euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

234 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip181 chr1 31041664 31041664 + L1-Ta germline . no 649 .
srip533 chr1 42483962 42483962 + L1-Ta germline . no 649 HIVEP3
srip1628 chr1 74984526 74984526 - L1-Ta germline . no 649 FPGT-TNNI3K;TNNI3K
srip2133 chr1 86398798 86398798 + L1-Ta germline . no 649 COL24A1
srip2220 chr1 87144762 87144762 - L1-Ta germline . no 649 .
srip2578 chr1 99678977 99678977 - L1-Ta germline . no 649 .
srip2632 chr1 99854086 99854086 - L1-Ta germline . no 649 .
srip3103 chr1 102697069 102697069 + L1-Ta germline . no 649 .
srip3228 chr1 105386449 105386449 - L1-Ta germline . no 649 .
srip3956 chr1 121478354 121478354 + L1-Ta germline . yes 649 .
srip4151 chr1 150625666 150625666 + L1-Ta germline . no 649 GOLPH3L
srip4272 chr1 158238664 158238664 + L1-Ta germline . yes 649 .
srip4554 chr1 163231881 163231881 - L1-Ta germline . no 649 LOC100505773
srip4790 chr1 165940104 165940104 - L1-Ta germline . yes 649 .
srip4827 chr1 166212290 166212290 - L1-Ta germline . yes 649 .
srip5784 chr1 190972962 190972962 - L1-Ta germline . no 649 .
srip6118 chr1 193836827 193836827 + L1-Ta germline . yes 649 .
srip6966 chr1 223491176 223491176 - L1-Ta germline . yes 649 SUSD4
srip7594 chr10 5293335 5293335 + L1-Ta germline . yes 649 .
srip7642 chr10 6411577 6411577 - L1-Ta germline . no 649 .
srip8697 chr10 32929792 32929792 - L1-Ta germline . no 649 C10orf68
srip8821 chr10 42527965 42527965 + L1-Ta germline . no 649 .
srip10050 chr10 87121396 87121396 + L1-Ta germline . no 649 .
srip11271 chr10 110846814 110846814 + L1-Ta germline . yes 649 .
srip12694 chr11 24355519 24355519 + L1-Ta germline . yes 649 .
srip13068 chr11 26418548 26418548 + L1-Ta germline . no 649 ANO3
srip14866 chr11 49125628 49125628 - L1-Ta germline . no 649 .
srip15516 chr11 59815986 59815986 - L1-Ta germline . no 649 .
srip17378 chr11 99478828 99478828 + L1-Ta germline . yes 649 CNTN5
srip20282 chr12 14335361 14335361 + L1-Ta germline . yes 649 .
srip21920 chr12 42238062 42238062 - L1-Ta germline . no 649 .
srip22445 chr12 44501995 44501995 - L1-Ta germline . yes 649 TMEM117
srip24042 chr12 79570815 79570815 - L1-Ta germline . no 649 SYT1
srip25187 chr12 97365543 97365543 - L1-Ta germline . no 649 .
srip25277 chr12 98672913 98672913 + L1-Ta germline . yes 649 .
srip27518 chr13 30215833 30215833 - L1-Ta germline . no 649 .
srip27582 chr13 33441812 33441812 - L1-Ta germline . no 649 .
srip28357 chr13 57793451 57793451 - L1-Ta germline . no 649 .
srip28463 chr13 59088395 59088395 + L1-Ta germline . no 649 .
srip30519 chr13 77186902 77186902 - L1-Ta germline . no 649 .
srip32046 chr13 86502081 86502081 + L1-Ta germline . no 649 .
srip32210 chr13 88851194 88851194 - L1-Ta germline . no 649 .
srip32442 chr13 92855881 92855881 + L1-Ta germline . yes 649 GPC5
srip33684 chr13 104704163 104704163 + L1-Ta germline . yes 649 .
srip34326 chr14 20554442 20554442 - L1-Ta germline . no 649 .
srip34391 chr14 24582584 24582584 + L1-Ta germline . yes 649 .
srip35278 chr14 29970599 29970599 - L1-Ta germline . no 649 .
