euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

225 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip187 chr1 31041664 31041664 + L1-Ta germline . no 658 .
srip336 chr1 41201714 41201714 - L1-Ta germline . no 658 NFYC
srip910 chr1 56834937 56834937 + L1-Ta germline . yes 658 .
srip1224 chr1 67544154 67544154 - L1-Ta germline . no 658 .
srip1636 chr1 74984526 74984526 - L1-Ta germline . no 658 FPGT-TNNI3K;TNNI3K
srip2142 chr1 86398798 86398798 + L1-Ta germline . no 658 COL24A1
srip2229 chr1 87144762 87144762 - L1-Ta germline . no 658 .
srip2585 chr1 99678977 99678977 - L1-Ta germline . no 658 .
srip2638 chr1 99854086 99854086 - L1-Ta germline . no 658 .
srip3237 chr1 105386449 105386449 - L1-Ta germline . no 658 .
srip3965 chr1 121478354 121478354 + L1-Ta germline . yes 658 .
srip4195 chr1 152462236 152462236 - L1-Ta germline . no 658 .
srip4281 chr1 158238664 158238664 + L1-Ta germline . yes 658 .
srip4562 chr1 163231881 163231881 - L1-Ta germline . no 658 LOC100505773
srip4795 chr1 165940104 165940104 - L1-Ta germline . yes 658 .
srip4831 chr1 166212290 166212290 - L1-Ta germline . yes 658 .
srip6427 chr1 217214978 217214978 - L1-Ta germline validated no 658 ESRRG
srip6474 chr1 218182567 218182567 - L1-Ta germline . no 658 .
srip7039 chr1 228058514 228058514 - L1-Ta germline . yes 658 .
srip7601 chr10 5293335 5293335 + L1-Ta germline . yes 658 .
srip8706 chr10 32929792 32929792 - L1-Ta germline . no 658 C10orf68
srip8750 chr10 33799704 33799704 - L1-Ta germline . no 658 .
srip8823 chr10 42527965 42527965 + L1-Ta germline . no 658 .
srip8966 chr10 58863547 58863547 - L1-Ta germline . no 658 .
srip9714 chr10 78351510 78351510 + L1-Ta germline . yes 658 .
srip10780 chr10 107137008 107137008 - L1-Ta germline . no 658 .
srip11280 chr10 110846814 110846814 + L1-Ta germline . yes 658 .
srip12609 chr11 15995864 15995864 - L1-Ta germline . no 658 SOX6
srip12700 chr11 24355519 24355519 + L1-Ta germline . yes 658 .
srip13659 chr11 33670122 33670122 + L1-Ta germline validated no 658 C11orf41
srip14840 chr11 48755930 48755930 + L1-Ta germline . no 658 .
srip17227 chr11 94684419 94684419 + L1-Ta germline . no 658 .
srip17387 chr11 99478828 99478828 + L1-Ta germline . yes 658 CNTN5
srip20291 chr12 14335361 14335361 + L1-Ta germline . yes 658 .
srip22453 chr12 44501995 44501995 - L1-Ta germline . yes 658 TMEM117
srip23405 chr12 70167057 70167057 - L1-Ta germline . no 658 RAB3IP
srip24048 chr12 79570815 79570815 - L1-Ta germline . no 658 SYT1
srip25284 chr12 98672913 98672913 + L1-Ta germline . yes 658 .
srip26394 chr12 126802939 126802939 - L1-Ta germline . no 658 .
srip27591 chr13 33441812 33441812 - L1-Ta germline . no 658 .
srip28470 chr13 59088395 59088395 + L1-Ta germline . no 658 .
srip29434 chr13 61734484 61734484 + L1-Ta germline . no 658 .
srip32054 chr13 86502081 86502081 + L1-Ta germline . no 658 .
srip32219 chr13 88851194 88851194 - L1-Ta germline . no 658 .
srip32450 chr13 92855881 92855881 + L1-Ta germline . yes 658 GPC5
srip34330 chr14 20554442 20554442 - L1-Ta germline . no 658 .
