG16
srip61815 chr2 218176494 218176494 + L1-Ta germline . yes 659 DIRC3
srip62695 chr2 239902375 239902375 - L1-Ta germline . no 659 .
srip63254 chr20 11619480 11619480 + L1-Ta germline . no 659 .
srip63287 chr20 12781652 12781652 - L1-Ta germline . no 659 .
srip63972 chr20 23412776 23412776 + L1-Ta germline . yes 659 .
srip64747 chr20 41952103 41952103 - L1-Ta germline . no 659 .
srip66069 chr21 20381800 20381800 + L1-Ta germline . no 659 .
srip66517 chr21 24125137 24125137 + L1-Ta germline . yes 659 .
srip66899 chr21 29069173 29069173 + L1-Ta germline . no 659 .
srip68228 chr22 29065287 29065287 + L1-Ta germline . yes 659 TTC28
srip69676 chr3 656444 656444 - L1-Ta germline validated no 659 .
srip69745 chr3 2050178 2050178 + L1-Ta germline . yes 659 .
srip70898 chr3 26439488 26439488 - L1-Ta germline . no 659 .
srip71195 chr3 27135216 27135216 + L1-Ta germline . no 659 .
srip71359 chr3 33554072 33554072 + L1-Ta germline . no 659 CLASP2
srip72111 chr3 46824583 46824583 - L1-Ta germline . no 659 .
srip74599 chr3 81770349 81770349 + L1-Ta germline . yes 659 GBE1
srip75951 chr3 90389460 90389460 + L1-Ta germline . no 659 .
srip76386 chr3 103275235 103275235 - L1-Ta germline . no 659 .
srip76481 chr3 105473860 105473860 - L1-Ta germline . no 659 CBLB
srip76574 chr3 108924737 108924737 + L1-Ta germline . yes 659 .
srip76654 chr3 109836400 109836400 - L1-Ta germline . no 659 .
srip76774 chr3 116084880 116084880 + L1-Ta germline . no 659 LSAMP-AS1;LSAMP
srip77104 chr3 123590712 123590712 + L1-Ta germline validated no 659 MYLK
srip77369 chr3 129972765 129972765 + L1-Ta germline . yes 659 COL6A4P2
srip77428 chr3 130352893 130352893 + L1-Ta germline . yes 659 COL6A6
srip78856 chr3 152311594 152311594 - L1-Ta germline . no 659 .
srip78924 chr3 154632590 154632590 + L1-Ta germline . yes 659 .
srip79220 chr3 158813156 158813156 - L1-Ta germline . yes 659 IQCJ;IQCJ-SCHIP1
srip79958 chr3 172749131 172749131 - L1-Ta germline . no 659 SPATA16
srip80315 chr3 176091321 176091321 + L1-Ta germline . no 659 .
srip80880 chr3 181192904 181192904 + L1-Ta germline . no 659 .
srip80915 chr3 182952475 182952475 - L1-Ta germline . no 659 MCF2L2
srip82700 chr4 16950725 16950725 + L1-Ta germline . yes 659 .
srip83115 chr4 18162689 18162689 - L1-Ta germline . no 659 .
srip83293 chr4 19170950 19170950 + L1-Ta germline . no 659 .
srip83600 chr4 26929329 26929329 + L1-Ta germline . no 659 STIM2
srip84525 chr4 46058194 46058194 + L1-Ta germline . no 659 GABRG1
srip84556 chr4 46799112 46799112 + L1-Ta germline . yes 659 COX7B2
srip84605 chr4 46883027 46883027 + L1-Ta germline . no 659 .
srip84940 chr4 48416463 48416463 - L1-Ta germline . no 659 SLAIN2
srip85001 chr4 48738022 48738022 + L1-Ta germline . no 659 FRYL
srip85044 chr4 49057917 49057917 - L1-Ta germline . no 659 CWH43
srip86324 chr4 66809073 66809073 - L1-Ta germline . no 659 .
srip87074 chr4 71200089 71200089 + L1-Ta germline . no 659 .
