euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

238 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip534 chr1 42483962 42483962 + L1-Ta germline . no 650 HIVEP3
srip905 chr1 56834937 56834937 + L1-Ta germline . yes 650 .
srip1629 chr1 74984526 74984526 - L1-Ta germline . no 650 FPGT-TNNI3K;TNNI3K
srip1948 chr1 78362014 78362014 - L1-Ta germline validated no 650 NEXN
srip2134 chr1 86398798 86398798 + L1-Ta germline . no 650 COL24A1
srip2221 chr1 87144762 87144762 - L1-Ta germline . no 650 .
srip2579 chr1 99678977 99678977 - L1-Ta germline . no 650 .
srip2633 chr1 99854086 99854086 - L1-Ta germline . no 650 .
srip3229 chr1 105386449 105386449 - L1-Ta germline . no 650 .
srip3737 chr1 119238704 119238704 - L1-Ta germline . no 650 .
srip3957 chr1 121478354 121478354 + L1-Ta germline . yes 650 .
srip4083 chr1 149308424 149308424 + L1-Ta germline . no 650 LOC645262
srip4190 chr1 152462236 152462236 - L1-Ta germline . no 650 .
srip4273 chr1 158238664 158238664 + L1-Ta germline . yes 650 .
srip4555 chr1 163231881 163231881 - L1-Ta germline . no 650 LOC100505773
srip4791 chr1 165940104 165940104 - L1-Ta germline . yes 650 .
srip5512 chr1 180668321 180668321 - L1-Ta germline . no 650 XPR1
srip5785 chr1 190972962 190972962 - L1-Ta germline . no 650 .
srip6119 chr1 193836827 193836827 + L1-Ta germline . yes 650 .
srip6436 chr1 217548953 217548953 - L1-Ta germline . no 650 .
srip7595 chr10 5293335 5293335 + L1-Ta germline . yes 650 .
srip8698 chr10 32929792 32929792 - L1-Ta germline . no 650 C10orf68
srip11272 chr10 110846814 110846814 + L1-Ta germline . yes 650 .
srip12603 chr11 15995864 15995864 - L1-Ta germline . no 650 SOX6
srip12695 chr11 24355519 24355519 + L1-Ta germline . yes 650 .
srip15517 chr11 59815986 59815986 - L1-Ta germline . no 650 .
srip17257 chr11 95175423 95175423 + L1-Ta germline . no 650 .
srip17379 chr11 99478828 99478828 + L1-Ta germline . yes 650 CNTN5
srip20283 chr12 14335361 14335361 + L1-Ta germline . yes 650 .
srip22446 chr12 44501995 44501995 - L1-Ta germline . yes 650 TMEM117
srip22998 chr12 61396241 61396241 - L1-Ta germline . no 650 .
srip24043 chr12 79570815 79570815 - L1-Ta germline . no 650 SYT1
srip25278 chr12 98672913 98672913 + L1-Ta germline . yes 650 .
srip27519 chr13 30215833 30215833 - L1-Ta germline . no 650 .
srip27583 chr13 33441812 33441812 - L1-Ta germline . no 650 .
srip28358 chr13 57793451 57793451 - L1-Ta germline . no 650 .
srip28464 chr13 59088395 59088395 + L1-Ta germline . no 650 .
srip28687 chr13 61462318 61462318 - L1-Ta germline . no 650 .
srip30321 chr13 72968674 72968674 + L1-Ta germline . no 650 .
srip32047 chr13 86502081 86502081 + L1-Ta germline . no 650 .
srip32211 chr13 88851194 88851194 - L1-Ta germline . no 650 .
srip32443 chr13 92855881 92855881 + L1-Ta germline . yes 650 GPC5
srip33685 chr13 104704163 104704163 + L1-Ta germline . yes 650 .
srip34327 chr14 20554442 20554442 - L1-Ta germline . no 650 .
srip34392 chr14 24582584 24582584 + L1-Ta germline . yes 650 .
srip36396 chr14 41197899 41197899 - L1-Ta germline . no 650 .
srip37015 chr14 48662336 48662336 + L1-Ta germline . no 650 .
srip37995 chr14 71020049 71020049 + L1-Ta germline . no 650 .