srip36395 chr14 41197899 41197899 - L1-Ta germline . no 649 .
srip37994 chr14 71020049 71020049 + L1-Ta germline . no 649 .
srip38881 chr14 95605326 95605326 + L1-Ta germline . no 649 DICER1
srip38967 chr15 20022208 20022208 - L1-Ta germline . no 649 .
srip39008 chr15 20116657 20116657 + L1-Ta germline . no 649 .
srip39094 chr15 24383900 24383900 + L1-Ta germline . yes 649 .
srip40769 chr15 51875289 51875289 - L1-Ta germline . no 649 DMXL2
srip40828 chr15 53448042 53448042 - L1-Ta germline . no 649 .
srip41793 chr15 71027483 71027483 + L1-Ta germline . yes 649 UACA
srip43837 chr16 7925421 7925421 + L1-Ta germline . no 649 .
srip45822 chr16 61079187 61079187 + L1-Ta germline . no 649 .
srip47230 chr17 28398312 28398312 + L1-Ta germline . no 649 EFCAB5
srip47476 chr17 32192799 32192799 + L1-Ta germline . yes 649 ACCN1
srip47601 chr17 32813608 32813608 + L1-Ta germline . no 649 .
srip48697 chr18 5332408 5332408 - L1-Ta germline . no 649 .
srip48988 chr18 15286597 15286597 + L1-Ta germline . no 649 .
srip49045 chr18 23067399 23067399 + L1-Ta germline . no 649 .
srip49507 chr18 30185593 30185593 - L1-Ta germline . no 649 .
srip49725 chr18 34567457 34567457 + L1-Ta germline . yes 649 KIAA1328
srip50859 chr18 58172211 58172211 - L1-Ta germline . no 649 .
srip51116 chr18 61030433 61030433 - L1-Ta germline . no 649 KDSR
srip51203 chr18 63446487 63446487 - L1-Ta germline . no 649 CDH7
srip51273 chr18 68413712 68413712 - L1-Ta germline . no 649 .
srip51343 chr18 69024727 69024727 + L1-Ta germline . yes 649 .
srip52380 chr19 38344787 38344787 + L1-Ta germline . no 649 LOC100631378
srip52490 chr19 55091547 55091547 - L1-Ta germline . no 649 LILRA2
srip52839 chr2 11930045 11930045 - L1-Ta germline . no 649 LPIN1
srip53594 chr2 23191016 23191016 - L1-Ta germline . no 649 .
srip54241 chr2 36570251 36570251 - L1-Ta germline . no 649 .
srip54366 chr2 41777137 41777137 - L1-Ta germline . no 649 .
srip54561 chr2 42051402 42051402 + L1-Ta germline . no 649 .
srip54936 chr2 53460056 53460056 + L1-Ta germline . no 649 .
srip55620 chr2 73354355 73354355 - L1-Ta germline . no 649 .
srip56289 chr2 83068216 83068216 + L1-Ta germline . yes 649 .
srip56565 chr2 88206937 88206937 + L1-Ta germline . yes 649 .
srip56979 chr2 108631988 108631988 - L1-Ta germline . no 649 .
srip57321 chr2 116246475 116246475 + L1-Ta germline . no 649 DPP10
srip57384 chr2 118667183 118667183 - L1-Ta germline . no 649 .
srip57488 chr2 124392252 124392252 + L1-Ta germline . no 649 .
srip57959 chr2 139785112 139785112 - L1-Ta germline . no 649 .
srip58342 chr2 142788891 142788891 - L1-Ta germline . no 649 LRP1B
srip58631 chr2 144624534 144624534 + L1-Ta germline . yes 649 .
srip59448 chr2 153864262 153864262 - L1-Ta germline . no 649 .
srip59821 chr2 170111155 170111155 + L1-Ta germline . yes 649 LRP2
srip59923 chr2 176346680 176346680 - L1-Ta germline . no 649 .
srip61307 chr2 205631655 205631655 - L1-Ta germline . no 649 PARD3B
srip61738 chr2 214647628 214647628 - L1-Ta germline . no 649 SPAG16
srip61981 chr2 221503730 221503730 - L1-Ta germline . no 649 .