srip87165 chr4 79032904 79032904 + L1-Ta germline . yes 659 FRAS1
srip87423 chr4 80864880 80864880 + L1-Ta germline . yes 659 ANTXR2
srip87731 chr4 82931377 82931377 + L1-Ta germline . yes 659 .
srip88343 chr4 99513572 99513572 - L1-Ta germline . no 659 TSPAN5
srip89278 chr4 107492188 107492188 - L1-Ta germline . no 659 .
srip90321 chr4 115132696 115132696 + L1-Ta germline . no 659 .
srip90725 chr4 118765260 118765260 + L1-Ta germline . no 659 .
srip91173 chr4 127596258 127596258 + L1-Ta germline . no 659 .
srip94141 chr4 167369021 167369021 - L1-Ta germline . no 659 .
srip94459 chr4 170281916 170281916 - L1-Ta germline . no 659 .
srip94516 chr4 170436610 170436610 - L1-Ta germline . no 659 NEK1
srip94565 chr4 172217522 172217522 - L1-Ta germline . no 659 .
srip95106 chr4 182695155 182695155 - L1-Ta germline . no 659 .
srip96401 chr5 12197468 12197468 - L1-Ta germline . yes 659 .
srip96854 chr5 20644380 20644380 - L1-Ta germline . no 659 .
srip98135 chr5 34153955 34153955 + L1-Ta germline . yes 659 .
srip99530 chr5 68263470 68263470 - L1-Ta germline . no 659 .
srip101441 chr5 99981611 99981611 + L1-Ta germline . yes 659 .
srip101521 chr5 105483500 105483500 - L1-Ta germline . no 659 .
srip102579 chr5 110474800 110474800 + L1-Ta germline . yes 659 .
srip102622 chr5 110643939 110643939 + L1-Ta germline . yes 659 CAMK4
srip103292 chr5 125040040 125040040 + L1-Ta germline . no 659 .
srip103444 chr5 132924977 132924977 + L1-Ta germline . yes 659 FSTL4
srip103929 chr5 138420464 138420464 + L1-Ta germline . yes 659 SIL1
srip104259 chr5 144473640 144473640 + L1-Ta germline . no 659 .
srip104353 chr5 147337963 147337963 - L1-Ta germline . no 659 .
srip105312 chr5 157867289 157867289 - L1-Ta germline . no 659 .
srip105543 chr5 159351193 159351193 - L1-Ta germline . no 659 ADRA1B
srip106054 chr5 172829796 172829796 - L1-Ta germline . no 659 .
srip108206 chr6 39645329 39645329 - L1-Ta germline . yes 659 KIF6
srip108782 chr6 50611605 50611605 - L1-Ta germline . no 659 .
srip108870 chr6 55594843 55594843 - L1-Ta germline . no 659 .
srip110141 chr6 70726265 70726265 + L1-Ta germline . yes 659 COL19A1
srip110423 chr6 74865444 74865444 - L1-Ta germline . no 659 .
srip112014 chr6 91669505 91669505 - L1-Ta germline . no 659 .
srip113169 chr6 121489953 121489953 + L1-Ta germline . no 659 C6orf170
srip113581 chr6 136712687 136712687 + L1-Ta germline . yes 659 MAP7
srip114620 chr6 148195788 148195788 + L1-Ta germline . no 659 .
srip115750 chr6 162404960 162404960 + L1-Ta germline . no 659 PARK2
srip116536 chr7 25081462 25081462 - L1-Ta germline . no 659 .
srip116660 chr7 28783416 28783416 - L1-Ta germline . no 659 CREB5
srip116789 chr7 33561353 33561353 - L1-Ta germline . no 659 BBS9
srip117111 chr7 45733735 45733735 + L1-Ta germline . no 659 ADCY1
srip118569 chr7 69668336 69668336 + L1-Ta germline . yes 659 AUTS2
srip118624 chr7 69828469 69828469 + L1-Ta germline . no 659 AUTS2
srip118940 chr7 75335791 75335791 - L1-Ta germline . no 659 HIP1
srip121444 chr7 107829247 107829247 + L1-Ta germline . no 659 NRCAM
srip122076 chr7 109548699 109548699 + L1-Ta germline . no 659 .
