euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

235 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip908 chr1 56834937 56834937 + L1-Ta germline . yes 654 .
srip1222 chr1 67544154 67544154 - L1-Ta germline . no 654 .
srip1632 chr1 74984526 74984526 - L1-Ta germline . no 654 FPGT-TNNI3K;TNNI3K
srip2138 chr1 86398798 86398798 + L1-Ta germline . no 654 COL24A1
srip2225 chr1 87144762 87144762 - L1-Ta germline . no 654 .
srip2582 chr1 99678977 99678977 - L1-Ta germline . no 654 .
srip2823 chr1 101978990 101978990 - L1-Ta germline . no 654 .
srip3233 chr1 105386449 105386449 - L1-Ta germline . no 654 .
srip3961 chr1 121478354 121478354 + L1-Ta germline . yes 654 .
srip4277 chr1 158238664 158238664 + L1-Ta germline . yes 654 .
srip4558 chr1 163231881 163231881 - L1-Ta germline . no 654 LOC100505773
srip4793 chr1 165940104 165940104 - L1-Ta germline . yes 654 .
srip5244 chr1 176721478 176721478 + L1-Ta germline . yes 654 PAPPA2
srip5287 chr1 179575336 179575336 - L1-Ta germline . no 654 TDRD5
srip5823 chr1 192072266 192072266 - L1-Ta germline . no 654 .
srip6123 chr1 193836827 193836827 + L1-Ta germline . yes 654 .
srip7036 chr1 228058514 228058514 - L1-Ta germline . yes 654 .
srip7598 chr10 5293335 5293335 + L1-Ta germline . yes 654 .
srip7644 chr10 6411577 6411577 - L1-Ta germline . no 654 .
srip8481 chr10 25707697 25707697 - L1-Ta germline . no 654 GPR158
srip8702 chr10 32929792 32929792 - L1-Ta germline . no 654 C10orf68
srip8962 chr10 58863547 58863547 - L1-Ta germline . no 654 .
srip11276 chr10 110846814 110846814 + L1-Ta germline . yes 654 .
srip13656 chr11 33670122 33670122 + L1-Ta germline validated no 654 C11orf41
srip16777 chr11 87051059 87051059 - L1-Ta germline . no 654 .
srip17225 chr11 94684419 94684419 + L1-Ta germline . no 654 .
srip17383 chr11 99478828 99478828 + L1-Ta germline . yes 654 CNTN5
srip18404 chr11 122349362 122349362 + L1-Ta germline . no 654 .
srip20287 chr12 14335361 14335361 + L1-Ta germline . yes 654 .
srip21921 chr12 42238062 42238062 - L1-Ta germline . no 654 .
srip22450 chr12 44501995 44501995 - L1-Ta germline . yes 654 TMEM117
srip23402 chr12 70167057 70167057 - L1-Ta germline . no 654 RAB3IP
srip24046 chr12 79570815 79570815 - L1-Ta germline . no 654 SYT1
srip24207 chr12 84955173 84955173 - L1-Ta germline . no 654 .
srip24962 chr12 86633816 86633816 + L1-Ta germline . yes 654 MGAT4C
srip25280 chr12 98672913 98672913 + L1-Ta germline . yes 654 .
srip25351 chr12 102842494 102842494 + L1-Ta germline . no 654 IGF1
srip27521 chr13 30215833 30215833 - L1-Ta germline . no 654 .
srip27587 chr13 33441812 33441812 - L1-Ta germline . no 654 .
srip28360 chr13 57793451 57793451 - L1-Ta germline . no 654 .
srip28468 chr13 59088395 59088395 + L1-Ta germline . no 654 .
srip28690 chr13 61462318 61462318 - L1-Ta germline . no 654 .
srip29433 chr13 61734484 61734484 + L1-Ta germline . no 654 .
srip32051 chr13 86502081 86502081 + L1-Ta germline . no 654 .
srip32215 chr13 88851194 88851194 - L1-Ta germline . no 654 .
srip32446 chr13 92855881 92855881 + L1-Ta germline . yes 654 GPC5
srip33688 chr13 104704163 104704163 + L1-Ta germline . yes 654 .