srip39095 chr15 24383900 24383900 + L1-Ta germline . yes 650 .
srip39355 chr15 33678880 33678880 + L1-Ta germline . no 650 RYR3
srip40770 chr15 51875289 51875289 - L1-Ta germline . no 650 DMXL2
srip40829 chr15 53448042 53448042 - L1-Ta germline . no 650 .
srip41296 chr15 58012013 58012013 - L1-Ta germline . no 650 .
srip42668 chr15 91970537 91970537 + L1-Ta germline validated no 650 .
srip43838 chr16 7925421 7925421 + L1-Ta germline . no 650 .
srip44157 chr16 18832538 18832538 - L1-Ta germline . no 650 SMG1
srip45823 chr16 61079187 61079187 + L1-Ta germline . no 650 .
srip45928 chr16 65729907 65729907 + L1-Ta germline . yes 650 .
srip46429 chr16 79730897 79730897 + L1-Ta germline . no 650 .
srip46497 chr17 3132765 3132765 + L1-Ta germline . no 650 .
srip46572 chr17 9525306 9525306 + L1-Ta germline . yes 650 WDR16
srip47231 chr17 28398312 28398312 + L1-Ta germline . no 650 EFCAB5
srip47477 chr17 32192799 32192799 + L1-Ta germline . yes 650 ACCN1
srip47602 chr17 32813608 32813608 + L1-Ta germline . no 650 .
srip48698 chr18 5332408 5332408 - L1-Ta germline . no 650 .
srip49508 chr18 30185593 30185593 - L1-Ta germline . no 650 .
srip49726 chr18 34567457 34567457 + L1-Ta germline . yes 650 KIAA1328
srip50860 chr18 58172211 58172211 - L1-Ta germline . no 650 .
srip51117 chr18 61030433 61030433 - L1-Ta germline . no 650 KDSR
srip51204 chr18 63446487 63446487 - L1-Ta germline . no 650 CDH7
srip51274 chr18 68413712 68413712 - L1-Ta germline . no 650 .
srip51344 chr18 69024727 69024727 + L1-Ta germline . yes 650 .
srip52491 chr19 55091547 55091547 - L1-Ta germline . no 650 LILRA2
srip52840 chr2 11930045 11930045 - L1-Ta germline . no 650 LPIN1
srip53595 chr2 23191016 23191016 - L1-Ta germline . no 650 .
srip54367 chr2 41777137 41777137 - L1-Ta germline . no 650 .
srip54562 chr2 42051402 42051402 + L1-Ta germline . no 650 .
srip55621 chr2 73354355 73354355 - L1-Ta germline . no 650 .
srip55943 chr2 81834768 81834768 - L1-Ta germline . no 650 .
srip56290 chr2 83068216 83068216 + L1-Ta germline . yes 650 .
srip56566 chr2 88206937 88206937 + L1-Ta germline . yes 650 .
srip56980 chr2 108631988 108631988 - L1-Ta germline . no 650 .
srip57322 chr2 116246475 116246475 + L1-Ta germline . no 650 DPP10
srip57385 chr2 118667183 118667183 - L1-Ta germline . no 650 .
srip57601 chr2 126510571 126510571 + L1-Ta germline . yes 650 .
srip58343 chr2 142788891 142788891 - L1-Ta germline . no 650 LRP1B
srip58632 chr2 144624534 144624534 + L1-Ta germline . yes 650 .
srip59449 chr2 153864262 153864262 - L1-Ta germline . no 650 .
srip59924 chr2 176346680 176346680 - L1-Ta germline . no 650 .
srip61739 chr2 214647628 214647628 - L1-Ta germline . no 650 SPAG16
srip61806 chr2 218176494 218176494 + L1-Ta germline . yes 650 DIRC3
srip61982 chr2 221503730 221503730 - L1-Ta germline . no 650 .
srip62694 chr2 239902375 239902375 - L1-Ta germline . no 650 .
srip63008 chr20 7096788 7096788 - L1-Ta germline . no 650 .
srip63280 chr20 12781652 12781652 - L1-Ta germline . no 650 .
srip63963 chr20 23412776 23412776 + L1-Ta germline . yes 650 .