srip34484 chr14 26006660 26006660 - L1-Ta somatic validated no 658 .
srip35328 chr14 30525248 30525248 + L1-Ta germline . no 658 .
srip37099 chr14 52532174 52532174 - L1-Ta germline . no 658 NID2
srip37663 chr14 66153406 66153406 + L1-Ta somatic validated no 658 FUT8
srip38003 chr14 71020049 71020049 + L1-Ta germline . no 658 .
srip38888 chr14 95605326 95605326 + L1-Ta germline . no 658 DICER1
srip38973 chr15 20022208 20022208 - L1-Ta germline . no 658 .
srip40777 chr15 51875289 51875289 - L1-Ta germline . no 658 DMXL2
srip40836 chr15 53448042 53448042 - L1-Ta germline . no 658 .
srip41302 chr15 58012013 58012013 - L1-Ta germline . no 658 .
srip41799 chr15 71027483 71027483 + L1-Ta germline . yes 658 UACA
srip42293 chr15 83551535 83551535 - L1-Ta germline . no 658 HOMER2
srip45933 chr16 65729907 65729907 + L1-Ta germline . yes 658 .
srip47485 chr17 32192799 32192799 + L1-Ta germline . yes 658 ACCN1
srip48706 chr18 5332408 5332408 - L1-Ta germline . no 658 .
srip49048 chr18 23067399 23067399 + L1-Ta germline . no 658 .
srip49516 chr18 30185593 30185593 - L1-Ta germline . no 658 .
srip50772 chr18 51762741 51762741 - L1-Ta germline . no 658 .
srip51123 chr18 61030433 61030433 - L1-Ta germline . no 658 KDSR
srip51212 chr18 63446487 63446487 - L1-Ta germline . no 658 CDH7
srip51352 chr18 69024727 69024727 + L1-Ta germline . yes 658 .
srip52497 chr19 55091547 55091547 - L1-Ta germline . no 658 LILRA2
srip52555 chr2 988745 988745 - L1-Ta germline . no 658 SNTG2
srip53596 chr2 23191016 23191016 - L1-Ta germline . no 658 .
srip54564 chr2 42051402 42051402 + L1-Ta germline . no 658 .
srip55628 chr2 73354355 73354355 - L1-Ta germline . no 658 .
srip56296 chr2 83068216 83068216 + L1-Ta germline . yes 658 .
srip56569 chr2 88206937 88206937 + L1-Ta germline . yes 658 .
srip56987 chr2 108631988 108631988 - L1-Ta germline . no 658 .
srip57327 chr2 116246475 116246475 + L1-Ta germline . no 658 DPP10
srip57392 chr2 118667183 118667183 - L1-Ta germline . no 658 .
srip57607 chr2 126510571 126510571 + L1-Ta germline . yes 658 .
srip58350 chr2 142788891 142788891 - L1-Ta germline . no 658 LRP1B
srip59455 chr2 153864262 153864262 - L1-Ta germline . no 658 .
srip60765 chr2 191478703 191478703 - L1-Ta germline . no 658 .
srip61314 chr2 205631655 205631655 - L1-Ta germline . no 658 PARD3B
srip61746 chr2 214647628 214647628 - L1-Ta germline . no 658 SPAG16
srip61814 chr2 218176494 218176494 + L1-Ta germline . yes 658 DIRC3
srip62601 chr2 235519794 235519794 + L1-Ta germline . no 658 .
srip63286 chr20 12781652 12781652 - L1-Ta germline . no 658 .
srip63675 chr20 19400466 19400466 - L1-Ta germline . no 658 SLC24A3
srip63971 chr20 23412776 23412776 + L1-Ta germline . yes 658 .
srip64746 chr20 41952103 41952103 - L1-Ta germline . no 658 .
srip66516 chr21 24125137 24125137 + L1-Ta germline . yes 658 .