srip35374 chr14 30854669 30854669 + L1-Ta germline . no 654 .
srip36332 chr14 39875096 39875096 + L1-Ta germline validated no 654 FBXO33
srip36398 chr14 41197899 41197899 - L1-Ta germline . no 654 .
srip37017 chr14 48662336 48662336 + L1-Ta germline . no 654 .
srip37999 chr14 71020049 71020049 + L1-Ta germline . no 654 .
srip38884 chr14 95605326 95605326 + L1-Ta germline . no 654 DICER1
srip38970 chr15 20022208 20022208 - L1-Ta germline . no 654 .
srip39009 chr15 20116657 20116657 + L1-Ta germline . no 654 .
srip40774 chr15 51875289 51875289 - L1-Ta germline . no 654 DMXL2
srip40832 chr15 53448042 53448042 - L1-Ta germline . no 654 .
srip41299 chr15 58012013 58012013 - L1-Ta germline . no 654 .
srip41796 chr15 71027483 71027483 + L1-Ta germline . yes 654 UACA
srip43588 chr16 6793830 6793830 + L1-Ta germline . no 654 RBFOX1
srip43842 chr16 7925421 7925421 + L1-Ta germline . no 654 .
srip44160 chr16 18832538 18832538 - L1-Ta germline . no 654 SMG1
srip47417 chr17 29659591 29659591 - L1-Ta germline . no 654 NF1
srip47481 chr17 32192799 32192799 + L1-Ta germline . yes 654 ACCN1
srip48702 chr18 5332408 5332408 - L1-Ta germline . no 654 .
srip49047 chr18 23067399 23067399 + L1-Ta germline . no 654 .
srip49512 chr18 30185593 30185593 - L1-Ta germline . no 654 .
srip49729 chr18 34567457 34567457 + L1-Ta germline . yes 654 KIAA1328
srip50770 chr18 51762741 51762741 - L1-Ta germline . no 654 .
srip50810 chr18 51956938 51956938 + L1-Ta germline . yes 654 .
srip51043 chr18 59763726 59763726 - L1-Ta germline . no 654 PIGN
srip51120 chr18 61030433 61030433 - L1-Ta germline . no 654 KDSR
srip51208 chr18 63446487 63446487 - L1-Ta germline . no 654 CDH7
srip51278 chr18 68413712 68413712 - L1-Ta germline . no 654 .
srip51348 chr18 69024727 69024727 + L1-Ta germline . yes 654 .
srip52551 chr2 988745 988745 - L1-Ta germline . no 654 SNTG2
srip54243 chr2 36570251 36570251 - L1-Ta germline . no 654 .
srip54370 chr2 41777137 41777137 - L1-Ta germline . no 654 .
srip55625 chr2 73354355 73354355 - L1-Ta germline . no 654 .
srip55944 chr2 81834768 81834768 - L1-Ta germline . no 654 .
srip56293 chr2 83068216 83068216 + L1-Ta germline . yes 654 .
srip56983 chr2 108631988 108631988 - L1-Ta germline . no 654 .
srip57324 chr2 116246475 116246475 + L1-Ta germline . no 654 DPP10
srip57388 chr2 118667183 118667183 - L1-Ta germline . no 654 .
srip57603 chr2 126510571 126510571 + L1-Ta germline . yes 654 .
srip57773 chr2 130439851 130439851 - L1-Ta germline . no 654 .
srip58346 chr2 142788891 142788891 - L1-Ta germline . no 654 LRP1B
srip58635 chr2 144624534 144624534 + L1-Ta germline . yes 654 .
srip59452 chr2 153864262 153864262 - L1-Ta germline . no 654 .
srip59824 chr2 170111155 170111155 + L1-Ta germline . yes 654 LRP2
srip59927 chr2 176346680 176346680 - L1-Ta germline . no 654 .
srip61311 chr2 205631655 205631655 - L1-Ta germline . no 654 PARD3B
srip61742 chr2 214647628 214647628 - L1-Ta germline . no 654 SPAG16
srip61810 chr2 218176494 218176494 + L1-Ta germline . yes 654 DIRC3
srip63009 chr20 7096788 7096788 - L1-Ta germline . no 654 .
