euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

197 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip907 chr1 56834937 56834937 + L1-Ta germline . yes 653 .
srip1221 chr1 67544154 67544154 - L1-Ta germline . no 653 .
srip1631 chr1 74984526 74984526 - L1-Ta germline . no 653 FPGT-TNNI3K;TNNI3K
srip2137 chr1 86398798 86398798 + L1-Ta germline . no 653 COL24A1
srip2224 chr1 87144762 87144762 - L1-Ta germline . no 653 .
srip2581 chr1 99678977 99678977 - L1-Ta germline . no 653 .
srip2634 chr1 99854086 99854086 - L1-Ta germline . no 653 .
srip3232 chr1 105386449 105386449 - L1-Ta germline . no 653 .
srip3960 chr1 121478354 121478354 + L1-Ta germline . yes 653 .
srip4086 chr1 149308424 149308424 + L1-Ta germline . no 653 LOC645262
srip4276 chr1 158238664 158238664 + L1-Ta germline . yes 653 .
srip4828 chr1 166212290 166212290 - L1-Ta germline . yes 653 .
srip5866 chr1 192262235 192262235 - L1-Ta germline . no 653 .
srip6122 chr1 193836827 193836827 + L1-Ta germline . yes 653 .
srip7035 chr1 228058514 228058514 - L1-Ta germline . yes 653 .
srip7597 chr10 5293335 5293335 + L1-Ta germline . yes 653 .
srip7643 chr10 6411577 6411577 - L1-Ta germline . no 653 .
srip8701 chr10 32929792 32929792 - L1-Ta germline . no 653 C10orf68
srip8822 chr10 42527965 42527965 + L1-Ta germline . no 653 .
srip8961 chr10 58863547 58863547 - L1-Ta germline . no 653 .
srip10052 chr10 87121396 87121396 + L1-Ta germline . no 653 .
srip11275 chr10 110846814 110846814 + L1-Ta germline . yes 653 .
srip12606 chr11 15995864 15995864 - L1-Ta germline . no 653 SOX6
srip12698 chr11 24355519 24355519 + L1-Ta germline . yes 653 .
srip13655 chr11 33670122 33670122 + L1-Ta germline validated no 653 C11orf41
srip15520 chr11 59815986 59815986 - L1-Ta germline . no 653 .
srip16850 chr11 92875927 92875927 + L1-Ta germline . no 653 .
srip17382 chr11 99478828 99478828 + L1-Ta germline . yes 653 CNTN5
srip20286 chr12 14335361 14335361 + L1-Ta germline . yes 653 .
srip22449 chr12 44501995 44501995 - L1-Ta germline . yes 653 TMEM117
srip23401 chr12 70167057 70167057 - L1-Ta germline . no 653 RAB3IP
srip24045 chr12 79570815 79570815 - L1-Ta germline . no 653 SYT1
srip27520 chr13 30215833 30215833 - L1-Ta germline . no 653 .
srip27586 chr13 33441812 33441812 - L1-Ta germline . no 653 .
srip28467 chr13 59088395 59088395 + L1-Ta germline . no 653 .
srip29432 chr13 61734484 61734484 + L1-Ta germline . no 653 .
srip32050 chr13 86502081 86502081 + L1-Ta germline . no 653 .
srip32092 chr13 87543223 87543223 - L1-Ta germline . no 653 .
srip32214 chr13 88851194 88851194 - L1-Ta germline . no 653 .
srip32445 chr13 92855881 92855881 + L1-Ta germline . yes 653 GPC5
srip35373 chr14 30854669 30854669 + L1-Ta germline . no 653 .
srip36331 chr14 39875096 39875096 + L1-Ta germline validated no 653 FBXO33
srip36397 chr14 41197899 41197899 - L1-Ta germline . no 653 .
srip37998 chr14 71020049 71020049 + L1-Ta germline . no 653 .
srip40773 chr15 51875289 51875289 - L1-Ta germline . no 653 DMXL2
srip40831 chr15 53448042 53448042 - L1-Ta germline . no 653 .
srip41298 chr15 58012013 58012013 - L1-Ta germline . no 653 .
srip41741 chr15 62308185 62308185 + L1-Ta germline . no 653 VPS13C
srip41795 chr15 71027483 71027483 + L1-Ta germline . yes 653 UACA
srip42290 chr15 83551535 83551535 - L1-Ta germline . no 653 HOMER2
srip43281 chr15 100931158 100931158 - L1-Ta germline . no 653 .