srip66898 chr21 29069173 29069173 + L1-Ta germline . no 658 .
srip68227 chr22 29065287 29065287 + L1-Ta germline . yes 658 TTC28
srip69675 chr3 656444 656444 - L1-Ta germline validated no 658 .
srip69866 chr3 4080917 4080917 - L1-Ta germline . yes 658 .
srip70636 chr3 22097802 22097802 + L1-Ta germline . no 658 LOC100505836
srip70840 chr3 25740941 25740941 - L1-Ta germline . no 658 .
srip70897 chr3 26439488 26439488 - L1-Ta germline . no 658 .
srip71194 chr3 27135216 27135216 + L1-Ta germline . no 658 .
srip71358 chr3 33554072 33554072 + L1-Ta germline . no 658 CLASP2
srip72110 chr3 46824583 46824583 - L1-Ta germline . no 658 .
srip72849 chr3 58784127 58784127 + L1-Ta germline validated no 658 C3orf67
srip73347 chr3 59852889 59852889 + L1-Ta germline . no 658 FHIT
srip74598 chr3 81770349 81770349 + L1-Ta germline . yes 658 GBE1
srip74990 chr3 84433383 84433383 + L1-Ta germline . no 658 .
srip75950 chr3 90389460 90389460 + L1-Ta germline . no 658 .
srip76385 chr3 103275235 103275235 - L1-Ta germline . no 658 .
srip76480 chr3 105473860 105473860 - L1-Ta germline . no 658 CBLB
srip76653 chr3 109836400 109836400 - L1-Ta germline . no 658 .
srip77103 chr3 123590712 123590712 + L1-Ta germline validated no 658 MYLK
srip77368 chr3 129972765 129972765 + L1-Ta germline . yes 658 COL6A4P2
srip77546 chr3 132588973 132588973 + L1-Ta germline validated no 658 NPHP3-AS1
srip77569 chr3 132664831 132664831 - L1-Ta germline . no 658 .
srip77817 chr3 137073450 137073450 + L1-Ta germline . no 658 .
srip78871 chr3 152701320 152701320 + L1-Ta germline . no 658 .
srip78923 chr3 154632590 154632590 + L1-Ta germline . yes 658 .
srip79219 chr3 158813156 158813156 - L1-Ta germline . yes 658 IQCJ;IQCJ-SCHIP1
srip79957 chr3 172749131 172749131 - L1-Ta germline . no 658 SPATA16
srip80205 chr3 175677955 175677955 - L1-Ta germline . no 658 .
srip80314 chr3 176091321 176091321 + L1-Ta germline . no 658 .
srip80914 chr3 182952475 182952475 - L1-Ta germline . no 658 MCF2L2
srip81380 chr3 186372123 186372123 + L1-Ta germline . no 658 .
srip81596 chr3 187835306 187835306 - L1-Ta germline . no 658 .
srip82649 chr4 15872009 15872009 - L1-Ta germline validated no 658 .
srip82699 chr4 16950725 16950725 + L1-Ta germline . yes 658 .
srip82757 chr4 18162355 18162355 - L1-Ta germline . no 658 .
srip83599 chr4 26929329 26929329 + L1-Ta germline . no 658 STIM2
srip84555 chr4 46799112 46799112 + L1-Ta germline . yes 658 COX7B2
srip84604 chr4 46883027 46883027 + L1-Ta germline . no 658 .
srip84664 chr4 47007779 47007779 - L1-Ta germline . no 658 .
srip85000 chr4 48738022 48738022 + L1-Ta germline . no 658 FRYL
srip85584 chr4 58428313 58428313 - L1-Ta germline . no 658 .
srip85861 chr4 59442445 59442445 - L1-Ta germline . no 658 .
srip86323 chr4 66809073 66809073 - L1-Ta germline . no 658 .
srip87119 chr4 75642671 75642671 - L1-Ta germline . no 658 .
