euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

185 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip51 chr1 12875996 12875996 - L1-Ta germline . no 652 .
srip183 chr1 31041664 31041664 + L1-Ta germline . no 652 .
srip1630 chr1 74984526 74984526 - L1-Ta germline . no 652 FPGT-TNNI3K;TNNI3K
srip1679 chr1 75192713 75192713 - L1-Ta germline . no 652 CRYZ
srip2049 chr1 83127611 83127611 + L1-Ta germline . no 652 .
srip2136 chr1 86398798 86398798 + L1-Ta germline . no 652 COL24A1
srip2189 chr1 86741680 86741680 + L1-Ta germline . yes 652 .
srip2223 chr1 87144762 87144762 - L1-Ta germline . no 652 .
srip3231 chr1 105386449 105386449 - L1-Ta germline . no 652 .
srip3959 chr1 121478354 121478354 + L1-Ta germline . yes 652 .
srip4085 chr1 149308424 149308424 + L1-Ta germline . no 652 LOC645262
srip4192 chr1 152462236 152462236 - L1-Ta germline . no 652 .
srip4275 chr1 158238664 158238664 + L1-Ta germline . yes 652 .
srip4557 chr1 163231881 163231881 - L1-Ta germline . no 652 LOC100505773
srip4792 chr1 165940104 165940104 - L1-Ta germline . yes 652 .
srip5513 chr1 180668321 180668321 - L1-Ta germline . no 652 XPR1
srip6121 chr1 193836827 193836827 + L1-Ta germline . yes 652 .
srip7034 chr1 228058514 228058514 - L1-Ta germline . yes 652 .
srip8119 chr10 23842056 23842056 - L1-Ta germline . no 652 .
srip8700 chr10 32929792 32929792 - L1-Ta germline . no 652 C10orf68
srip8960 chr10 58863547 58863547 - L1-Ta germline . no 652 .
srip10777 chr10 107137008 107137008 - L1-Ta germline . no 652 .
srip11274 chr10 110846814 110846814 + L1-Ta germline . yes 652 .
srip12605 chr11 15995864 15995864 - L1-Ta germline . no 652 SOX6
srip12697 chr11 24355519 24355519 + L1-Ta germline . yes 652 .
srip14572 chr11 46606105 46606105 + L1-Ta germline . no 652 AMBRA1
srip15519 chr11 59815986 59815986 - L1-Ta germline . no 652 .
srip17224 chr11 94684419 94684419 + L1-Ta germline . no 652 .
srip17381 chr11 99478828 99478828 + L1-Ta germline . yes 652 CNTN5
srip20285 chr12 14335361 14335361 + L1-Ta germline . yes 652 .
srip22448 chr12 44501995 44501995 - L1-Ta germline . yes 652 TMEM117
srip23400 chr12 70167057 70167057 - L1-Ta germline . no 652 RAB3IP
srip24044 chr12 79570815 79570815 - L1-Ta germline . no 652 SYT1
srip25279 chr12 98672913 98672913 + L1-Ta germline . yes 652 .
srip25350 chr12 102842494 102842494 + L1-Ta germline . no 652 IGF1
srip27585 chr13 33441812 33441812 - L1-Ta germline . no 652 .
srip28359 chr13 57793451 57793451 - L1-Ta germline . no 652 .
srip28466 chr13 59088395 59088395 + L1-Ta germline . no 652 .
srip28689 chr13 61462318 61462318 - L1-Ta germline . no 652 .
srip30323 chr13 72968674 72968674 + L1-Ta germline . no 652 .
srip32049 chr13 86502081 86502081 + L1-Ta germline . no 652 .
srip32213 chr13 88851194 88851194 - L1-Ta germline . no 652 .
srip32444 chr13 92855881 92855881 + L1-Ta germline . yes 652 GPC5
srip33687 chr13 104704163 104704163 + L1-Ta germline . yes 652 .
srip35372 chr14 30854669 30854669 + L1-Ta germline . no 652 .
srip37016 chr14 48662336 48662336 + L1-Ta germline . no 652 .
