euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

215 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip182 chr1 31041664 31041664 + L1-Ta germline . no 651 .
srip334 chr1 41201714 41201714 - L1-Ta germline . no 651 NFYC
srip535 chr1 42483962 42483962 + L1-Ta germline . no 651 HIVEP3
srip906 chr1 56834937 56834937 + L1-Ta germline . yes 651 .
srip2048 chr1 83127611 83127611 + L1-Ta germline . no 651 .
srip2135 chr1 86398798 86398798 + L1-Ta germline . no 651 COL24A1
srip2222 chr1 87144762 87144762 - L1-Ta germline . no 651 .
srip2580 chr1 99678977 99678977 - L1-Ta germline . no 651 .
srip2822 chr1 101978990 101978990 - L1-Ta germline . no 651 .
srip3230 chr1 105386449 105386449 - L1-Ta germline . no 651 .
srip3958 chr1 121478354 121478354 + L1-Ta germline . yes 651 .
srip4084 chr1 149308424 149308424 + L1-Ta germline . no 651 LOC645262
srip4191 chr1 152462236 152462236 - L1-Ta germline . no 651 .
srip4274 chr1 158238664 158238664 + L1-Ta germline . yes 651 .
srip4556 chr1 163231881 163231881 - L1-Ta germline . no 651 LOC100505773
srip6120 chr1 193836827 193836827 + L1-Ta germline . yes 651 .
srip7033 chr1 228058514 228058514 - L1-Ta germline . yes 651 .
srip7596 chr10 5293335 5293335 + L1-Ta germline . yes 651 .
srip8118 chr10 23842056 23842056 - L1-Ta germline . no 651 .
srip8699 chr10 32929792 32929792 - L1-Ta germline . no 651 C10orf68
srip8748 chr10 33799704 33799704 - L1-Ta germline . no 651 .
srip8959 chr10 58863547 58863547 - L1-Ta germline . no 651 .
srip9713 chr10 78351510 78351510 + L1-Ta germline . yes 651 .
srip10051 chr10 87121396 87121396 + L1-Ta germline . no 651 .
srip10776 chr10 107137008 107137008 - L1-Ta germline . no 651 .
srip11226 chr10 110453665 110453665 + L1-Ta germline . no 651 .
srip11273 chr10 110846814 110846814 + L1-Ta germline . yes 651 .
srip12604 chr11 15995864 15995864 - L1-Ta germline . no 651 SOX6
srip12696 chr11 24355519 24355519 + L1-Ta germline . yes 651 .
srip14837 chr11 48755930 48755930 + L1-Ta germline . no 651 .
srip15518 chr11 59815986 59815986 - L1-Ta germline . no 651 .
srip16849 chr11 92875927 92875927 + L1-Ta germline . no 651 .
srip17258 chr11 95175423 95175423 + L1-Ta germline . no 651 .
srip17380 chr11 99478828 99478828 + L1-Ta germline . yes 651 CNTN5
srip20284 chr12 14335361 14335361 + L1-Ta germline . yes 651 .
srip22447 chr12 44501995 44501995 - L1-Ta germline . yes 651 TMEM117
srip27584 chr13 33441812 33441812 - L1-Ta germline . no 651 .
srip28465 chr13 59088395 59088395 + L1-Ta germline . no 651 .
srip28688 chr13 61462318 61462318 - L1-Ta germline . no 651 .
srip30322 chr13 72968674 72968674 + L1-Ta germline . no 651 .
srip32048 chr13 86502081 86502081 + L1-Ta germline . no 651 .
srip32212 chr13 88851194 88851194 - L1-Ta germline . no 651 .
srip32407 chr13 91626302 91626302 + L1-Ta germline . no 651 .
srip33686 chr13 104704163 104704163 + L1-Ta germline . yes 651 .
srip34461 chr14 24992914 24992914 - L1-Ta germline . no 651 .
srip35327 chr14 30525248 30525248 + L1-Ta germline . no 651 .
srip35371 chr14 30854669 30854669 + L1-Ta germline . no 651 .
srip37996 chr14 71020049 71020049 + L1-Ta germline . no 651 .
srip38128 chr14 71197779 71197779 + L1-Ta germline validated no 651 MAP3K9
srip38882 chr14 95605326 95605326 + L1-Ta germline . no 651 DICER1
srip38968 chr15 20022208 20022208 - L1-Ta germline . no 651 .
srip40771 chr15 51875289 51875289 - L1-Ta germline . no 651 DMXL2
srip40830 chr15 53448042 53448042 - L1-Ta germline . no 651 .
srip41297 chr15 58012013 58012013 - L1-Ta germline . no 651 .