srip87164 chr4 79032904 79032904 + L1-Ta germline . yes 658 FRAS1
srip87422 chr4 80864880 80864880 + L1-Ta germline . yes 658 ANTXR2
srip88064 chr4 88486275 88486275 + L1-Ta germline . yes 658 .
srip88089 chr4 91596796 91596796 - L1-Ta germline . no 658 FAM190A
srip89277 chr4 107492188 107492188 - L1-Ta germline . no 658 .
srip90320 chr4 115132696 115132696 + L1-Ta germline . no 658 .
srip91602 chr4 132181657 132181657 - L1-Ta germline . no 658 .
srip94140 chr4 167369021 167369021 - L1-Ta germline . no 658 .
srip94378 chr4 167683070 167683070 + L1-Ta germline . no 658 SPOCK3
srip94458 chr4 170281916 170281916 - L1-Ta germline . no 658 .
srip94515 chr4 170436610 170436610 - L1-Ta germline . no 658 NEK1
srip95105 chr4 182695155 182695155 - L1-Ta germline . no 658 .
srip95734 chr5 7603653 7603653 - L1-Ta germline . no 658 ADCY2
srip96400 chr5 12197468 12197468 - L1-Ta germline . yes 658 .
srip96853 chr5 20644380 20644380 - L1-Ta germline . no 658 .
srip97785 chr5 33633345 33633345 - L1-Ta germline . no 658 ADAMTS12
srip98065 chr5 33797556 33797556 - L1-Ta germline . no 658 ADAMTS12
srip98134 chr5 34153955 34153955 + L1-Ta germline . yes 658 .
srip98831 chr5 51488295 51488295 - L1-Ta germline . no 658 .
srip101440 chr5 99981611 99981611 + L1-Ta germline . yes 658 .
srip101723 chr5 108601132 108601132 + L1-Ta germline . no 658 .
srip102578 chr5 110474800 110474800 + L1-Ta germline . yes 658 .
srip103928 chr5 138420464 138420464 + L1-Ta germline . yes 658 SIL1
srip104352 chr5 147337963 147337963 - L1-Ta germline . no 658 .
srip104924 chr5 155488954 155488954 - L1-Ta germline . yes 658 .
srip105542 chr5 159351193 159351193 - L1-Ta germline . no 658 ADRA1B
srip106053 chr5 172829796 172829796 - L1-Ta germline . no 658 .
srip106108 chr5 177205284 177205284 + L1-Ta germline . no 658 FAM153A
srip107685 chr6 18910854 18910854 - L1-Ta germline . no 658 .
srip108205 chr6 39645329 39645329 - L1-Ta germline . yes 658 KIF6
srip108685 chr6 46310294 46310294 + L1-Ta germline . no 658 .
srip108756 chr6 48868617 48868617 - L1-Ta germline . no 658 .
srip108781 chr6 50611605 50611605 - L1-Ta germline . no 658 .
srip108869 chr6 55594843 55594843 - L1-Ta germline . no 658 .
srip109846 chr6 66787597 66787597 - L1-Ta germline . no 658 .
srip109890 chr6 67313668 67313668 + L1-Ta germline . yes 658 .
srip110140 chr6 70726265 70726265 + L1-Ta germline . yes 658 COL19A1
srip110368 chr6 73995229 73995229 - L1-Ta germline . no 658 C6orf147
srip110422 chr6 74865444 74865444 - L1-Ta germline . no 658 .
srip110893 chr6 77980636 77980636 - L1-Ta germline . no 658 .
srip111364 chr6 84049691 84049691 + L1-Ta germline . yes 658 ME1
srip112013 chr6 91669505 91669505 - L1-Ta germline . no 658 .
srip112925 chr6 113030984 113030984 + L1-Ta germline . no 658 LOC100287612
srip113097 chr6 115899917 115899917 - L1-Ta germline . no 658 .
srip113168 chr6 121489953 121489953 + L1-Ta germline . no 658 C6orf170
srip113580 chr6 136712687 136712687 + L1-Ta germline . yes 658 MAP7
srip113838 chr6 142450109 142450109 - L1-Ta germline . no 658 .
