euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

239 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip527 chr1 42483962 42483962 + L1-Ta germline . no 640 HIVEP3
srip1181 chr1 65909392 65909392 - L1-Ta germline . no 640 LEPR
srip1620 chr1 74984526 74984526 - L1-Ta germline . no 640 FPGT-TNNI3K;TNNI3K
srip2125 chr1 86398798 86398798 + L1-Ta germline . no 640 COL24A1
srip2182 chr1 86741680 86741680 + L1-Ta germline . yes 640 .
srip2211 chr1 87144762 87144762 - L1-Ta germline . no 640 .
srip2623 chr1 99854086 99854086 - L1-Ta germline . no 640 .
srip3101 chr1 102697069 102697069 + L1-Ta germline . no 640 .
srip3219 chr1 105386449 105386449 - L1-Ta germline . no 640 .
srip3948 chr1 121478354 121478354 + L1-Ta germline . yes 640 .
srip4010 chr1 142962099 142962099 + L1-Ta germline . no 640 .
srip4075 chr1 149308424 149308424 + L1-Ta germline . no 640 LOC645262
srip4186 chr1 152462236 152462236 - L1-Ta germline . no 640 .
srip4235 chr1 157732948 157732948 + L1-Ta germline . no 640 FCRL2
srip4263 chr1 158238664 158238664 + L1-Ta germline . yes 640 .
srip4547 chr1 163231881 163231881 - L1-Ta germline . no 640 LOC100505773
srip4822 chr1 166212290 166212290 - L1-Ta germline . yes 640 .
srip6109 chr1 193836827 193836827 + L1-Ta germline . yes 640 .
srip6472 chr1 218182567 218182567 - L1-Ta germline . no 640 .
srip6963 chr1 223491176 223491176 - L1-Ta germline . yes 640 SUSD4
srip7024 chr1 228058514 228058514 - L1-Ta germline . yes 640 .
srip7585 chr10 5293335 5293335 + L1-Ta germline . yes 640 .
srip8692 chr10 32929792 32929792 - L1-Ta germline . no 640 C10orf68
srip8950 chr10 58863547 58863547 - L1-Ta germline . no 640 .
srip10767 chr10 107137008 107137008 - L1-Ta germline . no 640 .
srip11262 chr10 110846814 110846814 + L1-Ta germline . yes 640 .
srip12595 chr11 15995864 15995864 - L1-Ta germline . no 640 SOX6
srip13646 chr11 33670122 33670122 + L1-Ta germline validated no 640 C11orf41
srip14836 chr11 48755930 48755930 + L1-Ta germline . no 640 .
srip16769 chr11 87051059 87051059 - L1-Ta germline . no 640 .
srip17369 chr11 99478828 99478828 + L1-Ta germline . yes 640 CNTN5
srip17747 chr11 104556130 104556130 - L1-Ta germline . no 640 .
srip20273 chr12 14335361 14335361 + L1-Ta germline . yes 640 .
srip21917 chr12 42238062 42238062 - L1-Ta germline . no 640 .
srip22437 chr12 44501995 44501995 - L1-Ta germline . yes 640 TMEM117
srip23392 chr12 70167057 70167057 - L1-Ta germline . no 640 RAB3IP
srip24037 chr12 79570815 79570815 - L1-Ta germline . no 640 SYT1
srip24956 chr12 86633816 86633816 + L1-Ta germline . yes 640 MGAT4C
srip25346 chr12 102842494 102842494 + L1-Ta germline . no 640 IGF1
srip27573 chr13 33441812 33441812 - L1-Ta germline . no 640 .
srip28348 chr13 57793451 57793451 - L1-Ta germline . no 640 .
srip28456 chr13 59088395 59088395 + L1-Ta germline . no 640 .
srip30518 chr13 77186902 77186902 - L1-Ta germline . no 640 .
srip32037 chr13 86502081 86502081 + L1-Ta germline . no 640 .
srip32201 chr13 88851194 88851194 - L1-Ta germline . no 640 .
srip32433 chr13 92855881 92855881 + L1-Ta germline . yes 640 GPC5
srip36388 chr14 41197899 41197899 - L1-Ta germline . no 640 .
srip37007 chr14 48662336 48662336 + L1-Ta germline . no 640 .