srip37997 chr14 71020049 71020049 + L1-Ta germline . no 652 .
srip38883 chr14 95605326 95605326 + L1-Ta germline . no 652 DICER1
srip38969 chr15 20022208 20022208 - L1-Ta germline . no 652 .
srip40772 chr15 51875289 51875289 - L1-Ta germline . no 652 DMXL2
srip41740 chr15 62308185 62308185 + L1-Ta germline . no 652 VPS13C
srip43280 chr15 100931158 100931158 - L1-Ta germline . no 652 .
srip43840 chr16 7925421 7925421 + L1-Ta germline . no 652 .
srip44158 chr16 18832538 18832538 - L1-Ta germline . no 652 SMG1
srip45825 chr16 61079187 61079187 + L1-Ta germline . no 652 .
srip45930 chr16 65729907 65729907 + L1-Ta germline . yes 652 .
srip47415 chr17 29659591 29659591 - L1-Ta germline . no 652 NF1
srip47479 chr17 32192799 32192799 + L1-Ta germline . yes 652 ACCN1
srip48700 chr18 5332408 5332408 - L1-Ta germline . no 652 .
srip49510 chr18 30185593 30185593 - L1-Ta germline . no 652 .
srip50861 chr18 58172211 58172211 - L1-Ta germline . no 652 .
srip51042 chr18 59763726 59763726 - L1-Ta germline . no 652 PIGN
srip51118 chr18 61030433 61030433 - L1-Ta germline . no 652 KDSR
srip51206 chr18 63446487 63446487 - L1-Ta germline . no 652 CDH7
srip51276 chr18 68413712 68413712 - L1-Ta germline . no 652 .
srip51346 chr18 69024727 69024727 + L1-Ta germline . yes 652 .
srip51395 chr18 69617341 69617341 + L1-Ta germline . no 652 .
srip52493 chr19 55091547 55091547 - L1-Ta germline . no 652 LILRA2
srip55326 chr2 71638563 71638563 - L1-Ta germline . no 652 ZNF638
srip55623 chr2 73354355 73354355 - L1-Ta germline . no 652 .
srip56567 chr2 88206937 88206937 + L1-Ta germline . yes 652 .
srip56982 chr2 108631988 108631988 - L1-Ta germline . no 652 .
srip57960 chr2 139785112 139785112 - L1-Ta germline . no 652 .
srip58345 chr2 142788891 142788891 - L1-Ta germline . no 652 LRP1B
srip59450 chr2 153864262 153864262 - L1-Ta germline . no 652 .
srip59823 chr2 170111155 170111155 + L1-Ta germline . yes 652 LRP2
srip61309 chr2 205631655 205631655 - L1-Ta germline . no 652 PARD3B
srip61808 chr2 218176494 218176494 + L1-Ta germline . yes 652 DIRC3
srip63965 chr20 23412776 23412776 + L1-Ta germline . yes 652 .
srip64742 chr20 41952103 41952103 - L1-Ta germline . no 652 .
srip67897 chr22 28455877 28455877 - L1-Ta germline . no 652 TTC28
srip69670 chr3 656444 656444 - L1-Ta germline validated no 652 .
srip69739 chr3 2050178 2050178 + L1-Ta germline . yes 652 .
srip69862 chr3 4080917 4080917 - L1-Ta germline . yes 652 .
srip70837 chr3 25740941 25740941 - L1-Ta germline . no 652 .
srip70893 chr3 26439488 26439488 - L1-Ta germline . no 652 .
srip71355 chr3 33554072 33554072 + L1-Ta germline . no 652 CLASP2
srip72105 chr3 46824583 46824583 - L1-Ta germline . no 652 .
srip76474 chr3 105473860 105473860 - L1-Ta germline . no 652 CBLB
srip76648 chr3 109836400 109836400 - L1-Ta germline . no 652 .
srip76769 chr3 116084880 116084880 + L1-Ta germline . no 652 LSAMP-AS1;LSAMP
srip76889 chr3 121120741 121120741 + L1-Ta germline . yes 652 STXBP5L
srip77362 chr3 129972765 129972765 + L1-Ta germline . yes 652 COL6A4P2
srip77564 chr3 132664831 132664831 - L1-Ta germline . no 652 .