srip122329 chr7 111609264 111609264 + L1-Ta germline . yes 659 DOCK4
srip122491 chr7 113139394 113139394 + L1-Ta germline . yes 659 .
srip123010 chr7 129507566 129507566 + L1-Ta germline . no 659 UBE2H
srip123069 chr7 130386823 130386823 - L1-Ta germline . no 659 .
srip123204 chr7 141620449 141620449 - L1-Ta germline . no 659 .
srip123458 chr7 145063368 145063368 + L1-Ta germline . yes 659 .
srip123674 chr7 147539649 147539649 - L1-Ta germline . no 659 CNTNAP2
srip124788 chr8 9597567 9597567 + L1-Ta germline . yes 659 TNKS
srip125009 chr8 18768149 18768149 + L1-Ta germline . yes 659 PSD3
srip128926 chr8 114072203 114072203 - L1-Ta germline . no 659 CSMD3
srip130413 chr8 137450317 137450317 - L1-Ta germline . yes 659 .
srip131631 chr9 10137698 10137698 + L1-Ta germline . yes 659 PTPRD
srip131678 chr9 12556845 12556845 - L1-Ta germline . no 659 .
srip131902 chr9 28111894 28111894 - L1-Ta germline . yes 659 LINGO2
srip133206 chr9 32463884 32463884 - L1-Ta germline . no 659 DDX58
srip134116 chr9 80014129 80014129 + L1-Ta germline . no 659 VPS13A
srip134293 chr9 86065262 86065262 - L1-Ta germline . no 659 FRMD3
srip134377 chr9 92917935 92917935 + L1-Ta germline . yes 659 .
srip134583 chr9 98465870 98465870 + L1-Ta germline . yes 659 .
srip134743 chr9 102615582 102615582 - L1-Ta germline . no 659 NR4A3
srip134800 chr9 103749297 103749297 + L1-Ta germline . no 659 .
srip136343 chrX 11731399 11731399 + L1-Ta germline . yes 659 .
srip136510 chrX 14152010 14152010 - L1-Ta germline validated no 659 .
srip136962 chrX 45449426 45449426 + L1-Ta germline . no 659 .
srip137018 chrX 49731196 49731196 - L1-Ta germline . no 659 CLCN5
srip137993 chrX 63233094 63233094 - L1-Ta germline . no 659 .
srip138369 chrX 67263241 67263241 + L1-Ta germline . no 659 OPHN1
srip138482 chrX 72606851 72606851 + L1-Ta germline . no 659 .
srip138744 chrX 75543182 75543182 - L1-Ta germline . no 659 .
srip139033 chrX 75949601 75949601 + L1-Ta germline . no 659 .
srip139287 chrX 84028703 84028703 - L1-Ta germline . no 659 .
srip139339 chrX 85609830 85609830 + L1-Ta germline . yes 659 DACH2
srip140160 chrX 105718545 105718545 + L1-Ta germline . yes 659 .
srip140559 chrX 117098155 117098155 + L1-Ta germline . yes 659 KLHL13
srip140618 chrX 118569413 118569413 - L1-Ta germline . no 659 SLC25A43
srip140786 chrX 119892835 119892835 - L1-Ta germline . no 659 .
srip140843 chrX 120397638 120397638 - L1-Ta germline . no 659 .
srip141045 chrX 122664652 122664652 - L1-Ta germline . no 659 .
srip141227 chrX 129525220 129525220 - L1-Ta germline . no 659 .
srip141438 chrX 130140534 130140534 + L1-Ta germline . no 659 .
srip141618 chrX 137146500 137146500 + L1-Ta germline . no 659 .
srip142128 chrX 154745667 154745667 - L1-Ta germline . no 659 TMLHE