srip37985 chr14 71020049 71020049 + L1-Ta germline . no 640 .
srip38872 chr14 95605326 95605326 + L1-Ta germline . no 640 DICER1
srip39085 chr15 24383900 24383900 + L1-Ta germline . yes 640 .
srip40760 chr15 51875289 51875289 - L1-Ta germline . no 640 DMXL2
srip40819 chr15 53448042 53448042 - L1-Ta germline . no 640 .
srip42284 chr15 83551535 83551535 - L1-Ta germline . no 640 HOMER2
srip44152 chr16 18832538 18832538 - L1-Ta germline . no 640 SMG1
srip45813 chr16 61079187 61079187 + L1-Ta germline . no 640 .
srip45919 chr16 65729907 65729907 + L1-Ta germline . yes 640 .
srip47226 chr17 28398312 28398312 + L1-Ta germline . no 640 EFCAB5
srip47467 chr17 32192799 32192799 + L1-Ta germline . yes 640 ACCN1
srip48688 chr18 5332408 5332408 - L1-Ta germline . no 640 .
srip49498 chr18 30185593 30185593 - L1-Ta germline . no 640 .
srip49722 chr18 34567457 34567457 + L1-Ta germline . yes 640 KIAA1328
srip50851 chr18 58172211 58172211 - L1-Ta germline . no 640 .
srip51107 chr18 61030433 61030433 - L1-Ta germline . no 640 KDSR
srip51194 chr18 63446487 63446487 - L1-Ta germline . no 640 CDH7
srip51264 chr18 68413712 68413712 - L1-Ta germline . no 640 .
srip51334 chr18 69024727 69024727 + L1-Ta germline . yes 640 .
srip52481 chr19 55091547 55091547 - L1-Ta germline . no 640 LILRA2
srip53590 chr2 23191016 23191016 - L1-Ta germline . no 640 .
srip54360 chr2 41777137 41777137 - L1-Ta germline . no 640 .
srip55612 chr2 73354355 73354355 - L1-Ta germline . no 640 .
srip55934 chr2 81834768 81834768 - L1-Ta germline . no 640 .
srip56509 chr2 83188326 83188326 + L1-Ta germline . no 640 .
srip56970 chr2 108631988 108631988 - L1-Ta germline . no 640 .
srip57312 chr2 116246475 116246475 + L1-Ta germline . no 640 DPP10
srip57375 chr2 118667183 118667183 - L1-Ta germline . no 640 .
srip57592 chr2 126510571 126510571 + L1-Ta germline . yes 640 .
srip58333 chr2 142788891 142788891 - L1-Ta germline . no 640 LRP1B
srip58622 chr2 144624534 144624534 + L1-Ta germline . yes 640 .
srip59439 chr2 153864262 153864262 - L1-Ta germline . no 640 .
srip59914 chr2 176346680 176346680 - L1-Ta germline . no 640 .
srip61298 chr2 205631655 205631655 - L1-Ta germline . no 640 PARD3B
srip61729 chr2 214647628 214647628 - L1-Ta germline . no 640 SPAG16
srip61797 chr2 218176494 218176494 + L1-Ta germline . yes 640 DIRC3
srip62687 chr2 239902375 239902375 - L1-Ta germline . no 640 .
srip63270 chr20 12781652 12781652 - L1-Ta germline . no 640 .
srip63954 chr20 23412776 23412776 + L1-Ta germline . yes 640 .
srip65137 chr20 51779972 51779972 - L1-Ta germline . yes 640 TSHZ2
srip66564 chr21 26825400 26825400 + L1-Ta germline . no 640 .
srip66893 chr21 29069173 29069173 + L1-Ta germline . no 640 .
srip67726 chr22 22715585 22715585 + L1-Ta germline . no 640 IGL@
srip68213 chr22 29065287 29065287 + L1-Ta germline . yes 640 TTC28
srip69658 chr3 656444 656444 - L1-Ta germline validated no 640 .
srip69728 chr3 2050178 2050178 + L1-Ta germline . yes 640 .
srip69854 chr3 4080917 4080917 - L1-Ta germline . yes 640 .
srip70882 chr3 26439488 26439488 - L1-Ta germline . no 640 .