srip62693 chr2 239902375 239902375 - L1-Ta germline . no 649 .
srip63007 chr20 7096788 7096788 - L1-Ta germline . no 649 .
srip63279 chr20 12781652 12781652 - L1-Ta germline . no 649 .
srip63672 chr20 19400466 19400466 - L1-Ta germline . no 649 SLC24A3
srip65146 chr20 51779972 51779972 - L1-Ta germline . yes 649 TSHZ2
srip66510 chr21 24125137 24125137 + L1-Ta germline . yes 649 .
srip67468 chr22 22486374 22486374 - L1-Ta germline . no 649 IGL@
srip67895 chr22 28455877 28455877 - L1-Ta germline . no 649 TTC28
srip68222 chr22 29065287 29065287 + L1-Ta germline . yes 649 TTC28
srip68776 chr22 44324601 44324601 - L1-Ta germline . no 649 PNPLA3
srip69667 chr3 656444 656444 - L1-Ta germline validated no 649 .
srip69737 chr3 2050178 2050178 + L1-Ta germline . yes 649 .
srip70891 chr3 26439488 26439488 - L1-Ta germline . no 649 .
srip71190 chr3 27135216 27135216 + L1-Ta germline . no 649 .
srip71352 chr3 33554072 33554072 + L1-Ta germline . no 649 CLASP2
srip72102 chr3 46824583 46824583 - L1-Ta germline . no 649 .
srip73340 chr3 59852889 59852889 + L1-Ta germline . no 649 FHIT
srip74414 chr3 80590157 80590157 - L1-Ta germline . no 649 .
srip75947 chr3 90389460 90389460 + L1-Ta germline . no 649 .
srip76379 chr3 103275235 103275235 - L1-Ta germline . no 649 .
srip76471 chr3 105473860 105473860 - L1-Ta germline . no 649 CBLB
srip76566 chr3 108924737 108924737 + L1-Ta germline . yes 649 .
srip76645 chr3 109836400 109836400 - L1-Ta germline . no 649 .
srip76766 chr3 116084880 116084880 + L1-Ta germline . no 649 LSAMP-AS1;LSAMP
srip76837 chr3 119581390 119581390 + L1-Ta germline . no 649 GSK3B
srip77359 chr3 129972765 129972765 + L1-Ta germline . yes 649 COL6A4P2
srip77423 chr3 130352893 130352893 + L1-Ta germline . yes 649 COL6A6
srip77537 chr3 132525461 132525461 - L1-Ta germline . no 649 NPHP3-AS1
srip77561 chr3 132664831 132664831 - L1-Ta germline . no 649 .
srip77809 chr3 137073450 137073450 + L1-Ta germline . no 649 .
srip77902 chr3 139044620 139044620 + L1-Ta germline validated no 649 .
srip78915 chr3 154632590 154632590 + L1-Ta germline . yes 649 .
srip79211 chr3 158813156 158813156 - L1-Ta germline . yes 649 IQCJ;IQCJ-SCHIP1
srip79859 chr3 169269954 169269954 + L1-Ta germline . no 649 MECOM
srip80307 chr3 176091321 176091321 + L1-Ta germline . no 649 .
srip80908 chr3 182952475 182952475 - L1-Ta germline . no 649 MCF2L2
srip81588 chr3 187835306 187835306 - L1-Ta germline . no 649 .
srip82625 chr4 15849204 15849204 + L1-Ta germline . no 649 CD38
srip83284 chr4 19170950 19170950 + L1-Ta germline . no 649 .
srip84551 chr4 46799112 46799112 + L1-Ta germline . yes 649 COX7B2
srip84599 chr4 46883027 46883027 + L1-Ta germline . no 649 .
srip84937 chr4 48416463 48416463 - L1-Ta germline . no 649 SLAIN2
srip84991 chr4 48738022 48738022 + L1-Ta germline . no 649 FRYL
srip85579 chr4 58428313 58428313 - L1-Ta germline . no 649 .
srip85616 chr4 58888335 58888335 + L1-Ta germline . no 649 .
