euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

234 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip898 chr1 56834937 56834937 + L1-Ta germline . yes 636 .
srip1674 chr1 75192713 75192713 - L1-Ta germline . no 636 CRYZ
srip2121 chr1 86398798 86398798 + L1-Ta germline . no 636 COL24A1
srip2207 chr1 87144762 87144762 - L1-Ta germline . no 636 .
srip2567 chr1 99678977 99678977 - L1-Ta germline . no 636 .
srip2620 chr1 99854086 99854086 - L1-Ta germline . no 636 .
srip2820 chr1 101978990 101978990 - L1-Ta germline . no 636 .
srip3215 chr1 105386449 105386449 - L1-Ta germline . no 636 .
srip4072 chr1 149308424 149308424 + L1-Ta germline . no 636 LOC645262
srip4544 chr1 163231881 163231881 - L1-Ta germline . no 636 LOC100505773
srip4783 chr1 165940104 165940104 - L1-Ta germline . yes 636 .
srip4820 chr1 166212290 166212290 - L1-Ta germline . yes 636 .
srip5238 chr1 176721478 176721478 + L1-Ta germline . yes 636 PAPPA2
srip6106 chr1 193836827 193836827 + L1-Ta germline . yes 636 .
srip7021 chr1 228058514 228058514 - L1-Ta germline . yes 636 .
srip7581 chr10 5293335 5293335 + L1-Ta germline . yes 636 .
srip8688 chr10 32929792 32929792 - L1-Ta germline . no 636 C10orf68
srip8946 chr10 58863547 58863547 - L1-Ta germline . no 636 .
srip10048 chr10 87121396 87121396 + L1-Ta germline . no 636 .
srip10763 chr10 107137008 107137008 - L1-Ta germline . no 636 .
srip11258 chr10 110846814 110846814 + L1-Ta germline . yes 636 .
srip12592 chr11 15995864 15995864 - L1-Ta germline . no 636 SOX6
srip13644 chr11 33670122 33670122 + L1-Ta germline validated no 636 C11orf41
srip14835 chr11 48755930 48755930 + L1-Ta germline . no 636 .
srip17365 chr11 99478828 99478828 + L1-Ta germline . yes 636 CNTN5
srip18301 chr11 115209587 115209587 - L1-Ta germline . no 636 CADM1
srip20270 chr12 14335361 14335361 + L1-Ta germline . yes 636 .
srip22433 chr12 44501995 44501995 - L1-Ta germline . yes 636 TMEM117
srip22994 chr12 61396241 61396241 - L1-Ta germline . no 636 .
srip23388 chr12 70167057 70167057 - L1-Ta germline . no 636 RAB3IP
srip24034 chr12 79570815 79570815 - L1-Ta germline . no 636 SYT1
srip25265 chr12 98672913 98672913 + L1-Ta germline . yes 636 .
srip27510 chr13 30215833 30215833 - L1-Ta germline . no 636 .
srip27569 chr13 33441812 33441812 - L1-Ta germline . no 636 .
srip28344 chr13 57793451 57793451 - L1-Ta germline . no 636 .
srip28453 chr13 59088395 59088395 + L1-Ta germline . no 636 .
srip28679 chr13 61462318 61462318 - L1-Ta germline . no 636 .
srip29421 chr13 61734484 61734484 + L1-Ta germline . no 636 .
srip29692 chr13 63689190 63689190 - L1-Ta germline validated no 636 .
srip30515 chr13 77186902 77186902 - L1-Ta germline . no 636 .
srip32033 chr13 86502081 86502081 + L1-Ta germline . no 636 .
srip32197 chr13 88851194 88851194 - L1-Ta germline . no 636 .
srip32431 chr13 92855881 92855881 + L1-Ta germline . yes 636 GPC5
srip33678 chr13 104704163 104704163 + L1-Ta germline . yes 636 .
srip34317 chr14 20554442 20554442 - L1-Ta germline . no 636 .
srip36354 chr14 40098407 40098407 - L1-Ta germline . no 636 .
srip37094 chr14 52532174 52532174 - L1-Ta germline . no 636 NID2
srip37981 chr14 71020049 71020049 + L1-Ta germline . no 636 .
srip38126 chr14 71197779 71197779 + L1-Ta germline validated no 636 MAP3K9
srip39083 chr15 24383900 24383900 + L1-Ta germline . yes 636 .