srip114181 chr6 145500938 145500938 - L1-Ta germline . no 658 .
srip116261 chr7 12725158 12725158 + L1-Ta germline . no 658 .
srip116535 chr7 25081462 25081462 - L1-Ta germline . no 658 .
srip116725 chr7 30484894 30484894 + L1-Ta germline . no 658 NOD1
srip117110 chr7 45733735 45733735 + L1-Ta germline . no 658 ADCY1
srip118623 chr7 69828469 69828469 + L1-Ta germline . no 658 AUTS2
srip118939 chr7 75335791 75335791 - L1-Ta germline . no 658 HIP1
srip121443 chr7 107829247 107829247 + L1-Ta germline . no 658 NRCAM
srip122075 chr7 109548699 109548699 + L1-Ta germline . no 658 .
srip122490 chr7 113139394 113139394 + L1-Ta germline . yes 658 .
srip122960 chr7 127930833 127930833 - L1-Ta germline . no 658 .
srip123068 chr7 130386823 130386823 - L1-Ta germline . no 658 .
srip123203 chr7 141620449 141620449 - L1-Ta germline . no 658 .
srip123457 chr7 145063368 145063368 + L1-Ta germline . yes 658 .
srip124787 chr8 9597567 9597567 + L1-Ta germline . yes 658 TNKS
srip125008 chr8 18768149 18768149 + L1-Ta germline . yes 658 PSD3
srip125707 chr8 39576458 39576458 + L1-Ta germline . no 658 ADAM18
srip128315 chr8 89703984 89703984 + L1-Ta germline . no 658 .
srip128510 chr8 97911008 97911008 + L1-Ta germline . yes 658 PGCP
srip128925 chr8 114072203 114072203 - L1-Ta germline . no 658 CSMD3
srip130412 chr8 137450317 137450317 - L1-Ta germline . yes 658 .
srip131630 chr9 10137698 10137698 + L1-Ta germline . yes 658 PTPRD
srip131901 chr9 28111894 28111894 - L1-Ta germline . yes 658 LINGO2
srip133205 chr9 32463884 32463884 - L1-Ta germline . no 658 DDX58
srip133595 chr9 32562030 32562030 - L1-Ta germline validated no 658 NDUFB6
srip134115 chr9 80014129 80014129 + L1-Ta germline . no 658 VPS13A
srip134292 chr9 86065262 86065262 - L1-Ta germline . no 658 FRMD3
srip134582 chr9 98465870 98465870 + L1-Ta germline . yes 658 .
srip134799 chr9 103749297 103749297 + L1-Ta germline . no 658 .
srip134834 chr9 104443975 104443975 - L1-Ta germline . no 658 GRIN3A
srip135667 chr9 115560387 115560387 - L1-Ta germline . no 658 SNX30
srip136342 chrX 11731399 11731399 + L1-Ta germline . yes 658 .
srip136961 chrX 45449426 45449426 + L1-Ta germline . no 658 .
srip137992 chrX 63233094 63233094 - L1-Ta germline . no 658 .
srip138287 chrX 64430988 64430988 + L1-Ta germline . no 658 .
srip138481 chrX 72606851 72606851 + L1-Ta germline . no 658 .
srip138743 chrX 75543182 75543182 - L1-Ta germline . no 658 .
srip139032 chrX 75949601 75949601 + L1-Ta germline . no 658 .
srip139159 chrX 81102668 81102668 + L1-Ta germline . yes 658 .
srip139338 chrX 85609830 85609830 + L1-Ta germline . yes 658 DACH2
srip139763 chrX 98264296 98264296 - L1-Ta germline validated no 658 .
srip140617 chrX 118569413 118569413 - L1-Ta germline . no 658 SLC25A43
srip140842 chrX 120397638 120397638 - L1-Ta germline . no 658 .
srip142127 chrX 154745667 154745667 - L1-Ta germline . no 658 TMLHE