srip43841 chr16 7925421 7925421 + L1-Ta germline . no 653 .
srip44159 chr16 18832538 18832538 - L1-Ta germline . no 653 SMG1
srip47232 chr17 28398312 28398312 + L1-Ta germline . no 653 EFCAB5
srip47416 chr17 29659591 29659591 - L1-Ta germline . no 653 NF1
srip47480 chr17 32192799 32192799 + L1-Ta germline . yes 653 ACCN1
srip47604 chr17 32813608 32813608 + L1-Ta germline . no 653 .
srip48701 chr18 5332408 5332408 - L1-Ta germline . no 653 .
srip49511 chr18 30185593 30185593 - L1-Ta germline . no 653 .
srip49728 chr18 34567457 34567457 + L1-Ta germline . yes 653 KIAA1328
srip49828 chr18 45192801 45192801 + L1-Ta germline . no 653 .
srip50769 chr18 51762741 51762741 - L1-Ta germline . no 653 .
srip51119 chr18 61030433 61030433 - L1-Ta germline . no 653 KDSR
srip51207 chr18 63446487 63446487 - L1-Ta germline . no 653 CDH7
srip51277 chr18 68413712 68413712 - L1-Ta germline . no 653 .
srip51347 chr18 69024727 69024727 + L1-Ta germline . yes 653 .
srip52494 chr19 55091547 55091547 - L1-Ta germline . no 653 LILRA2
srip54242 chr2 36570251 36570251 - L1-Ta germline . no 653 .
srip54369 chr2 41777137 41777137 - L1-Ta germline . no 653 .
srip55624 chr2 73354355 73354355 - L1-Ta germline . no 653 .
srip56292 chr2 83068216 83068216 + L1-Ta germline . yes 653 .
srip57387 chr2 118667183 118667183 - L1-Ta germline . no 653 .
srip57891 chr2 137156377 137156377 - L1-Ta germline . no 653 .
srip57961 chr2 139785112 139785112 - L1-Ta germline . no 653 .
srip58554 chr2 144010781 144010781 + L1-Ta germline . no 653 ARHGAP15
srip58634 chr2 144624534 144624534 + L1-Ta germline . yes 653 .
srip59451 chr2 153864262 153864262 - L1-Ta germline . no 653 .
srip59926 chr2 176346680 176346680 - L1-Ta germline . no 653 .
srip61310 chr2 205631655 205631655 - L1-Ta germline . no 653 PARD3B
srip61741 chr2 214647628 214647628 - L1-Ta germline . no 653 SPAG16
srip61809 chr2 218176494 218176494 + L1-Ta germline . yes 653 DIRC3
srip63282 chr20 12781652 12781652 - L1-Ta germline . no 653 .
srip63966 chr20 23412776 23412776 + L1-Ta germline . yes 653 .
srip64743 chr20 41952103 41952103 - L1-Ta germline . no 653 .
srip65149 chr20 51779972 51779972 - L1-Ta germline . yes 653 TSHZ2
srip66513 chr21 24125137 24125137 + L1-Ta germline . yes 653 .
srip66895 chr21 29069173 29069173 + L1-Ta germline . no 653 .
srip68223 chr22 29065287 29065287 + L1-Ta germline . yes 653 TTC28
srip69671 chr3 656444 656444 - L1-Ta germline validated no 653 .
srip69740 chr3 2050178 2050178 + L1-Ta germline . yes 653 .
srip70632 chr3 22097802 22097802 + L1-Ta germline . no 653 LOC100505836
srip70838 chr3 25740941 25740941 - L1-Ta germline . no 653 .
srip71356 chr3 33554072 33554072 + L1-Ta germline . no 653 CLASP2
srip72106 chr3 46824583 46824583 - L1-Ta germline . no 653 .
srip73342 chr3 59852889 59852889 + L1-Ta germline . no 653 FHIT
srip73566 chr3 75005137 75005137 + L1-Ta germline . no 653 .
srip74594 chr3 81770349 81770349 + L1-Ta germline . yes 653 GBE1
srip76475 chr3 105473860 105473860 - L1-Ta germline . no 653 CBLB
srip76569 chr3 108924737 108924737 + L1-Ta germline . yes 653 .
