euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

221 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip52 chr1 12875996 12875996 - L1-Ta germline . no 655 .
srip184 chr1 31041664 31041664 + L1-Ta germline . no 655 .
srip1185 chr1 65909392 65909392 - L1-Ta germline . no 655 LEPR
srip1633 chr1 74984526 74984526 - L1-Ta germline . no 655 FPGT-TNNI3K;TNNI3K
srip2139 chr1 86398798 86398798 + L1-Ta germline . no 655 COL24A1
srip2226 chr1 87144762 87144762 - L1-Ta germline . no 655 .
srip2583 chr1 99678977 99678977 - L1-Ta germline . no 655 .
srip2635 chr1 99854086 99854086 - L1-Ta germline . no 655 .
srip3234 chr1 105386449 105386449 - L1-Ta germline . no 655 .
srip3962 chr1 121478354 121478354 + L1-Ta germline . yes 655 .
srip4087 chr1 149308424 149308424 + L1-Ta germline . no 655 LOC645262
srip4193 chr1 152462236 152462236 - L1-Ta germline . no 655 .
srip4278 chr1 158238664 158238664 + L1-Ta germline . yes 655 .
srip4559 chr1 163231881 163231881 - L1-Ta germline . no 655 LOC100505773
srip4794 chr1 165940104 165940104 - L1-Ta germline . yes 655 .
srip4829 chr1 166212290 166212290 - L1-Ta germline . yes 655 .
srip5514 chr1 180668321 180668321 - L1-Ta germline . no 655 XPR1
srip6124 chr1 193836827 193836827 + L1-Ta germline . yes 655 .
srip7599 chr10 5293335 5293335 + L1-Ta germline . yes 655 .
srip8482 chr10 25707697 25707697 - L1-Ta germline . no 655 GPR158
srip8703 chr10 32929792 32929792 - L1-Ta germline . no 655 C10orf68
srip8963 chr10 58863547 58863547 - L1-Ta germline . no 655 .
srip10778 chr10 107137008 107137008 - L1-Ta germline . no 655 .
srip11277 chr10 110846814 110846814 + L1-Ta germline . yes 655 .
srip12607 chr11 15995864 15995864 - L1-Ta germline . no 655 SOX6
srip12699 chr11 24355519 24355519 + L1-Ta germline . yes 655 .
srip13069 chr11 26418548 26418548 + L1-Ta germline . no 655 ANO3
srip14838 chr11 48755930 48755930 + L1-Ta germline . no 655 .
srip15113 chr11 55163970 55163970 + L1-Ta germline . no 655 .
srip15521 chr11 59815986 59815986 - L1-Ta germline . no 655 .
srip17259 chr11 95175423 95175423 + L1-Ta germline . no 655 .
srip17384 chr11 99478828 99478828 + L1-Ta germline . yes 655 CNTN5
srip20288 chr12 14335361 14335361 + L1-Ta germline . yes 655 .
srip21074 chr12 33325803 33325803 - L1-Ta germline . no 655 .
srip22451 chr12 44501995 44501995 - L1-Ta germline . yes 655 TMEM117
srip22999 chr12 61396241 61396241 - L1-Ta germline . no 655 .
srip24047 chr12 79570815 79570815 - L1-Ta germline . no 655 SYT1
srip25281 chr12 98672913 98672913 + L1-Ta germline . yes 655 .
srip26130 chr12 126783235 126783235 - L1-Ta germline . no 655 .
srip27588 chr13 33441812 33441812 - L1-Ta germline . no 655 .
srip28195 chr13 49045721 49045721 + L1-Ta germline . no 655 RB1
srip28361 chr13 57793451 57793451 - L1-Ta germline . no 655 .
srip32052 chr13 86502081 86502081 + L1-Ta germline . no 655 .
srip32216 chr13 88851194 88851194 - L1-Ta germline . no 655 .