srip40815 chr15 53448042 53448042 - L1-Ta germline . no 636 .
srip41783 chr15 71027483 71027483 + L1-Ta germline . yes 636 UACA
srip43825 chr16 7925421 7925421 + L1-Ta germline . no 636 .
srip45810 chr16 61079187 61079187 + L1-Ta germline . no 636 .
srip45917 chr16 65729907 65729907 + L1-Ta germline . yes 636 .
srip47408 chr17 29659591 29659591 - L1-Ta germline . no 636 NF1
srip47463 chr17 32192799 32192799 + L1-Ta germline . yes 636 ACCN1
srip48685 chr18 5332408 5332408 - L1-Ta germline . no 636 .
srip49042 chr18 23067399 23067399 + L1-Ta germline . no 636 .
srip49719 chr18 34567457 34567457 + L1-Ta germline . yes 636 KIAA1328
srip50982 chr18 59579963 59579963 + L1-Ta germline . no 636 .
srip51029 chr18 59763726 59763726 - L1-Ta germline . no 636 PIGN
srip51104 chr18 61030433 61030433 - L1-Ta germline . no 636 KDSR
srip51190 chr18 63446487 63446487 - L1-Ta germline . no 636 CDH7
srip51260 chr18 68413712 68413712 - L1-Ta germline . no 636 .
srip51330 chr18 69024727 69024727 + L1-Ta germline . yes 636 .
srip52477 chr19 55091547 55091547 - L1-Ta germline . no 636 LILRA2
srip52657 chr2 5298952 5298952 + L1-Ta germline . no 636 .
srip53082 chr2 18021715 18021715 - L1-Ta germline validated no 636 .
srip54356 chr2 41777137 41777137 - L1-Ta germline . no 636 .
srip54552 chr2 42051402 42051402 + L1-Ta germline . no 636 .
srip54932 chr2 53460056 53460056 + L1-Ta germline . no 636 .
srip55930 chr2 81834768 81834768 - L1-Ta germline . no 636 .
srip56277 chr2 83068216 83068216 + L1-Ta germline . yes 636 .
srip56966 chr2 108631988 108631988 - L1-Ta germline . no 636 .
srip57309 chr2 116246475 116246475 + L1-Ta germline . no 636 DPP10
srip57372 chr2 118667183 118667183 - L1-Ta germline . no 636 .
srip57588 chr2 126510571 126510571 + L1-Ta germline . yes 636 .
srip57768 chr2 130439851 130439851 - L1-Ta germline . no 636 .
srip58331 chr2 142788891 142788891 - L1-Ta germline . no 636 LRP1B
srip58619 chr2 144624534 144624534 + L1-Ta germline . yes 636 .
srip59812 chr2 170111155 170111155 + L1-Ta germline . yes 636 LRP2
srip59910 chr2 176346680 176346680 - L1-Ta germline . no 636 .
srip60756 chr2 191478703 191478703 - L1-Ta germline . no 636 .
srip61294 chr2 205631655 205631655 - L1-Ta germline . no 636 PARD3B
srip61725 chr2 214647628 214647628 - L1-Ta germline . no 636 SPAG16
srip61793 chr2 218176494 218176494 + L1-Ta germline . yes 636 DIRC3
srip62194 chr2 223904435 223904435 + L1-Ta germline . no 636 .
srip62684 chr2 239902375 239902375 - L1-Ta germline . no 636 .
srip63004 chr20 7096788 7096788 - L1-Ta germline . no 636 .
srip63267 chr20 12781652 12781652 - L1-Ta germline . no 636 .
srip64735 chr20 41952103 41952103 - L1-Ta germline . no 636 .
srip65133 chr20 51779972 51779972 - L1-Ta germline . yes 636 TSHZ2
srip65881 chr21 19517309 19517309 - L1-Ta germline . no 636 .
srip66063 chr21 20381800 20381800 + L1-Ta germline . no 636 .
srip66500 chr21 24125137 24125137 + L1-Ta germline . yes 636 .
srip66563 chr21 26825400 26825400 + L1-Ta germline . no 636 .
srip66890 chr21 29069173 29069173 + L1-Ta germline . no 636 .
srip67461 chr22 22486374 22486374 - L1-Ta germline . no 636 IGL@
srip68209 chr22 29065287 29065287 + L1-Ta germline . yes 636 TTC28
srip69654 chr3 656444 656444 - L1-Ta germline validated no 636 .