srip41794 chr15 71027483 71027483 + L1-Ta germline . yes 651 UACA
srip42289 chr15 83551535 83551535 - L1-Ta germline . no 651 HOMER2
srip43279 chr15 100931158 100931158 - L1-Ta germline . no 651 .
srip43839 chr16 7925421 7925421 + L1-Ta germline . no 651 .
srip45824 chr16 61079187 61079187 + L1-Ta germline . no 651 .
srip45929 chr16 65729907 65729907 + L1-Ta germline . yes 651 .
srip47414 chr17 29659591 29659591 - L1-Ta germline . no 651 NF1
srip47478 chr17 32192799 32192799 + L1-Ta germline . yes 651 ACCN1
srip47603 chr17 32813608 32813608 + L1-Ta germline . no 651 .
srip48699 chr18 5332408 5332408 - L1-Ta germline . no 651 .
srip49046 chr18 23067399 23067399 + L1-Ta germline . no 651 .
srip49509 chr18 30185593 30185593 - L1-Ta germline . no 651 .
srip49727 chr18 34567457 34567457 + L1-Ta germline . yes 651 KIAA1328
srip50768 chr18 51762741 51762741 - L1-Ta germline . no 651 .
srip51041 chr18 59763726 59763726 - L1-Ta germline . no 651 PIGN
srip51205 chr18 63446487 63446487 - L1-Ta germline . no 651 CDH7
srip51251 chr18 68352375 68352375 - L1-Ta germline . no 651 .
srip51275 chr18 68413712 68413712 - L1-Ta germline . no 651 .
srip51345 chr18 69024727 69024727 + L1-Ta germline . yes 651 .
srip51394 chr18 69617341 69617341 + L1-Ta germline . no 651 .
srip52492 chr19 55091547 55091547 - L1-Ta germline . no 651 LILRA2
srip54368 chr2 41777137 41777137 - L1-Ta germline . no 651 .
srip55622 chr2 73354355 73354355 - L1-Ta germline . no 651 .
srip56291 chr2 83068216 83068216 + L1-Ta germline . yes 651 .
srip56981 chr2 108631988 108631988 - L1-Ta germline . no 651 .
srip57323 chr2 116246475 116246475 + L1-Ta germline . no 651 DPP10
srip57386 chr2 118667183 118667183 - L1-Ta germline . no 651 .
srip57602 chr2 126510571 126510571 + L1-Ta germline . yes 651 .
srip57772 chr2 130439851 130439851 - L1-Ta germline . no 651 .
srip58344 chr2 142788891 142788891 - L1-Ta germline . no 651 LRP1B
srip58633 chr2 144624534 144624534 + L1-Ta germline . yes 651 .
srip59822 chr2 170111155 170111155 + L1-Ta germline . yes 651 LRP2
srip59925 chr2 176346680 176346680 - L1-Ta germline . no 651 .
srip60761 chr2 191478703 191478703 - L1-Ta germline . no 651 .
srip61308 chr2 205631655 205631655 - L1-Ta germline . no 651 PARD3B
srip61740 chr2 214647628 214647628 - L1-Ta germline . no 651 SPAG16
srip61807 chr2 218176494 218176494 + L1-Ta germline . yes 651 DIRC3
srip63281 chr20 12781652 12781652 - L1-Ta germline . no 651 .
srip63964 chr20 23412776 23412776 + L1-Ta germline . yes 651 .
srip64741 chr20 41952103 41952103 - L1-Ta germline . no 651 .
srip65148 chr20 51779972 51779972 - L1-Ta germline . yes 651 TSHZ2
srip65202 chr20 54441220 54441220 + L1-Ta germline . no 651 .
srip65581 chr21 16257637 16257637 + L1-Ta germline validated no 651 .
srip66512 chr21 24125137 24125137 + L1-Ta germline . yes 651 .
srip67732 chr22 22715585 22715585 + L1-Ta germline . no 651 IGL@
srip67896 chr22 28455877 28455877 - L1-Ta germline . no 651 TTC28
srip68778 chr22 44324601 44324601 - L1-Ta germline . no 651 PNPLA3
srip69669 chr3 656444 656444 - L1-Ta germline validated no 651 .
srip69861 chr3 4080917 4080917 - L1-Ta germline . yes 651 .
srip71192 chr3 27135216 27135216 + L1-Ta germline . no 651 .
srip71354 chr3 33554072 33554072 + L1-Ta germline . no 651 CLASP2
srip71987 chr3 41821477 41821477 + L1-Ta germline . yes 651 ULK4
srip72104 chr3 46824583 46824583 - L1-Ta germline . no 651 .
srip74593 chr3 81770349 81770349 + L1-Ta germline . yes 651 GBE1
srip76473 chr3 105473860 105473860 - L1-Ta germline . no 651 CBLB
srip76568 chr3 108924737 108924737 + L1-Ta germline . yes 651 .