srip32408 chr13 91626302 91626302 + L1-Ta germline . no 655 .
srip32447 chr13 92855881 92855881 + L1-Ta germline . yes 655 GPC5
srip34393 chr14 24582584 24582584 + L1-Ta germline . yes 655 .
srip38000 chr14 71020049 71020049 + L1-Ta germline . no 655 .
srip38885 chr14 95605326 95605326 + L1-Ta germline . no 655 DICER1
srip38971 chr15 20022208 20022208 - L1-Ta germline . no 655 .
srip40775 chr15 51875289 51875289 - L1-Ta germline . no 655 DMXL2
srip40833 chr15 53448042 53448042 - L1-Ta germline . no 655 .
srip41797 chr15 71027483 71027483 + L1-Ta germline . yes 655 UACA
srip42291 chr15 83551535 83551535 - L1-Ta germline . no 655 HOMER2
srip42651 chr15 88059478 88059478 + L1-Ta germline . no 655 .
srip43282 chr15 100931158 100931158 - L1-Ta germline . no 655 .
srip43843 chr16 7925421 7925421 + L1-Ta germline . no 655 .
srip44161 chr16 18832538 18832538 - L1-Ta germline . no 655 SMG1
srip47233 chr17 28398312 28398312 + L1-Ta germline . no 655 EFCAB5
srip47482 chr17 32192799 32192799 + L1-Ta germline . yes 655 ACCN1
srip48703 chr18 5332408 5332408 - L1-Ta germline . no 655 .
srip49513 chr18 30185593 30185593 - L1-Ta germline . no 655 .
srip50862 chr18 58172211 58172211 - L1-Ta germline . no 655 .
srip51044 chr18 59763726 59763726 - L1-Ta germline . no 655 PIGN
srip51209 chr18 63446487 63446487 - L1-Ta germline . no 655 CDH7
srip51349 chr18 69024727 69024727 + L1-Ta germline . yes 655 .
srip51396 chr18 69617341 69617341 + L1-Ta germline . no 655 .
srip52495 chr19 55091547 55091547 - L1-Ta germline . no 655 LILRA2
srip52552 chr2 988745 988745 - L1-Ta germline . no 655 SNTG2
srip54371 chr2 41777137 41777137 - L1-Ta germline . no 655 .
srip56294 chr2 83068216 83068216 + L1-Ta germline . yes 655 .
srip56984 chr2 108631988 108631988 - L1-Ta germline . no 655 .
srip57325 chr2 116246475 116246475 + L1-Ta germline . no 655 DPP10
srip57389 chr2 118667183 118667183 - L1-Ta germline . no 655 .
srip57604 chr2 126510571 126510571 + L1-Ta germline . yes 655 .
srip58347 chr2 142788891 142788891 - L1-Ta germline . no 655 LRP1B
srip58555 chr2 144010781 144010781 + L1-Ta germline . no 655 ARHGAP15
srip58636 chr2 144624534 144624534 + L1-Ta germline . yes 655 .
srip59928 chr2 176346680 176346680 - L1-Ta germline . no 655 .
srip60762 chr2 191478703 191478703 - L1-Ta germline . no 655 .
srip61312 chr2 205631655 205631655 - L1-Ta germline . no 655 PARD3B
srip61610 chr2 212707182 212707182 + L1-Ta germline . no 655 ERBB4
srip61743 chr2 214647628 214647628 - L1-Ta germline . no 655 SPAG16
srip61811 chr2 218176494 218176494 + L1-Ta germline . yes 655 DIRC3
srip63968 chr20 23412776 23412776 + L1-Ta germline . yes 655 .
srip64744 chr20 41952103 41952103 - L1-Ta germline . no 655 .
srip65150 chr20 51779972 51779972 - L1-Ta germline . yes 655 TSHZ2
srip67734 chr22 22715585 22715585 + L1-Ta germline . no 655 IGL@
srip68225 chr22 29065287 29065287 + L1-Ta germline . yes 655 TTC28
srip68779 chr22 44324601 44324601 - L1-Ta germline . no 655 PNPLA3
srip69742 chr3 2050178 2050178 + L1-Ta germline . yes 655 .