srip63283 chr20 12781652 12781652 - L1-Ta germline . no 654 .
srip63673 chr20 19400466 19400466 - L1-Ta germline . no 654 SLC24A3
srip63967 chr20 23412776 23412776 + L1-Ta germline . yes 654 .
srip66067 chr21 20381800 20381800 + L1-Ta germline . no 654 .
srip66514 chr21 24125137 24125137 + L1-Ta germline . yes 654 .
srip66896 chr21 29069173 29069173 + L1-Ta germline . no 654 .
srip67733 chr22 22715585 22715585 + L1-Ta germline . no 654 IGL@
srip68224 chr22 29065287 29065287 + L1-Ta germline . yes 654 TTC28
srip69672 chr3 656444 656444 - L1-Ta germline validated no 654 .
srip69741 chr3 2050178 2050178 + L1-Ta germline . yes 654 .
srip69863 chr3 4080917 4080917 - L1-Ta germline . yes 654 .
srip70633 chr3 22097802 22097802 + L1-Ta germline . no 654 LOC100505836
srip70839 chr3 25740941 25740941 - L1-Ta germline . no 654 .
srip71357 chr3 33554072 33554072 + L1-Ta germline . no 654 CLASP2
srip71404 chr3 34694359 34694359 - L1-Ta germline . yes 654 .
srip73343 chr3 59852889 59852889 + L1-Ta germline . no 654 FHIT
srip74595 chr3 81770349 81770349 + L1-Ta germline . yes 654 GBE1
srip76381 chr3 103275235 103275235 - L1-Ta germline . no 654 .
srip76476 chr3 105473860 105473860 - L1-Ta germline . no 654 CBLB
srip76570 chr3 108924737 108924737 + L1-Ta germline . yes 654 .
srip76649 chr3 109836400 109836400 - L1-Ta germline . no 654 .
srip76771 chr3 116084880 116084880 + L1-Ta germline . no 654 LSAMP-AS1;LSAMP
srip77099 chr3 123590712 123590712 + L1-Ta germline validated no 654 MYLK
srip77364 chr3 129972765 129972765 + L1-Ta germline . yes 654 COL6A4P2
srip77566 chr3 132664831 132664831 - L1-Ta germline . no 654 .
srip77813 chr3 137073450 137073450 + L1-Ta germline . no 654 .
srip80311 chr3 176091321 176091321 + L1-Ta germline . no 654 .
srip80912 chr3 182952475 182952475 - L1-Ta germline . no 654 MCF2L2
srip81593 chr3 187835306 187835306 - L1-Ta germline . no 654 .
srip82629 chr4 15849204 15849204 + L1-Ta germline . no 654 CD38
srip82697 chr4 16950725 16950725 + L1-Ta germline . yes 654 .
srip83289 chr4 19170950 19170950 + L1-Ta germline . no 654 .
srip83555 chr4 23622456 23622456 + L1-Ta germline . yes 654 .
srip84662 chr4 47007779 47007779 - L1-Ta germline . no 654 .
srip84996 chr4 48738022 48738022 + L1-Ta germline . no 654 FRYL
srip85619 chr4 58888335 58888335 + L1-Ta germline . no 654 .
srip87026 chr4 71093305 71093305 + L1-Ta germline . no 654 C4orf7
srip87418 chr4 80864880 80864880 + L1-Ta germline . yes 654 ANTXR2
srip88340 chr4 99513572 99513572 - L1-Ta germline . no 654 TSPAN5
srip89275 chr4 107492188 107492188 - L1-Ta germline . no 654 .
srip90316 chr4 115132696 115132696 + L1-Ta germline . no 654 .
srip90723 chr4 118765260 118765260 + L1-Ta germline . no 654 .
srip91169 chr4 127596258 127596258 + L1-Ta germline . no 654 .
srip92302 chr4 136006539 136006539 + L1-Ta germline . no 654 .
srip94136 chr4 167369021 167369021 - L1-Ta germline . no 654 .
srip94455 chr4 170281916 170281916 - L1-Ta germline . no 654 .