srip76647 chr3 109836400 109836400 - L1-Ta germline . no 651 .
srip76768 chr3 116084880 116084880 + L1-Ta germline . no 651 LSAMP-AS1;LSAMP
srip76888 chr3 121120741 121120741 + L1-Ta germline . yes 651 STXBP5L
srip77361 chr3 129972765 129972765 + L1-Ta germline . yes 651 COL6A4P2
srip77425 chr3 130352893 130352893 + L1-Ta germline . yes 651 COL6A6
srip77563 chr3 132664831 132664831 - L1-Ta germline . no 651 .
srip77811 chr3 137073450 137073450 + L1-Ta germline . no 651 .
srip78917 chr3 154632590 154632590 + L1-Ta germline . yes 651 .
srip79213 chr3 158813156 158813156 - L1-Ta germline . yes 651 IQCJ;IQCJ-SCHIP1
srip79954 chr3 172749131 172749131 - L1-Ta germline . no 651 SPATA16
srip80879 chr3 181192904 181192904 + L1-Ta germline . no 651 .
srip80910 chr3 182952475 182952475 - L1-Ta germline . no 651 MCF2L2
srip81590 chr3 187835306 187835306 - L1-Ta germline . no 651 .
srip83286 chr4 19170950 19170950 + L1-Ta germline . no 651 .
srip83594 chr4 26929329 26929329 + L1-Ta germline . no 651 STIM2
srip84601 chr4 46883027 46883027 + L1-Ta germline . no 651 .
srip84660 chr4 47007779 47007779 - L1-Ta germline . no 651 .
srip84993 chr4 48738022 48738022 + L1-Ta germline . no 651 FRYL
srip85618 chr4 58888335 58888335 + L1-Ta germline . no 651 .
srip85855 chr4 59442445 59442445 - L1-Ta germline . no 651 .
srip86320 chr4 66809073 66809073 - L1-Ta germline . no 651 .
srip87072 chr4 71200089 71200089 + L1-Ta germline . no 651 .
srip87415 chr4 80864880 80864880 + L1-Ta germline . yes 651 ANTXR2
srip87729 chr4 82931377 82931377 + L1-Ta germline . yes 651 .
srip88338 chr4 99513572 99513572 - L1-Ta germline . no 651 TSPAN5
srip89272 chr4 107492188 107492188 - L1-Ta germline . no 651 .
srip90315 chr4 115132696 115132696 + L1-Ta germline . no 651 .
srip90831 chr4 120869874 120869874 - L1-Ta germline . no 651 .
srip91168 chr4 127596258 127596258 + L1-Ta germline . no 651 .
srip92236 chr4 134596424 134596424 + L1-Ta germline . no 651 .
srip92300 chr4 136006539 136006539 + L1-Ta germline . no 651 .
srip93160 chr4 147543284 147543284 + L1-Ta germline . no 651 .
srip94135 chr4 167369021 167369021 - L1-Ta germline . no 651 .
srip94452 chr4 170281916 170281916 - L1-Ta germline . no 651 .
srip94508 chr4 170436610 170436610 - L1-Ta germline . no 651 NEK1
srip95099 chr4 182695155 182695155 - L1-Ta germline . no 651 .
srip97778 chr5 33633345 33633345 - L1-Ta germline . no 651 ADAMTS12
srip98127 chr5 34153955 34153955 + L1-Ta germline . yes 651 .
srip98825 chr5 51488295 51488295 - L1-Ta germline . no 651 .
srip101433 chr5 99981611 99981611 + L1-Ta germline . yes 651 .
srip101517 chr5 105483500 105483500 - L1-Ta germline . no 651 .
srip102572 chr5 110474800 110474800 + L1-Ta germline . yes 651 .
srip102790 chr5 117009526 117009526 + L1-Ta germline validated no 651 .
srip102810 chr5 118941211 118941211 + L1-Ta germline . no 651 .
srip103007 chr5 124907258 124907258 + L1-Ta germline . yes 651 .
srip103922 chr5 138420464 138420464 + L1-Ta germline . yes 651 SIL1
srip104252 chr5 144473640 144473640 + L1-Ta germline . no 651 .
srip105137 chr5 155619862 155619862 + L1-Ta germline . no 651 .
srip105536 chr5 159351193 159351193 - L1-Ta germline . no 651 ADRA1B
srip106046 chr5 172829796 172829796 - L1-Ta germline . no 651 .
srip106617 chr6 2418002 2418002 - L1-Ta germline . no 651 .
srip107678 chr6 18910854 18910854 - L1-Ta germline . no 651 .