srip69724 chr3 2050178 2050178 + L1-Ta germline . yes 636 .
srip69851 chr3 4080917 4080917 - L1-Ta germline . yes 636 .
srip70826 chr3 25740941 25740941 - L1-Ta germline . no 636 .
srip70878 chr3 26439488 26439488 - L1-Ta germline . no 636 .
srip71344 chr3 33554072 33554072 + L1-Ta germline . no 636 CLASP2
srip71396 chr3 34694359 34694359 - L1-Ta germline . yes 636 .
srip73949 chr3 77812776 77812776 - L1-Ta germline . no 636 .
srip74580 chr3 81770349 81770349 + L1-Ta germline . yes 636 GBE1
srip74720 chr3 81991002 81991002 - L1-Ta germline . no 636 .
srip74984 chr3 84433383 84433383 + L1-Ta germline . no 636 .
srip76369 chr3 103275235 103275235 - L1-Ta germline . no 636 .
srip76458 chr3 105473860 105473860 - L1-Ta germline . no 636 CBLB
srip76632 chr3 109836400 109836400 - L1-Ta germline . no 636 .
srip76759 chr3 116084880 116084880 + L1-Ta germline . no 636 LSAMP-AS1;LSAMP
srip76833 chr3 119581390 119581390 + L1-Ta germline . no 636 GSK3B
srip76869 chr3 120807965 120807965 + L1-Ta germline . no 636 STXBP5L
srip77094 chr3 123590712 123590712 + L1-Ta germline validated no 636 MYLK
srip77346 chr3 129972765 129972765 + L1-Ta germline . yes 636 COL6A4P2
srip77410 chr3 130352893 130352893 + L1-Ta germline . yes 636 COL6A6
srip77776 chr3 136682446 136682446 - L1-Ta germline . no 636 IL20RB
srip77798 chr3 137073450 137073450 + L1-Ta germline . no 636 .
srip78902 chr3 154632590 154632590 + L1-Ta germline . yes 636 .
srip79198 chr3 158813156 158813156 - L1-Ta germline . yes 636 IQCJ;IQCJ-SCHIP1
srip79659 chr3 166921977 166921977 - L1-Ta germline . no 636 .
srip82613 chr4 15849204 15849204 + L1-Ta germline . no 636 CD38
srip82682 chr4 16950725 16950725 + L1-Ta germline . yes 636 .
srip83275 chr4 19170950 19170950 + L1-Ta germline . no 636 .
srip83582 chr4 26929329 26929329 + L1-Ta germline . no 636 STIM2
srip83811 chr4 29321850 29321850 + L1-Ta germline . no 636 .
srip84588 chr4 46883027 46883027 + L1-Ta germline . no 636 .
srip84925 chr4 48416463 48416463 - L1-Ta germline . no 636 SLAIN2
srip84978 chr4 48738022 48738022 + L1-Ta germline . no 636 FRYL
srip85036 chr4 49057917 49057917 - L1-Ta germline . no 636 CWH43
srip85571 chr4 58428313 58428313 - L1-Ta germline . no 636 .
srip85606 chr4 58888335 58888335 + L1-Ta germline . no 636 .
srip85840 chr4 59442445 59442445 - L1-Ta germline . no 636 .
srip86318 chr4 66809073 66809073 - L1-Ta germline . no 636 .
srip87063 chr4 71200089 71200089 + L1-Ta germline . no 636 .
srip87145 chr4 79032904 79032904 + L1-Ta germline . yes 636 FRAS1
srip87719 chr4 82931377 82931377 + L1-Ta germline . yes 636 .
srip88323 chr4 99513572 99513572 - L1-Ta germline . no 636 TSPAN5
srip89258 chr4 107492188 107492188 - L1-Ta germline . no 636 .
srip89705 chr4 112411157 112411157 + L1-Ta germline . no 636 .
srip91164 chr4 127596258 127596258 + L1-Ta germline . no 636 .
srip92229 chr4 134596424 134596424 + L1-Ta germline . no 636 .
srip92285 chr4 136006539 136006539 + L1-Ta germline . no 636 .
srip93146 chr4 147543284 147543284 + L1-Ta germline . no 636 .
srip94123 chr4 167369021 167369021 - L1-Ta germline . no 636 .
srip94373 chr4 167683070 167683070 + L1-Ta germline . no 636 SPOCK3
srip94438 chr4 170281916 170281916 - L1-Ta germline . no 636 .