srip94511 chr4 170436610 170436610 - L1-Ta germline . no 654 NEK1
srip95101 chr4 182695155 182695155 - L1-Ta germline . no 654 .
srip96397 chr5 12197468 12197468 - L1-Ta germline . yes 654 .
srip97781 chr5 33633345 33633345 - L1-Ta germline . no 654 ADAMTS12
srip98130 chr5 34153955 34153955 + L1-Ta germline . yes 654 .
srip98828 chr5 51488295 51488295 - L1-Ta germline . no 654 .
srip101436 chr5 99981611 99981611 + L1-Ta germline . yes 654 .
srip101518 chr5 105483500 105483500 - L1-Ta germline . no 654 .
srip102575 chr5 110474800 110474800 + L1-Ta germline . yes 654 .
srip102813 chr5 118941211 118941211 + L1-Ta germline . no 654 .
srip103008 chr5 124907258 124907258 + L1-Ta germline . yes 654 .
srip104255 chr5 144473640 144473640 + L1-Ta germline . no 654 .
srip104349 chr5 147337963 147337963 - L1-Ta germline . no 654 .
srip104921 chr5 155488954 155488954 - L1-Ta germline . yes 654 .
srip105538 chr5 159351193 159351193 - L1-Ta germline . no 654 ADRA1B
srip105870 chr5 165848548 165848548 + L1-Ta germline . yes 654 .
srip106049 chr5 172829796 172829796 - L1-Ta germline . no 654 .
srip106619 chr6 2418002 2418002 - L1-Ta germline . no 654 .
srip107681 chr6 18910854 18910854 - L1-Ta germline . no 654 .
srip108201 chr6 39645329 39645329 - L1-Ta germline . yes 654 KIF6
srip108745 chr6 48868435 48868435 - L1-Ta germline . no 654 .
srip109889 chr6 67313668 67313668 + L1-Ta germline . yes 654 .
srip110365 chr6 73995229 73995229 - L1-Ta germline . no 654 C6orf147
srip110421 chr6 74865444 74865444 - L1-Ta germline . no 654 .
srip110892 chr6 77980636 77980636 - L1-Ta germline . no 654 .
srip112011 chr6 91669505 91669505 - L1-Ta germline . no 654 .
srip112921 chr6 113030984 113030984 + L1-Ta germline . no 654 LOC100287612
srip113408 chr6 125643206 125643206 + L1-Ta germline . yes 654 .
srip113576 chr6 136712687 136712687 + L1-Ta germline . yes 654 MAP7
srip113834 chr6 142450109 142450109 - L1-Ta germline . no 654 .
srip114177 chr6 145500938 145500938 - L1-Ta germline . no 654 .
srip114933 chr6 156361300 156361300 + L1-Ta germline . no 654 .
srip115748 chr6 162404960 162404960 + L1-Ta germline . no 654 PARK2
srip116656 chr7 28783416 28783416 - L1-Ta germline . no 654 CREB5
srip116721 chr7 30484894 30484894 + L1-Ta germline . no 654 NOD1
srip117106 chr7 45733735 45733735 + L1-Ta germline . no 654 ADCY1
srip117146 chr7 46350337 46350337 - L1-Ta germline . no 654 .
srip118565 chr7 69668336 69668336 + L1-Ta germline . yes 654 AUTS2
srip118621 chr7 69828469 69828469 + L1-Ta germline . no 654 AUTS2
srip118937 chr7 75335791 75335791 - L1-Ta germline . no 654 HIP1
srip122071 chr7 109548699 109548699 + L1-Ta germline . no 654 .
srip122325 chr7 111609264 111609264 + L1-Ta germline . yes 654 DOCK4
srip122486 chr7 113139394 113139394 + L1-Ta germline . yes 654 .
srip122958 chr7 127930833 127930833 - L1-Ta germline . no 654 .
srip123007 chr7 129507566 129507566 + L1-Ta germline . no 654 UBE2H
srip123199 chr7 141620449 141620449 - L1-Ta germline . no 654 .
srip123454 chr7 145063368 145063368 + L1-Ta germline . yes 654 .