srip71397 chr3 34694359 34694359 - L1-Ta germline . yes 640 .
srip71980 chr3 41821477 41821477 + L1-Ta germline . yes 640 ULK4
srip72093 chr3 46824583 46824583 - L1-Ta germline . no 640 .
srip74410 chr3 80590157 80590157 - L1-Ta germline . no 640 .
srip74584 chr3 81770349 81770349 + L1-Ta germline . yes 640 GBE1
srip75941 chr3 90389460 90389460 + L1-Ta germline . no 640 .
srip76373 chr3 103275235 103275235 - L1-Ta germline . no 640 .
srip76462 chr3 105473860 105473860 - L1-Ta germline . no 640 CBLB
srip76513 chr3 105473864 105473864 - L1-Ta germline . no 640 CBLB
srip76558 chr3 108924737 108924737 + L1-Ta germline . yes 640 .
srip76636 chr3 109836400 109836400 - L1-Ta germline . no 640 .
srip76760 chr3 116084880 116084880 + L1-Ta germline . no 640 LSAMP-AS1;LSAMP
srip76835 chr3 119581390 119581390 + L1-Ta germline . no 640 GSK3B
srip77350 chr3 129972765 129972765 + L1-Ta germline . yes 640 COL6A4P2
srip77414 chr3 130352893 130352893 + L1-Ta germline . yes 640 COL6A6
srip77552 chr3 132664831 132664831 - L1-Ta germline . no 640 .
srip77777 chr3 136682446 136682446 - L1-Ta germline . no 640 IL20RB
srip78906 chr3 154632590 154632590 + L1-Ta germline . yes 640 .
srip79202 chr3 158813156 158813156 - L1-Ta germline . yes 640 IQCJ;IQCJ-SCHIP1
srip80200 chr3 175677955 175677955 - L1-Ta germline . no 640 .
srip80873 chr3 181192904 181192904 + L1-Ta germline . no 640 .
srip80900 chr3 182952475 182952475 - L1-Ta germline . no 640 MCF2L2
srip82322 chr4 7995690 7995690 - L1-Ta germline . no 640 ABLIM2
srip82617 chr4 15849204 15849204 + L1-Ta germline . no 640 CD38
srip82685 chr4 16950725 16950725 + L1-Ta germline . yes 640 .
srip83276 chr4 19170950 19170950 + L1-Ta germline . no 640 .
srip83813 chr4 29321850 29321850 + L1-Ta germline . no 640 .
srip84516 chr4 46058194 46058194 + L1-Ta germline . no 640 GABRG1
srip84542 chr4 46799112 46799112 + L1-Ta germline . yes 640 COX7B2
srip84590 chr4 46883027 46883027 + L1-Ta germline . no 640 .
srip84928 chr4 48416463 48416463 - L1-Ta germline . no 640 SLAIN2
srip84982 chr4 48738022 48738022 + L1-Ta germline . no 640 FRYL
srip85387 chr4 57497063 57497063 - L1-Ta germline . no 640 .
srip85844 chr4 59442445 59442445 - L1-Ta germline . no 640 .
srip87018 chr4 71093305 71093305 + L1-Ta germline . no 640 C4orf7
srip87148 chr4 79032904 79032904 + L1-Ta germline . yes 640 FRAS1
srip87458 chr4 80894074 80894074 + L1-Ta germline . yes 640 ANTXR2
srip87720 chr4 82931377 82931377 + L1-Ta germline . yes 640 .
srip87903 chr4 86607955 86607955 + L1-Ta germline . no 640 ARHGAP24
srip88051 chr4 88486275 88486275 + L1-Ta germline . yes 640 .
srip88327 chr4 99513572 99513572 - L1-Ta germline . no 640 TSPAN5
srip89261 chr4 107492188 107492188 - L1-Ta germline . no 640 .
srip89882 chr4 112628959 112628959 + L1-Ta germline . no 640 .
srip90413 chr4 117124963 117124963 - L1-Ta germline . no 640 .
srip92289 chr4 136006539 136006539 + L1-Ta germline . no 640 .
srip93149 chr4 147543284 147543284 + L1-Ta germline . no 640 .
srip94125 chr4 167369021 167369021 - L1-Ta germline . no 640 .