srip85853 chr4 59442445 59442445 - L1-Ta germline . no 649 .
srip87024 chr4 71093305 71093305 + L1-Ta germline . no 649 C4orf7
srip87157 chr4 79032904 79032904 + L1-Ta germline . yes 649 FRAS1
srip87464 chr4 80894074 80894074 + L1-Ta germline . yes 649 ANTXR2
srip87728 chr4 82931377 82931377 + L1-Ta germline . yes 649 .
srip87843 chr4 86299446 86299446 + L1-Ta germline . no 649 .
srip87906 chr4 86607955 86607955 + L1-Ta germline . no 649 ARHGAP24
srip88059 chr4 88486275 88486275 + L1-Ta germline . yes 649 .
srip88336 chr4 99513572 99513572 - L1-Ta germline . no 649 TSPAN5
srip89270 chr4 107492188 107492188 - L1-Ta germline . no 649 .
srip89485 chr4 108277892 108277892 + L1-Ta germline . no 649 .
srip92298 chr4 136006539 136006539 + L1-Ta germline . no 649 .
srip93158 chr4 147543284 147543284 + L1-Ta germline . no 649 .
srip94450 chr4 170281916 170281916 - L1-Ta germline . no 649 .
srip94506 chr4 170436610 170436610 - L1-Ta germline . no 649 NEK1
srip95097 chr4 182695155 182695155 - L1-Ta germline . no 649 .
srip96393 chr5 12197468 12197468 - L1-Ta germline . yes 649 .
srip96847 chr5 20644380 20644380 - L1-Ta germline . no 649 .
srip97776 chr5 33633345 33633345 - L1-Ta germline . no 649 ADAMTS12
srip98217 chr5 40041320 40041320 - L1-Ta germline . no 649 .
srip98824 chr5 51488295 51488295 - L1-Ta germline . no 649 .
srip101431 chr5 99981611 99981611 + L1-Ta germline . yes 649 .
srip102224 chr5 109480258 109480258 - L1-Ta germline validated no 649 .
srip102549 chr5 110320667 110320667 + L1-Ta germline . no 649 .
srip102570 chr5 110474800 110474800 + L1-Ta germline . yes 649 .
srip102620 chr5 110643939 110643939 + L1-Ta germline . yes 649 CAMK4
srip102864 chr5 121006042 121006042 - L1-Ta germline . no 649 .
srip103005 chr5 124907258 124907258 + L1-Ta germline . yes 649 .
srip103442 chr5 132924977 132924977 + L1-Ta germline . yes 649 FSTL4
srip103893 chr5 137130159 137130159 - L1-Ta germline . no 649 .
srip103920 chr5 138420464 138420464 + L1-Ta germline . yes 649 SIL1
srip104348 chr5 147337963 147337963 - L1-Ta germline . no 649 .
srip104917 chr5 155488954 155488954 - L1-Ta germline . yes 649 .
srip105534 chr5 159351193 159351193 - L1-Ta germline . no 649 ADRA1B
srip106044 chr5 172829796 172829796 - L1-Ta germline . no 649 .
srip107676 chr6 18910854 18910854 - L1-Ta germline . no 649 .
srip108197 chr6 39645329 39645329 - L1-Ta germline . yes 649 KIF6
srip108778 chr6 50611605 50611605 - L1-Ta germline . no 649 .
srip108862 chr6 55594843 55594843 - L1-Ta germline . no 649 .
srip109839 chr6 66787597 66787597 - L1-Ta germline . no 649 .
srip110361 chr6 73995229 73995229 - L1-Ta germline . no 649 C6orf147
srip110888 chr6 77980636 77980636 - L1-Ta germline . no 649 .
srip112007 chr6 91669505 91669505 - L1-Ta germline . no 649 .
srip112916 chr6 113030984 113030984 + L1-Ta germline . no 649 LOC100287612
srip113092 chr6 115899917 115899917 - L1-Ta germline . no 649 .
srip113407 chr6 125643206 125643206 + L1-Ta germline . yes 649 .
srip113571 chr6 136712687 136712687 + L1-Ta germline . yes 649 MAP7
srip114616 chr6 148195788 148195788 + L1-Ta germline . no 649 .