srip124344 chr8 5829277 5829277 - L1-Ta germline . no 654 .
srip124783 chr8 9597567 9597567 + L1-Ta germline . yes 654 TNKS
srip125004 chr8 18768149 18768149 + L1-Ta germline . yes 654 PSD3
srip128147 chr8 85428607 85428607 + L1-Ta germline . no 654 RALYL
srip128507 chr8 97911008 97911008 + L1-Ta germline . yes 654 PGCP
srip128660 chr8 100233000 100233000 - L1-Ta germline . no 654 VPS13B
srip128921 chr8 114072203 114072203 - L1-Ta germline . no 654 CSMD3
srip130408 chr8 137450317 137450317 - L1-Ta germline . yes 654 .
srip130717 chr9 5491409 5491409 + L1-Ta germline . no 654 .
srip131100 chr9 6290488 6290488 + L1-Ta germline . no 654 .
srip131627 chr9 10137698 10137698 + L1-Ta germline . yes 654 PTPRD
srip131899 chr9 28111894 28111894 - L1-Ta germline . yes 654 LINGO2
srip133204 chr9 32463884 32463884 - L1-Ta germline . no 654 DDX58
srip134111 chr9 80014129 80014129 + L1-Ta germline . no 654 VPS13A
srip134246 chr9 82866814 82866814 + L1-Ta germline . no 654 .
srip134291 chr9 86065262 86065262 - L1-Ta germline . no 654 FRMD3
srip134578 chr9 98465870 98465870 + L1-Ta germline . yes 654 .
srip134740 chr9 102615582 102615582 - L1-Ta germline . no 654 NR4A3
srip134830 chr9 104443975 104443975 - L1-Ta germline . no 654 GRIN3A
srip135110 chr9 105162482 105162482 - L1-Ta germline . no 654 .
srip135666 chr9 115560387 115560387 - L1-Ta germline . no 654 SNX30
srip136339 chrX 11731399 11731399 + L1-Ta germline . yes 654 .
srip136509 chrX 14152010 14152010 - L1-Ta germline validated no 654 .
srip136959 chrX 45449426 45449426 + L1-Ta germline . no 654 .
srip137014 chrX 49731196 49731196 - L1-Ta germline . no 654 CLCN5
srip137051 chrX 49784005 49784005 - L1-Ta germline . no 654 CLCN5
srip137548 chrX 55585146 55585146 - L1-Ta germline . no 654 .
srip137989 chrX 63233094 63233094 - L1-Ta germline . no 654 .
srip138285 chrX 64430988 64430988 + L1-Ta germline . no 654 .
srip138366 chrX 67263241 67263241 + L1-Ta germline . no 654 OPHN1
srip138739 chrX 75543182 75543182 - L1-Ta germline . no 654 .
srip139029 chrX 75949601 75949601 + L1-Ta germline . no 654 .
srip139067 chrX 76411858 76411858 + L1-Ta germline . no 654 .
srip139079 chrX 76425435 76425435 - L1-Ta germline . no 654 .
srip139110 chrX 77696853 77696853 - L1-Ta germline . no 654 .
srip139156 chrX 81102668 81102668 + L1-Ta germline . yes 654 .
srip139359 chrX 85701285 85701285 - L1-Ta germline . no 654 DACH2
srip140158 chrX 105718545 105718545 + L1-Ta germline . yes 654 .
srip140328 chrX 111557678 111557678 - L1-Ta germline . no 654 ZCCHC16
srip140523 chrX 116025283 116025283 + L1-Ta germline . no 654 .
srip140557 chrX 117098155 117098155 + L1-Ta germline . yes 654 KLHL13
srip140615 chrX 118569413 118569413 - L1-Ta germline . no 654 SLC25A43
srip140782 chrX 119892835 119892835 - L1-Ta germline . no 654 .
srip140839 chrX 120397638 120397638 - L1-Ta germline . no 654 .
srip141435 chrX 130140534 130140534 + L1-Ta germline . no 654 .
srip141614 chrX 137146500 137146500 + L1-Ta germline . no 654 .
srip142123 chrX 154745667 154745667 - L1-Ta germline . no 654 TMLHE