srip94442 chr4 170281916 170281916 - L1-Ta germline . no 640 .
srip94497 chr4 170436610 170436610 - L1-Ta germline . no 640 NEK1
srip94558 chr4 172217522 172217522 - L1-Ta germline . no 640 .
srip95088 chr4 182695155 182695155 - L1-Ta germline . no 640 .
srip95724 chr5 7603653 7603653 - L1-Ta germline . no 640 ADCY2
srip96387 chr5 12197468 12197468 - L1-Ta germline . yes 640 .
srip96838 chr5 20644380 20644380 - L1-Ta germline . no 640 .
srip97771 chr5 33633345 33633345 - L1-Ta germline . no 640 ADAMTS12
srip98815 chr5 51488295 51488295 - L1-Ta germline . no 640 .
srip99524 chr5 68263470 68263470 - L1-Ta germline . no 640 .
srip101422 chr5 99981611 99981611 + L1-Ta germline . yes 640 .
srip101714 chr5 108601132 108601132 + L1-Ta germline . no 640 .
srip102222 chr5 109480258 109480258 - L1-Ta germline validated no 640 .
srip102563 chr5 110474800 110474800 + L1-Ta germline . yes 640 .
srip102614 chr5 110643939 110643939 + L1-Ta germline . yes 640 CAMK4
srip102804 chr5 118941211 118941211 + L1-Ta germline . no 640 .
srip103003 chr5 124907258 124907258 + L1-Ta germline . yes 640 .
srip103436 chr5 132924977 132924977 + L1-Ta germline . yes 640 FSTL4
srip103911 chr5 138420464 138420464 + L1-Ta germline . yes 640 SIL1
srip104243 chr5 144473640 144473640 + L1-Ta germline . no 640 .
srip104909 chr5 155488954 155488954 - L1-Ta germline . yes 640 .
srip105129 chr5 155619862 155619862 + L1-Ta germline . no 640 .
srip105525 chr5 159351193 159351193 - L1-Ta germline . no 640 ADRA1B
srip105859 chr5 165848548 165848548 + L1-Ta germline . yes 640 .
srip106035 chr5 172829796 172829796 - L1-Ta germline . no 640 .
srip106607 chr6 2418002 2418002 - L1-Ta germline . no 640 .
srip107497 chr6 13503038 13503038 + L1-Ta germline . no 640 .
srip107667 chr6 18910854 18910854 - L1-Ta germline . no 640 .
srip108190 chr6 39645329 39645329 - L1-Ta germline . yes 640 KIF6
srip108740 chr6 48868435 48868435 - L1-Ta germline . no 640 .
srip108772 chr6 50611605 50611605 - L1-Ta germline . no 640 .
srip108854 chr6 55594843 55594843 - L1-Ta germline . no 640 .
srip109830 chr6 66787597 66787597 - L1-Ta germline . no 640 .
srip110677 chr6 77379936 77379936 - L1-Ta germline . no 640 .
srip111353 chr6 84049691 84049691 + L1-Ta germline . yes 640 ME1
srip112000 chr6 91669505 91669505 - L1-Ta germline . no 640 .
srip112907 chr6 113030984 113030984 + L1-Ta germline . no 640 LOC100287612
srip113515 chr6 133341827 133341827 - L1-Ta germline . no 640 .
srip113562 chr6 136712687 136712687 + L1-Ta germline . yes 640 MAP7
srip113827 chr6 142450109 142450109 - L1-Ta germline . no 640 .
srip114332 chr6 148163569 148163569 + L1-Ta germline . no 640 .
srip115206 chr6 160829673 160829673 - L1-Ta germline . no 640 SLC22A3
srip115739 chr6 162404960 162404960 + L1-Ta germline . no 640 PARK2
srip116226 chr7 11561087 11561087 - L1-Ta germline . no 640 THSD7A
srip116520 chr7 25081462 25081462 - L1-Ta germline . no 640 .
srip116643 chr7 28783416 28783416 - L1-Ta germline . no 640 CREB5
srip116707 chr7 30484894 30484894 + L1-Ta germline . no 640 NOD1
srip117095 chr7 45733735 45733735 + L1-Ta germline . no 640 ADCY1
srip118552 chr7 69668336 69668336 + L1-Ta germline . yes 640 AUTS2
srip118610 chr7 69828469 69828469 + L1-Ta germline . no 640 AUTS2
srip119651 chr7 84901721 84901721 - L1-Ta germline . no 640 .