srip64740 chr20 41952103 41952103 - L1-Ta germline . no 650 .
srip65147 chr20 51779972 51779972 - L1-Ta germline . yes 650 TSHZ2
srip66511 chr21 24125137 24125137 + L1-Ta germline . yes 650 .
srip67469 chr22 22486374 22486374 - L1-Ta germline . no 650 IGL@
srip68777 chr22 44324601 44324601 - L1-Ta germline . no 650 PNPLA3
srip69668 chr3 656444 656444 - L1-Ta germline validated no 650 .
srip69738 chr3 2050178 2050178 + L1-Ta germline . yes 650 .
srip69860 chr3 4080917 4080917 - L1-Ta germline . yes 650 .
srip70892 chr3 26439488 26439488 - L1-Ta germline . no 650 .
srip71191 chr3 27135216 27135216 + L1-Ta germline . no 650 .
srip71353 chr3 33554072 33554072 + L1-Ta germline . no 650 CLASP2
srip72103 chr3 46824583 46824583 - L1-Ta germline . no 650 .
srip73341 chr3 59852889 59852889 + L1-Ta germline . no 650 FHIT
srip74415 chr3 80590157 80590157 - L1-Ta germline . no 650 .
srip74592 chr3 81770349 81770349 + L1-Ta germline . yes 650 GBE1
srip75570 chr3 85576552 85576552 + L1-Ta germline . no 650 CADM2
srip76204 chr3 101279646 101279646 + L1-Ta germline . no 650 .
srip76380 chr3 103275235 103275235 - L1-Ta germline . no 650 .
srip76472 chr3 105473860 105473860 - L1-Ta germline . no 650 CBLB
srip76567 chr3 108924737 108924737 + L1-Ta germline . yes 650 .
srip76646 chr3 109836400 109836400 - L1-Ta germline . no 650 .
srip76767 chr3 116084880 116084880 + L1-Ta germline . no 650 LSAMP-AS1;LSAMP
srip77360 chr3 129972765 129972765 + L1-Ta germline . yes 650 COL6A4P2
srip77424 chr3 130352893 130352893 + L1-Ta germline . yes 650 COL6A6
srip77562 chr3 132664831 132664831 - L1-Ta germline . no 650 .
srip77810 chr3 137073450 137073450 + L1-Ta germline . no 650 .
srip78916 chr3 154632590 154632590 + L1-Ta germline . yes 650 .
srip79212 chr3 158813156 158813156 - L1-Ta germline . yes 650 IQCJ;IQCJ-SCHIP1
srip79860 chr3 169269954 169269954 + L1-Ta germline . no 650 MECOM
srip80308 chr3 176091321 176091321 + L1-Ta germline . no 650 .
srip80909 chr3 182952475 182952475 - L1-Ta germline . no 650 MCF2L2
srip81589 chr3 187835306 187835306 - L1-Ta germline . no 650 .
srip82330 chr4 7995690 7995690 - L1-Ta germline . no 650 ABLIM2
srip82626 chr4 15849204 15849204 + L1-Ta germline . no 650 CD38
srip82694 chr4 16950725 16950725 + L1-Ta germline . yes 650 .
srip83285 chr4 19170950 19170950 + L1-Ta germline . no 650 .
srip83593 chr4 26929329 26929329 + L1-Ta germline . no 650 STIM2
srip84523 chr4 46058194 46058194 + L1-Ta germline . no 650 GABRG1
srip84552 chr4 46799112 46799112 + L1-Ta germline . yes 650 COX7B2
srip84600 chr4 46883027 46883027 + L1-Ta germline . no 650 .
srip84992 chr4 48738022 48738022 + L1-Ta germline . no 650 FRYL
srip85580 chr4 58428313 58428313 - L1-Ta germline . no 650 .
srip85617 chr4 58888335 58888335 + L1-Ta germline . no 650 .
srip85854 chr4 59442445 59442445 - L1-Ta germline . no 650 .