srip76770 chr3 116084880 116084880 + L1-Ta germline . no 653 LSAMP-AS1;LSAMP
srip77363 chr3 129972765 129972765 + L1-Ta germline . yes 653 COL6A4P2
srip77565 chr3 132664831 132664831 - L1-Ta germline . no 653 .
srip77778 chr3 136682446 136682446 - L1-Ta germline . no 653 IL20RB
srip77812 chr3 137073450 137073450 + L1-Ta germline . no 653 .
srip78919 chr3 154632590 154632590 + L1-Ta germline . yes 653 .
srip79215 chr3 158813156 158813156 - L1-Ta germline . yes 653 IQCJ;IQCJ-SCHIP1
srip80310 chr3 176091321 176091321 + L1-Ta germline . no 653 .
srip81592 chr3 187835306 187835306 - L1-Ta germline . no 653 .
srip82628 chr4 15849204 15849204 + L1-Ta germline . no 653 CD38
srip82696 chr4 16950725 16950725 + L1-Ta germline . yes 653 .
srip83288 chr4 19170950 19170950 + L1-Ta germline . no 653 .
srip83554 chr4 23622456 23622456 + L1-Ta germline . yes 653 .
srip83596 chr4 26929329 26929329 + L1-Ta germline . no 653 STIM2
srip84524 chr4 46058194 46058194 + L1-Ta germline . no 653 GABRG1
srip84661 chr4 47007779 47007779 - L1-Ta germline . no 653 .
srip84995 chr4 48738022 48738022 + L1-Ta germline . no 653 FRYL
srip85581 chr4 58428313 58428313 - L1-Ta germline . no 653 .
srip85857 chr4 59442445 59442445 - L1-Ta germline . no 653 .
srip87160 chr4 79032904 79032904 + L1-Ta germline . yes 653 FRAS1
srip87417 chr4 80864880 80864880 + L1-Ta germline . yes 653 ANTXR2
srip88060 chr4 88486275 88486275 + L1-Ta germline . yes 653 .
srip88339 chr4 99513572 99513572 - L1-Ta germline . no 653 TSPAN5
srip89274 chr4 107492188 107492188 - L1-Ta germline . no 653 .
srip90722 chr4 118765260 118765260 + L1-Ta germline . no 653 .
srip94454 chr4 170281916 170281916 - L1-Ta germline . no 653 .
srip94510 chr4 170436610 170436610 - L1-Ta germline . no 653 NEK1
srip95100 chr4 182695155 182695155 - L1-Ta germline . no 653 .
srip95732 chr5 7603653 7603653 - L1-Ta germline . no 653 ADCY2
srip96396 chr5 12197468 12197468 - L1-Ta germline . yes 653 .
srip97780 chr5 33633345 33633345 - L1-Ta germline . no 653 ADAMTS12
srip98129 chr5 34153955 34153955 + L1-Ta germline . yes 653 .
srip98827 chr5 51488295 51488295 - L1-Ta germline . no 653 .
srip99529 chr5 68263470 68263470 - L1-Ta germline . no 653 .
srip101435 chr5 99981611 99981611 + L1-Ta germline . yes 653 .
srip102226 chr5 109480258 109480258 - L1-Ta germline validated no 653 .
srip102574 chr5 110474800 110474800 + L1-Ta germline . yes 653 .
srip102812 chr5 118941211 118941211 + L1-Ta germline . no 653 .
srip103291 chr5 125040040 125040040 + L1-Ta germline . no 653 .
srip103924 chr5 138420464 138420464 + L1-Ta germline . yes 653 SIL1
srip104254 chr5 144473640 144473640 + L1-Ta germline . no 653 .
srip104577 chr5 151462442 151462442 + L1-Ta germline . no 653 .
srip104920 chr5 155488954 155488954 - L1-Ta germline . yes 653 .
srip105537 chr5 159351193 159351193 - L1-Ta germline . no 653 ADRA1B
srip105869 chr5 165848548 165848548 + L1-Ta germline . yes 653 .
srip106048 chr5 172829796 172829796 - L1-Ta germline . no 653 .
srip107680 chr6 18910854 18910854 - L1-Ta germline . no 653 .
srip110420 chr6 74865444 74865444 - L1-Ta germline . no 653 .
srip111362 chr6 84049691 84049691 + L1-Ta germline . yes 653 ME1
srip112010 chr6 91669505 91669505 - L1-Ta germline . no 653 .