srip108199 chr6 39645329 39645329 - L1-Ta germline . yes 651 KIF6
srip108743 chr6 48868435 48868435 - L1-Ta germline . no 651 .
srip108864 chr6 55594843 55594843 - L1-Ta germline . no 651 .
srip109841 chr6 66787597 66787597 - L1-Ta germline . no 651 .
srip109888 chr6 67313668 67313668 + L1-Ta germline . yes 651 .
srip110363 chr6 73995229 73995229 - L1-Ta germline . no 651 C6orf147
srip110890 chr6 77980636 77980636 - L1-Ta germline . no 651 .
srip112009 chr6 91669505 91669505 - L1-Ta germline . no 651 .
srip112918 chr6 113030984 113030984 + L1-Ta germline . no 651 LOC100287612
srip113573 chr6 136712687 136712687 + L1-Ta germline . yes 651 MAP7
srip115434 chr6 162181256 162181256 + L1-Ta germline . no 651 PARK2
srip116530 chr7 25081462 25081462 - L1-Ta germline . no 651 .
srip116653 chr7 28783416 28783416 - L1-Ta germline . no 651 CREB5
srip116718 chr7 30484894 30484894 + L1-Ta germline . no 651 NOD1
srip118562 chr7 69668336 69668336 + L1-Ta germline . yes 651 AUTS2
srip119656 chr7 84901721 84901721 - L1-Ta germline . no 651 .
srip120437 chr7 89704574 89704574 + L1-Ta germline . no 651 .
srip122069 chr7 109548699 109548699 + L1-Ta germline . no 651 .
srip122323 chr7 111609264 111609264 + L1-Ta germline . yes 651 DOCK4
srip123004 chr7 129507566 129507566 + L1-Ta germline . no 651 UBE2H
srip123063 chr7 130386823 130386823 - L1-Ta germline . no 651 .
srip123196 chr7 141620449 141620449 - L1-Ta germline . no 651 .
srip124342 chr8 5829277 5829277 - L1-Ta germline . no 651 .
srip124781 chr8 9597567 9597567 + L1-Ta germline . yes 651 TNKS
srip125002 chr8 18768149 18768149 + L1-Ta germline . yes 651 PSD3
srip126977 chr8 71583563 71583563 - L1-Ta germline . no 651 XKR9
srip127539 chr8 75723721 75723721 + L1-Ta germline . no 651 .
srip128505 chr8 97911008 97911008 + L1-Ta germline . yes 651 PGCP
srip128918 chr8 114072203 114072203 - L1-Ta germline . no 651 CSMD3
srip130405 chr8 137450317 137450317 - L1-Ta germline . yes 651 .
srip130508 chr9 1337904 1337904 - L1-Ta germline . no 651 .
srip131624 chr9 10137698 10137698 + L1-Ta germline . yes 651 PTPRD
srip131897 chr9 28111894 28111894 - L1-Ta germline . yes 651 LINGO2
srip134108 chr9 80014129 80014129 + L1-Ta germline . no 651 VPS13A
srip134288 chr9 86065262 86065262 - L1-Ta germline . no 651 FRMD3
srip134575 chr9 98465870 98465870 + L1-Ta germline . yes 651 .
srip134737 chr9 102615582 102615582 - L1-Ta germline . no 651 NR4A3
srip134795 chr9 103749297 103749297 + L1-Ta germline . no 651 .
srip135633 chr9 113185472 113185472 + L1-Ta germline . no 651 SVEP1
srip136891 chrX 34837319 34837319 - L1-Ta germline . no 651 .
srip136957 chrX 45449426 45449426 + L1-Ta germline . no 651 .
srip137012 chrX 49731196 49731196 - L1-Ta germline . no 651 CLCN5
srip137986 chrX 63233094 63233094 - L1-Ta germline . no 651 .
srip138364 chrX 67263241 67263241 + L1-Ta germline . no 651 OPHN1
srip138737 chrX 75543182 75543182 - L1-Ta germline . no 651 .
srip139333 chrX 85609830 85609830 + L1-Ta germline . yes 651 DACH2
srip139515 chrX 94857127 94857127 + L1-Ta germline . yes 651 .
srip140327 chrX 111557678 111557678 - L1-Ta germline . no 651 ZCCHC16
srip140612 chrX 118569413 118569413 - L1-Ta germline . no 651 SLC25A43
srip141433 chrX 130140534 130140534 + L1-Ta germline . no 651 .
srip141611 chrX 137146500 137146500 + L1-Ta germline . no 651 .
srip142120 chrX 154745667 154745667 - L1-Ta germline . no 651 TMLHE
srip142466 chrY 22634820 22634820 - L1-Ta germline . no 651 TTTY10