srip87025 chr4 71093305 71093305 + L1-Ta germline . no 650 C4orf7
srip87158 chr4 79032904 79032904 + L1-Ta germline . yes 650 FRAS1
srip87465 chr4 80894074 80894074 + L1-Ta germline . yes 650 ANTXR2
srip87907 chr4 86607955 86607955 + L1-Ta germline . no 650 ARHGAP24
srip88337 chr4 99513572 99513572 - L1-Ta germline . no 650 TSPAN5
srip89271 chr4 107492188 107492188 - L1-Ta germline . no 650 .
srip91225 chr4 128965434 128965434 - L1-Ta germline . no 650 .
srip92235 chr4 134596424 134596424 + L1-Ta germline . no 650 .
srip92299 chr4 136006539 136006539 + L1-Ta germline . no 650 .
srip93159 chr4 147543284 147543284 + L1-Ta germline . no 650 .
srip94134 chr4 167369021 167369021 - L1-Ta germline . no 650 .
srip94451 chr4 170281916 170281916 - L1-Ta germline . no 650 .
srip94507 chr4 170436610 170436610 - L1-Ta germline . no 650 NEK1
srip95098 chr4 182695155 182695155 - L1-Ta germline . no 650 .
srip96394 chr5 12197468 12197468 - L1-Ta germline . yes 650 .
srip96848 chr5 20644380 20644380 - L1-Ta germline . no 650 .
srip97777 chr5 33633345 33633345 - L1-Ta germline . no 650 ADAMTS12
srip101432 chr5 99981611 99981611 + L1-Ta germline . yes 650 .
srip102225 chr5 109480258 109480258 - L1-Ta germline validated no 650 .
srip102571 chr5 110474800 110474800 + L1-Ta germline . yes 650 .
srip102621 chr5 110643939 110643939 + L1-Ta germline . yes 650 CAMK4
srip102809 chr5 118941211 118941211 + L1-Ta germline . no 650 .
srip103006 chr5 124907258 124907258 + L1-Ta germline . yes 650 .
srip103290 chr5 125040040 125040040 + L1-Ta germline . no 650 .
srip103443 chr5 132924977 132924977 + L1-Ta germline . yes 650 FSTL4
srip103580 chr5 132934353 132934353 + L1-Ta germline . no 650 FSTL4
srip103894 chr5 137130159 137130159 - L1-Ta germline . no 650 .
srip103921 chr5 138420464 138420464 + L1-Ta germline . yes 650 SIL1
srip104251 chr5 144473640 144473640 + L1-Ta germline . no 650 .
srip104918 chr5 155488954 155488954 - L1-Ta germline . yes 650 .
srip105535 chr5 159351193 159351193 - L1-Ta germline . no 650 ADRA1B
srip105868 chr5 165848548 165848548 + L1-Ta germline . yes 650 .
srip106045 chr5 172829796 172829796 - L1-Ta germline . no 650 .
srip106616 chr6 2418002 2418002 - L1-Ta germline . no 650 .
srip107677 chr6 18910854 18910854 - L1-Ta germline . no 650 .
srip108198 chr6 39645329 39645329 - L1-Ta germline . yes 650 KIF6
srip108683 chr6 46310294 46310294 + L1-Ta germline . no 650 .
srip108779 chr6 50611605 50611605 - L1-Ta germline . no 650 .
srip108863 chr6 55594843 55594843 - L1-Ta germline . no 650 .
srip109840 chr6 66787597 66787597 - L1-Ta germline . no 650 .
srip109887 chr6 67313668 67313668 + L1-Ta germline . yes 650 .
srip109907 chr6 67386643 67386643 - L1-Ta germline . no 650 .
srip110362 chr6 73995229 73995229 - L1-Ta germline . no 650 C6orf147
srip110889 chr6 77980636 77980636 - L1-Ta germline . no 650 .
srip112008 chr6 91669505 91669505 - L1-Ta germline . no 650 .
srip112917 chr6 113030984 113030984 + L1-Ta germline . no 650 LOC100287612
srip113093 chr6 115899917 115899917 - L1-Ta germline . no 650 .
srip113427 chr6 125692048 125692048 + L1-Ta germline validated no 650 .
srip113572 chr6 136712687 136712687 + L1-Ta germline . yes 650 MAP7
srip114338 chr6 148163569 148163569 + L1-Ta germline . no 650 .
srip114617 chr6 148195788 148195788 + L1-Ta germline . no 650 .