srip112920 chr6 113030984 113030984 + L1-Ta germline . no 653 LOC100287612
srip113575 chr6 136712687 136712687 + L1-Ta germline . yes 653 MAP7
srip116231 chr7 11561087 11561087 - L1-Ta germline . no 653 THSD7A
srip116655 chr7 28783416 28783416 - L1-Ta germline . no 653 CREB5
srip116720 chr7 30484894 30484894 + L1-Ta germline . no 653 NOD1
srip117105 chr7 45733735 45733735 + L1-Ta germline . no 653 ADCY1
srip118564 chr7 69668336 69668336 + L1-Ta germline . yes 653 AUTS2
srip118620 chr7 69828469 69828469 + L1-Ta germline . no 653 AUTS2
srip118900 chr7 70188687 70188687 - L1-Ta germline . no 653 AUTS2
srip119657 chr7 84901721 84901721 - L1-Ta germline . no 653 .
srip121439 chr7 107829247 107829247 + L1-Ta germline . no 653 NRCAM
srip122324 chr7 111609264 111609264 + L1-Ta germline . yes 653 DOCK4
srip122957 chr7 127930833 127930833 - L1-Ta germline . no 653 .
srip123006 chr7 129507566 129507566 + L1-Ta germline . no 653 UBE2H
srip123064 chr7 130386823 130386823 - L1-Ta germline . no 653 .
srip123198 chr7 141620449 141620449 - L1-Ta germline . no 653 .
srip123453 chr7 145063368 145063368 + L1-Ta germline . yes 653 .
srip124782 chr8 9597567 9597567 + L1-Ta germline . yes 653 TNKS
srip128506 chr8 97911008 97911008 + L1-Ta germline . yes 653 PGCP
srip128920 chr8 114072203 114072203 - L1-Ta germline . no 653 CSMD3
srip130407 chr8 137450317 137450317 - L1-Ta germline . yes 653 .
srip131626 chr9 10137698 10137698 + L1-Ta germline . yes 653 PTPRD
srip133203 chr9 32463884 32463884 - L1-Ta germline . no 653 DDX58
srip134110 chr9 80014129 80014129 + L1-Ta germline . no 653 VPS13A
srip134290 chr9 86065262 86065262 - L1-Ta germline . no 653 FRMD3
srip134577 chr9 98465870 98465870 + L1-Ta germline . yes 653 .
srip134739 chr9 102615582 102615582 - L1-Ta germline . no 653 NR4A3
srip134796 chr9 103749297 103749297 + L1-Ta germline . no 653 .
srip134829 chr9 104443975 104443975 - L1-Ta germline . no 653 GRIN3A
srip135109 chr9 105162482 105162482 - L1-Ta germline . no 653 .
srip136338 chrX 11731399 11731399 + L1-Ta germline . yes 653 .
srip136508 chrX 14152010 14152010 - L1-Ta germline validated no 653 .
srip136892 chrX 34837319 34837319 - L1-Ta germline . no 653 .
srip137013 chrX 49731196 49731196 - L1-Ta germline . no 653 CLCN5
srip137050 chrX 49784005 49784005 - L1-Ta germline . no 653 CLCN5
srip137988 chrX 63233094 63233094 - L1-Ta germline . no 653 .
srip138365 chrX 67263241 67263241 + L1-Ta germline . no 653 OPHN1
srip138478 chrX 72606851 72606851 + L1-Ta germline . no 653 .
srip138738 chrX 75543182 75543182 - L1-Ta germline . no 653 .
srip139028 chrX 75949601 75949601 + L1-Ta germline . no 653 .
srip139109 chrX 77696853 77696853 - L1-Ta germline . no 653 .
srip139285 chrX 84028703 84028703 - L1-Ta germline . no 653 .
srip140157 chrX 105718545 105718545 + L1-Ta germline . yes 653 .
srip140614 chrX 118569413 118569413 - L1-Ta germline . no 653 SLC25A43
srip140838 chrX 120397638 120397638 - L1-Ta germline . no 653 .
srip141434 chrX 130140534 130140534 + L1-Ta germline . no 653 .
srip141613 chrX 137146500 137146500 + L1-Ta germline . no 653 .
srip142122 chrX 154745667 154745667 - L1-Ta germline . no 653 TMLHE