srip69864 chr3 4080917 4080917 - L1-Ta germline . yes 655 .
srip70634 chr3 22097802 22097802 + L1-Ta germline . no 655 LOC100505836
srip70894 chr3 26439488 26439488 - L1-Ta germline . no 655 .
srip72107 chr3 46824583 46824583 - L1-Ta germline . no 655 .
srip73344 chr3 59852889 59852889 + L1-Ta germline . no 655 FHIT
srip74596 chr3 81770349 81770349 + L1-Ta germline . yes 655 GBE1
srip74987 chr3 84433383 84433383 + L1-Ta germline . no 655 .
srip75948 chr3 90389460 90389460 + L1-Ta germline . no 655 .
srip76382 chr3 103275235 103275235 - L1-Ta germline . no 655 .
srip76477 chr3 105473860 105473860 - L1-Ta germline . no 655 CBLB
srip76571 chr3 108924737 108924737 + L1-Ta germline . yes 655 .
srip76650 chr3 109836400 109836400 - L1-Ta germline . no 655 .
srip76772 chr3 116084880 116084880 + L1-Ta germline . no 655 LSAMP-AS1;LSAMP
srip77100 chr3 123590712 123590712 + L1-Ta germline validated no 655 MYLK
srip77365 chr3 129972765 129972765 + L1-Ta germline . yes 655 COL6A4P2
srip77426 chr3 130352893 130352893 + L1-Ta germline . yes 655 COL6A6
srip77567 chr3 132664831 132664831 - L1-Ta germline . no 655 .
srip77814 chr3 137073450 137073450 + L1-Ta germline . no 655 .
srip78920 chr3 154632590 154632590 + L1-Ta germline . yes 655 .
srip79216 chr3 158813156 158813156 - L1-Ta germline . yes 655 IQCJ;IQCJ-SCHIP1
srip80202 chr3 175677955 175677955 - L1-Ta germline . no 655 .
srip80913 chr3 182952475 182952475 - L1-Ta germline . no 655 MCF2L2
srip81594 chr3 187835306 187835306 - L1-Ta germline . no 655 .
srip82599 chr4 14849158 14849158 + L1-Ta germline . no 655 .
srip82630 chr4 15849204 15849204 + L1-Ta germline . no 655 CD38
srip83290 chr4 19170950 19170950 + L1-Ta germline . no 655 .
srip83370 chr4 21167096 21167096 + L1-Ta germline . no 655 KCNIP4
srip84554 chr4 46799112 46799112 + L1-Ta germline . yes 655 COX7B2
srip84938 chr4 48416463 48416463 - L1-Ta germline . no 655 SLAIN2
srip84997 chr4 48738022 48738022 + L1-Ta germline . no 655 FRYL
srip85042 chr4 49057917 49057917 - L1-Ta germline . no 655 CWH43
srip85858 chr4 59442445 59442445 - L1-Ta germline . no 655 .
srip87161 chr4 79032904 79032904 + L1-Ta germline . yes 655 FRAS1
srip87419 chr4 80864880 80864880 + L1-Ta germline . yes 655 ANTXR2
srip87730 chr4 82931377 82931377 + L1-Ta germline . yes 655 .
srip87758 chr4 85317439 85317439 - L1-Ta germline . no 655 .
srip88061 chr4 88486275 88486275 + L1-Ta germline . yes 655 .
srip90317 chr4 115132696 115132696 + L1-Ta germline . no 655 .
srip90724 chr4 118765260 118765260 + L1-Ta germline . no 655 .
srip91170 chr4 127596258 127596258 + L1-Ta germline . no 655 .
srip93161 chr4 147543284 147543284 + L1-Ta germline . no 655 .