srip114831 chr6 153029982 153029982 - L1-Ta germline . no 650 MYCT1
srip116717 chr7 30484894 30484894 + L1-Ta germline . no 650 NOD1
srip117103 chr7 45733735 45733735 + L1-Ta germline . no 650 ADCY1
srip118561 chr7 69668336 69668336 + L1-Ta germline . yes 650 AUTS2
srip118619 chr7 69828469 69828469 + L1-Ta germline . no 650 AUTS2
srip120436 chr7 89704574 89704574 + L1-Ta germline . no 650 .
srip122068 chr7 109548699 109548699 + L1-Ta germline . no 650 .
srip122322 chr7 111609264 111609264 + L1-Ta germline . yes 650 DOCK4
srip122361 chr7 112789581 112789581 - L1-Ta germline . no 650 .
srip122485 chr7 113139394 113139394 + L1-Ta germline . yes 650 .
srip122521 chr7 113416171 113416171 - L1-Ta germline . no 650 .
srip122956 chr7 127930833 127930833 - L1-Ta germline . no 650 .
srip123003 chr7 129507566 129507566 + L1-Ta germline . no 650 UBE2H
srip123062 chr7 130386823 130386823 - L1-Ta germline . no 650 .
srip123195 chr7 141620449 141620449 - L1-Ta germline . no 650 .
srip123451 chr7 145063368 145063368 + L1-Ta germline . yes 650 .
srip123672 chr7 147539649 147539649 - L1-Ta germline . no 650 CNTNAP2
srip124341 chr8 5829277 5829277 - L1-Ta germline . no 650 .
srip124780 chr8 9597567 9597567 + L1-Ta germline . yes 650 TNKS
srip125001 chr8 18768149 18768149 + L1-Ta germline . yes 650 PSD3
srip128146 chr8 85428607 85428607 + L1-Ta germline . no 650 RALYL
srip128504 chr8 97911008 97911008 + L1-Ta germline . yes 650 PGCP
srip128658 chr8 100233000 100233000 - L1-Ta germline . no 650 VPS13B
srip128917 chr8 114072203 114072203 - L1-Ta germline . no 650 CSMD3
srip130116 chr8 131041221 131041221 + L1-Ta germline . no 650 .
srip130404 chr8 137450317 137450317 - L1-Ta germline . yes 650 .
srip130507 chr9 1337904 1337904 - L1-Ta germline . no 650 .
srip131623 chr9 10137698 10137698 + L1-Ta germline . yes 650 PTPRD
srip131896 chr9 28111894 28111894 - L1-Ta germline . yes 650 LINGO2
srip133201 chr9 32463884 32463884 - L1-Ta germline . no 650 DDX58
srip134107 chr9 80014129 80014129 + L1-Ta germline . no 650 VPS13A
srip134287 chr9 86065262 86065262 - L1-Ta germline . no 650 FRMD3
srip134374 chr9 92917935 92917935 + L1-Ta germline . yes 650 .
srip134574 chr9 98465870 98465870 + L1-Ta germline . yes 650 .
srip134736 chr9 102615582 102615582 - L1-Ta germline . no 650 NR4A3
srip134794 chr9 103749297 103749297 + L1-Ta germline . no 650 .
srip136956 chrX 45449426 45449426 + L1-Ta germline . no 650 .
srip137011 chrX 49731196 49731196 - L1-Ta germline . no 650 CLCN5
srip137048 chrX 49784005 49784005 - L1-Ta germline . no 650 CLCN5
srip138477 chrX 72606851 72606851 + L1-Ta germline . no 650 .
srip139027 chrX 75949601 75949601 + L1-Ta germline . no 650 .
srip139108 chrX 77696853 77696853 - L1-Ta germline . no 650 .
srip139514 chrX 94857127 94857127 + L1-Ta germline . yes 650 .
srip140556 chrX 117098155 117098155 + L1-Ta germline . yes 650 KLHL13
srip140611 chrX 118569413 118569413 - L1-Ta germline . no 650 SLC25A43
srip141432 chrX 130140534 130140534 + L1-Ta germline . no 650 .
srip141610 chrX 137146500 137146500 + L1-Ta germline . no 650 .