srip78869 chr3 152701320 152701320 + L1-Ta germline . no 652 .
srip78918 chr3 154632590 154632590 + L1-Ta germline . yes 652 .
srip79214 chr3 158813156 158813156 - L1-Ta germline . yes 652 IQCJ;IQCJ-SCHIP1
srip79955 chr3 172749131 172749131 - L1-Ta germline . no 652 SPATA16
srip80309 chr3 176091321 176091321 + L1-Ta germline . no 652 .
srip80911 chr3 182952475 182952475 - L1-Ta germline . no 652 MCF2L2
srip81379 chr3 186372123 186372123 + L1-Ta germline . no 652 .
srip81591 chr3 187835306 187835306 - L1-Ta germline . no 652 .
srip82331 chr4 7995690 7995690 - L1-Ta germline . no 652 ABLIM2
srip82627 chr4 15849204 15849204 + L1-Ta germline . no 652 CD38
srip82695 chr4 16950725 16950725 + L1-Ta germline . yes 652 .
srip83287 chr4 19170950 19170950 + L1-Ta germline . no 652 .
srip83595 chr4 26929329 26929329 + L1-Ta germline . no 652 STIM2
srip84553 chr4 46799112 46799112 + L1-Ta germline . yes 652 COX7B2
srip84994 chr4 48738022 48738022 + L1-Ta germline . no 652 FRYL
srip85856 chr4 59442445 59442445 - L1-Ta germline . no 652 .
srip86321 chr4 66809073 66809073 - L1-Ta germline . no 652 .
srip87073 chr4 71200089 71200089 + L1-Ta germline . no 652 .
srip87159 chr4 79032904 79032904 + L1-Ta germline . yes 652 FRAS1
srip87416 chr4 80864880 80864880 + L1-Ta germline . yes 652 ANTXR2
srip87466 chr4 80894074 80894074 + L1-Ta germline . yes 652 ANTXR2
srip89273 chr4 107492188 107492188 - L1-Ta germline . no 652 .
srip90832 chr4 120869874 120869874 - L1-Ta germline . no 652 .
srip92301 chr4 136006539 136006539 + L1-Ta germline . no 652 .
srip94453 chr4 170281916 170281916 - L1-Ta germline . no 652 .
srip94509 chr4 170436610 170436610 - L1-Ta germline . no 652 NEK1
srip96395 chr5 12197468 12197468 - L1-Ta germline . yes 652 .
srip96849 chr5 20644380 20644380 - L1-Ta germline . no 652 .
srip97779 chr5 33633345 33633345 - L1-Ta germline . no 652 ADAMTS12
srip98128 chr5 34153955 34153955 + L1-Ta germline . yes 652 .
srip98826 chr5 51488295 51488295 - L1-Ta germline . no 652 .
srip101434 chr5 99981611 99981611 + L1-Ta germline . yes 652 .
srip101647 chr5 105935364 105935364 + L1-Ta germline validated no 652 .
srip102573 chr5 110474800 110474800 + L1-Ta germline . yes 652 .
srip102811 chr5 118941211 118941211 + L1-Ta germline . no 652 .
srip103923 chr5 138420464 138420464 + L1-Ta germline . yes 652 SIL1
srip104253 chr5 144473640 144473640 + L1-Ta germline . no 652 .
srip104919 chr5 155488954 155488954 - L1-Ta germline . yes 652 .
srip105138 chr5 155619862 155619862 + L1-Ta germline . no 652 .
srip106047 chr5 172829796 172829796 - L1-Ta germline . no 652 .
srip106618 chr6 2418002 2418002 - L1-Ta germline . no 652 .
srip107679 chr6 18910854 18910854 - L1-Ta germline . no 652 .
srip108200 chr6 39645329 39645329 - L1-Ta germline . yes 652 KIF6
srip108744 chr6 48868435 48868435 - L1-Ta germline . no 652 .
srip108865 chr6 55594843 55594843 - L1-Ta germline . no 652 .