srip93313 chr4 152340401 152340401 - L1-Ta germline . no 655 FAM160A1
srip94137 chr4 167369021 167369021 - L1-Ta germline . no 655 .
srip94512 chr4 170436610 170436610 - L1-Ta germline . no 655 NEK1
srip95102 chr4 182695155 182695155 - L1-Ta germline . no 655 .
srip95733 chr5 7603653 7603653 - L1-Ta germline . no 655 ADCY2
srip96398 chr5 12197468 12197468 - L1-Ta germline . yes 655 .
srip96850 chr5 20644380 20644380 - L1-Ta germline . no 655 .
srip97782 chr5 33633345 33633345 - L1-Ta germline . no 655 ADAMTS12
srip98131 chr5 34153955 34153955 + L1-Ta germline . yes 655 .
srip98829 chr5 51488295 51488295 - L1-Ta germline . no 655 .
srip101437 chr5 99981611 99981611 + L1-Ta germline . yes 655 .
srip101519 chr5 105483500 105483500 - L1-Ta germline . no 655 .
srip101721 chr5 108601132 108601132 + L1-Ta germline . no 655 .
srip102814 chr5 118941211 118941211 + L1-Ta germline . no 655 .
srip103009 chr5 124907258 124907258 + L1-Ta germline . yes 655 .
srip103895 chr5 137130159 137130159 - L1-Ta germline . no 655 .
srip103925 chr5 138420464 138420464 + L1-Ta germline . yes 655 SIL1
srip104256 chr5 144473640 144473640 + L1-Ta germline . no 655 .
srip104350 chr5 147337963 147337963 - L1-Ta germline . no 655 .
srip105539 chr5 159351193 159351193 - L1-Ta germline . no 655 ADRA1B
srip105871 chr5 165848548 165848548 + L1-Ta germline . yes 655 .
srip106050 chr5 172829796 172829796 - L1-Ta germline . no 655 .
srip106620 chr6 2418002 2418002 - L1-Ta germline . no 655 .
srip107682 chr6 18910854 18910854 - L1-Ta germline . no 655 .
srip108202 chr6 39645329 39645329 - L1-Ta germline . yes 655 KIF6
srip108866 chr6 55594843 55594843 - L1-Ta germline . no 655 .
srip109843 chr6 66787597 66787597 - L1-Ta germline . no 655 .
srip110138 chr6 70726265 70726265 + L1-Ta germline . yes 655 COL19A1
srip110366 chr6 73995229 73995229 - L1-Ta germline . no 655 C6orf147
srip112012 chr6 91669505 91669505 - L1-Ta germline . no 655 .
srip112922 chr6 113030984 113030984 + L1-Ta germline . no 655 LOC100287612
srip113094 chr6 115899917 115899917 - L1-Ta germline . no 655 .
srip113577 chr6 136712687 136712687 + L1-Ta germline . yes 655 MAP7
srip113835 chr6 142450109 142450109 - L1-Ta germline . no 655 .
srip114178 chr6 145500938 145500938 - L1-Ta germline . no 655 .
srip114618 chr6 148195788 148195788 + L1-Ta germline . no 655 .
srip116232 chr7 11561087 11561087 - L1-Ta germline . no 655 THSD7A
srip116532 chr7 25081462 25081462 - L1-Ta germline . no 655 .
srip116657 chr7 28783416 28783416 - L1-Ta germline . no 655 CREB5
srip116722 chr7 30484894 30484894 + L1-Ta germline . no 655 NOD1
srip117107 chr7 45733735 45733735 + L1-Ta germline . no 655 ADCY1
srip118566 chr7 69668336 69668336 + L1-Ta germline . yes 655 AUTS2
srip118622 chr7 69828469 69828469 + L1-Ta germline . no 655 AUTS2
srip119658 chr7 84901721 84901721 - L1-Ta germline . no 655 .