srip120687 chr7 92857543 92857543 - L1-Ta germline . no 640 .
srip121430 chr7 107829247 107829247 + L1-Ta germline . no 640 NRCAM
srip122058 chr7 109548699 109548699 + L1-Ta germline . no 640 .
srip122315 chr7 111609264 111609264 + L1-Ta germline . yes 640 DOCK4
srip122476 chr7 113139394 113139394 + L1-Ta germline . yes 640 .
srip122994 chr7 129507566 129507566 + L1-Ta germline . no 640 UBE2H
srip123052 chr7 130386823 130386823 - L1-Ta germline . no 640 .
srip123187 chr7 141620449 141620449 - L1-Ta germline . no 640 .
srip123441 chr7 145063368 145063368 + L1-Ta germline . yes 640 .
srip124331 chr8 5829277 5829277 - L1-Ta germline . no 640 .
srip124770 chr8 9597567 9597567 + L1-Ta germline . yes 640 TNKS
srip124991 chr8 18768149 18768149 + L1-Ta germline . yes 640 PSD3
srip127536 chr8 75723721 75723721 + L1-Ta germline . no 640 .
srip128494 chr8 97911008 97911008 + L1-Ta germline . yes 640 PGCP
srip128649 chr8 100233000 100233000 - L1-Ta germline . no 640 VPS13B
srip128737 chr8 105540080 105540080 + L1-Ta germline . no 640 LRP12
srip128907 chr8 114072203 114072203 - L1-Ta germline . no 640 CSMD3
srip130394 chr8 137450317 137450317 - L1-Ta germline . yes 640 .
srip131613 chr9 10137698 10137698 + L1-Ta germline . yes 640 PTPRD
srip131886 chr9 28111894 28111894 - L1-Ta germline . yes 640 LINGO2
srip133191 chr9 32463884 32463884 - L1-Ta germline . no 640 DDX58
srip134097 chr9 80014129 80014129 + L1-Ta germline . no 640 VPS13A
srip134278 chr9 86065262 86065262 - L1-Ta germline . no 640 FRMD3
srip134564 chr9 98465870 98465870 + L1-Ta germline . yes 640 .
srip134726 chr9 102615582 102615582 - L1-Ta germline . no 640 NR4A3
srip134784 chr9 103749297 103749297 + L1-Ta germline . no 640 .
srip135208 chr9 106501597 106501597 - L1-Ta germline . no 640 .
srip135630 chr9 113185472 113185472 + L1-Ta germline . no 640 SVEP1
srip135659 chr9 115560387 115560387 - L1-Ta germline . no 640 SNX30
srip136333 chrX 11731399 11731399 + L1-Ta germline . yes 640 .
srip136950 chrX 45449426 45449426 + L1-Ta germline . no 640 .
srip137042 chrX 49784005 49784005 - L1-Ta germline . no 640 CLCN5
srip137978 chrX 63233094 63233094 - L1-Ta germline . no 640 .
srip138280 chrX 64430988 64430988 + L1-Ta germline . no 640 .
srip138359 chrX 67263241 67263241 + L1-Ta germline . no 640 OPHN1
srip138728 chrX 75543182 75543182 - L1-Ta germline . no 640 .
srip139017 chrX 75949601 75949601 + L1-Ta germline . no 640 .
srip139281 chrX 84028703 84028703 - L1-Ta germline . no 640 .
srip139327 chrX 85609830 85609830 + L1-Ta germline . yes 640 DACH2
srip139504 chrX 94857127 94857127 + L1-Ta germline . yes 640 .
srip140152 chrX 105718545 105718545 + L1-Ta germline . yes 640 .
srip140242 chrX 111229525 111229525 - L1-Ta germline . no 640 TRPC5
srip140830 chrX 120397638 120397638 - L1-Ta germline . no 640 .
srip141601 chrX 137146500 137146500 + L1-Ta germline . no 640 .
srip142110 chrX 154745667 154745667 - L1-Ta germline . no 640 TMLHE