srip109842 chr6 66787597 66787597 - L1-Ta germline . no 652 .
srip110137 chr6 70726265 70726265 + L1-Ta germline . yes 652 COL19A1
srip110364 chr6 73995229 73995229 - L1-Ta germline . no 652 C6orf147
srip110891 chr6 77980636 77980636 - L1-Ta germline . no 652 .
srip112919 chr6 113030984 113030984 + L1-Ta germline . no 652 LOC100287612
srip113519 chr6 133341827 133341827 - L1-Ta germline . no 652 .
srip113574 chr6 136712687 136712687 + L1-Ta germline . yes 652 MAP7
srip115207 chr6 160829673 160829673 - L1-Ta germline . no 652 SLC22A3
srip116531 chr7 25081462 25081462 - L1-Ta germline . no 652 .
srip116654 chr7 28783416 28783416 - L1-Ta germline . no 652 CREB5
srip116719 chr7 30484894 30484894 + L1-Ta germline . no 652 NOD1
srip117104 chr7 45733735 45733735 + L1-Ta germline . no 652 ADCY1
srip118563 chr7 69668336 69668336 + L1-Ta germline . yes 652 AUTS2
srip118936 chr7 75335791 75335791 - L1-Ta germline . no 652 HIP1
srip122070 chr7 109548699 109548699 + L1-Ta germline . no 652 .
srip123005 chr7 129507566 129507566 + L1-Ta germline . no 652 UBE2H
srip123197 chr7 141620449 141620449 - L1-Ta germline . no 652 .
srip123452 chr7 145063368 145063368 + L1-Ta germline . yes 652 .
srip123673 chr7 147539649 147539649 - L1-Ta germline . no 652 CNTNAP2
srip123706 chr7 154155053 154155053 + L1-Ta germline . yes 652 DPP6
srip124343 chr8 5829277 5829277 - L1-Ta germline . no 652 .
srip125003 chr8 18768149 18768149 + L1-Ta germline . yes 652 PSD3
srip125637 chr8 28977684 28977684 - L1-Ta germline . no 652 KIF13B
srip128659 chr8 100233000 100233000 - L1-Ta germline . no 652 VPS13B
srip128919 chr8 114072203 114072203 - L1-Ta germline . no 652 CSMD3
srip130406 chr8 137450317 137450317 - L1-Ta germline . yes 652 .
srip131625 chr9 10137698 10137698 + L1-Ta germline . yes 652 PTPRD
srip131898 chr9 28111894 28111894 - L1-Ta germline . yes 652 LINGO2
srip133202 chr9 32463884 32463884 - L1-Ta germline . no 652 DDX58
srip134109 chr9 80014129 80014129 + L1-Ta germline . no 652 VPS13A
srip134289 chr9 86065262 86065262 - L1-Ta germline . no 652 FRMD3
srip134375 chr9 92917935 92917935 + L1-Ta germline . yes 652 .
srip134576 chr9 98465870 98465870 + L1-Ta germline . yes 652 .
srip134738 chr9 102615582 102615582 - L1-Ta germline . no 652 NR4A3
srip135215 chr9 106501597 106501597 - L1-Ta germline . no 652 .
srip136337 chrX 11731399 11731399 + L1-Ta germline . yes 652 .
srip136958 chrX 45449426 45449426 + L1-Ta germline . no 652 .
srip137049 chrX 49784005 49784005 - L1-Ta germline . no 652 CLCN5
srip137987 chrX 63233094 63233094 - L1-Ta germline . no 652 .
srip138284 chrX 64430988 64430988 + L1-Ta germline . no 652 .
srip139334 chrX 85609830 85609830 + L1-Ta germline . yes 652 DACH2
srip139516 chrX 94857127 94857127 + L1-Ta germline . yes 652 .
srip140613 chrX 118569413 118569413 - L1-Ta germline . no 652 SLC25A43
srip141612 chrX 137146500 137146500 + L1-Ta germline . no 652 .
srip142121 chrX 154745667 154745667 - L1-Ta germline . no 652 TMLHE
srip142447 chrY 19486845 19486845 - L1-Ta germline . no 652 .