srip115747 chr6 162404960 162404960 + L1-Ta germline . no 649 PARK2
srip116181 chr7 9292348 9292348 + L1-Ta germline . no 649 .
srip116529 chr7 25081462 25081462 - L1-Ta germline . no 649 .
srip116652 chr7 28783416 28783416 - L1-Ta germline . no 649 CREB5
srip116716 chr7 30484894 30484894 + L1-Ta germline . no 649 NOD1
srip117102 chr7 45733735 45733735 + L1-Ta germline . no 649 ADCY1
srip118935 chr7 75335791 75335791 - L1-Ta germline . no 649 HIP1
srip119655 chr7 84901721 84901721 - L1-Ta germline . no 649 .
srip120435 chr7 89704574 89704574 + L1-Ta germline . no 649 .
srip122067 chr7 109548699 109548699 + L1-Ta germline . no 649 .
srip122321 chr7 111609264 111609264 + L1-Ta germline . yes 649 DOCK4
srip122360 chr7 112789581 112789581 - L1-Ta germline . no 649 .
srip122484 chr7 113139394 113139394 + L1-Ta germline . yes 649 .
srip122955 chr7 127930833 127930833 - L1-Ta germline . no 649 .
srip123002 chr7 129507566 129507566 + L1-Ta germline . no 649 UBE2H
srip123061 chr7 130386823 130386823 - L1-Ta germline . no 649 .
srip123194 chr7 141620449 141620449 - L1-Ta germline . no 649 .
srip123450 chr7 145063368 145063368 + L1-Ta germline . yes 649 .
srip124340 chr8 5829277 5829277 - L1-Ta germline . no 649 .
srip124779 chr8 9597567 9597567 + L1-Ta germline . yes 649 TNKS
srip125000 chr8 18768149 18768149 + L1-Ta germline . yes 649 PSD3
srip125636 chr8 28977684 28977684 - L1-Ta germline . no 649 KIF13B
srip128503 chr8 97911008 97911008 + L1-Ta germline . yes 649 PGCP
srip128916 chr8 114072203 114072203 - L1-Ta germline . no 649 CSMD3
srip130115 chr8 131041221 131041221 + L1-Ta germline . no 649 .
srip130403 chr8 137450317 137450317 - L1-Ta germline . yes 649 .
srip131622 chr9 10137698 10137698 + L1-Ta germline . yes 649 PTPRD
srip131895 chr9 28111894 28111894 - L1-Ta germline . yes 649 LINGO2
srip133200 chr9 32463884 32463884 - L1-Ta germline . no 649 DDX58
srip134106 chr9 80014129 80014129 + L1-Ta germline . no 649 VPS13A
srip134286 chr9 86065262 86065262 - L1-Ta germline . no 649 FRMD3
srip134573 chr9 98465870 98465870 + L1-Ta germline . yes 649 .
srip134735 chr9 102615582 102615582 - L1-Ta germline . no 649 NR4A3
srip134793 chr9 103749297 103749297 + L1-Ta germline . no 649 .
srip137985 chrX 63233094 63233094 - L1-Ta germline . no 649 .
srip139026 chrX 75949601 75949601 + L1-Ta germline . no 649 .
srip139107 chrX 77696853 77696853 - L1-Ta germline . no 649 .
srip139155 chrX 81102668 81102668 + L1-Ta germline . yes 649 .
srip139358 chrX 85701285 85701285 - L1-Ta germline . no 649 DACH2
srip139513 chrX 94857127 94857127 + L1-Ta germline . yes 649 .
srip140156 chrX 105718545 105718545 + L1-Ta germline . yes 649 .
srip140837 chrX 120397638 120397638 - L1-Ta germline . no 649 .
srip141431 chrX 130140534 130140534 + L1-Ta germline . no 649 .
srip141609 chrX 137146500 137146500 + L1-Ta germline . no 649 .
srip142119 chrX 154745667 154745667 - L1-Ta germline . no 649 TMLHE
srip142465 chrY 22634820 22634820 - L1-Ta germline . no 649 TTTY10