srip120689 chr7 92857543 92857543 - L1-Ta germline . no 655 .
srip121440 chr7 107829247 107829247 + L1-Ta germline . no 655 NRCAM
srip122072 chr7 109548699 109548699 + L1-Ta germline . no 655 .
srip122326 chr7 111609264 111609264 + L1-Ta germline . yes 655 DOCK4
srip122487 chr7 113139394 113139394 + L1-Ta germline . yes 655 .
srip122959 chr7 127930833 127930833 - L1-Ta germline . no 655 .
srip123008 chr7 129507566 129507566 + L1-Ta germline . no 655 UBE2H
srip123065 chr7 130386823 130386823 - L1-Ta germline . no 655 .
srip123200 chr7 141620449 141620449 - L1-Ta germline . no 655 .
srip123455 chr7 145063368 145063368 + L1-Ta germline . yes 655 .
srip124345 chr8 5829277 5829277 - L1-Ta germline . no 655 .
srip124784 chr8 9597567 9597567 + L1-Ta germline . yes 655 TNKS
srip125005 chr8 18768149 18768149 + L1-Ta germline . yes 655 PSD3
srip126978 chr8 71583563 71583563 - L1-Ta germline . no 655 XKR9
srip128148 chr8 85428607 85428607 + L1-Ta germline . no 655 RALYL
srip128508 chr8 97911008 97911008 + L1-Ta germline . yes 655 PGCP
srip128922 chr8 114072203 114072203 - L1-Ta germline . no 655 CSMD3
srip130409 chr8 137450317 137450317 - L1-Ta germline . yes 655 .
srip130509 chr9 1337904 1337904 - L1-Ta germline . no 655 .
srip130718 chr9 5491409 5491409 + L1-Ta germline . no 655 .
srip131628 chr9 10137698 10137698 + L1-Ta germline . yes 655 PTPRD
srip131676 chr9 12556845 12556845 - L1-Ta germline . no 655 .
srip134112 chr9 80014129 80014129 + L1-Ta germline . no 655 VPS13A
srip134376 chr9 92917935 92917935 + L1-Ta germline . yes 655 .
srip134459 chr9 94058479 94058479 - L1-Ta germline . no 655 AUH
srip134579 chr9 98465870 98465870 + L1-Ta germline . yes 655 .
srip134741 chr9 102615582 102615582 - L1-Ta germline . no 655 NR4A3
srip134797 chr9 103749297 103749297 + L1-Ta germline . no 655 .
srip134831 chr9 104443975 104443975 - L1-Ta germline . no 655 GRIN3A
srip136340 chrX 11731399 11731399 + L1-Ta germline . yes 655 .
srip136893 chrX 34837319 34837319 - L1-Ta germline . no 655 .
srip137015 chrX 49731196 49731196 - L1-Ta germline . no 655 CLCN5
srip137052 chrX 49784005 49784005 - L1-Ta germline . no 655 CLCN5
srip137549 chrX 55585146 55585146 - L1-Ta germline . no 655 .
srip137990 chrX 63233094 63233094 - L1-Ta germline . no 655 .
srip138479 chrX 72606851 72606851 + L1-Ta germline . no 655 .
srip138740 chrX 75543182 75543182 - L1-Ta germline . no 655 .
srip139030 chrX 75949601 75949601 + L1-Ta germline . no 655 .
srip139157 chrX 81102668 81102668 + L1-Ta germline . yes 655 .
srip139335 chrX 85609830 85609830 + L1-Ta germline . yes 655 DACH2
srip140783 chrX 119892835 119892835 - L1-Ta germline . no 655 .
srip140840 chrX 120397638 120397638 - L1-Ta germline . no 655 .
srip141436 chrX 130140534 130140534 + L1-Ta germline . no 655 .
srip141615 chrX 137146500 137146500 + L1-Ta germline . no 655 .
srip142124 chrX 154745667 154745667 - L1-Ta germline . no 655 TMLHE