srip94493 chr4 170436610 170436610 - L1-Ta germline . no 636 NEK1
srip94557 chr4 172217522 172217522 - L1-Ta germline . no 636 .
srip95084 chr4 182695155 182695155 - L1-Ta germline . no 636 .
srip95722 chr5 7603653 7603653 - L1-Ta germline . no 636 ADCY2
srip96836 chr5 20644380 20644380 - L1-Ta germline . no 636 .
srip97769 chr5 33633345 33633345 - L1-Ta germline . no 636 ADAMTS12
srip98812 chr5 51488295 51488295 - L1-Ta germline . no 636 .
srip101418 chr5 99981611 99981611 + L1-Ta germline . yes 636 .
srip101505 chr5 105483500 105483500 - L1-Ta germline . no 636 .
srip102219 chr5 109480258 109480258 - L1-Ta germline validated no 636 .
srip102559 chr5 110474800 110474800 + L1-Ta germline . yes 636 .
srip102611 chr5 110643939 110643939 + L1-Ta germline . yes 636 CAMK4
srip102801 chr5 118941211 118941211 + L1-Ta germline . no 636 .
srip103435 chr5 132924977 132924977 + L1-Ta germline . yes 636 FSTL4
srip103907 chr5 138420464 138420464 + L1-Ta germline . yes 636 SIL1
srip104239 chr5 144473640 144473640 + L1-Ta germline . no 636 .
srip104338 chr5 147337963 147337963 - L1-Ta germline . no 636 .
srip104905 chr5 155488954 155488954 - L1-Ta germline . yes 636 .
srip105127 chr5 155619862 155619862 + L1-Ta germline . no 636 .
srip105522 chr5 159351193 159351193 - L1-Ta germline . no 636 ADRA1B
srip105856 chr5 165848548 165848548 + L1-Ta germline . yes 636 .
srip106032 chr5 172829796 172829796 - L1-Ta germline . no 636 .
srip106603 chr6 2418002 2418002 - L1-Ta germline . no 636 .
srip107664 chr6 18910854 18910854 - L1-Ta germline . no 636 .
srip108186 chr6 39645329 39645329 - L1-Ta germline . yes 636 KIF6
srip108770 chr6 50611605 50611605 - L1-Ta germline . no 636 .
srip108850 chr6 55594843 55594843 - L1-Ta germline . no 636 .
srip109826 chr6 66787597 66787597 - L1-Ta germline . no 636 .
srip109881 chr6 67313668 67313668 + L1-Ta germline . yes 636 .
srip111997 chr6 91669505 91669505 - L1-Ta germline . no 636 .
srip112903 chr6 113030984 113030984 + L1-Ta germline . no 636 LOC100287612
srip113081 chr6 115899917 115899917 - L1-Ta germline . no 636 .
srip113135 chr6 117429369 117429369 + L1-Ta germline . no 636 .
srip113164 chr6 121489953 121489953 + L1-Ta germline . no 636 C6orf170
srip113390 chr6 125163000 125163000 + L1-Ta germline . no 636 .
srip113400 chr6 125643206 125643206 + L1-Ta germline . yes 636 .
srip113558 chr6 136712687 136712687 + L1-Ta germline . yes 636 MAP7
srip114329 chr6 148163569 148163569 + L1-Ta germline . no 636 .
srip116008 chr6 163597691 163597691 + L1-Ta germline validated no 636 LOC729658;PACRG
srip116639 chr7 28783416 28783416 - L1-Ta germline . no 636 CREB5
srip116703 chr7 30484894 30484894 + L1-Ta germline . no 636 NOD1
srip117094 chr7 45733735 45733735 + L1-Ta germline . no 636 ADCY1
srip118548 chr7 69668336 69668336 + L1-Ta germline . yes 636 AUTS2
srip118607 chr7 69828469 69828469 + L1-Ta germline . no 636 AUTS2
srip120432 chr7 89704574 89704574 + L1-Ta germline . no 636 .
srip121427 chr7 107829247 107829247 + L1-Ta germline . no 636 NRCAM
srip122054 chr7 109548699 109548699 + L1-Ta germline . no 636 .
srip122311 chr7 111609264 111609264 + L1-Ta germline . yes 636 DOCK4
srip122473 chr7 113139394 113139394 + L1-Ta germline . yes 636 .
srip122990 chr7 129507566 129507566 + L1-Ta germline . no 636 UBE2H
srip123048 chr7 130386823 130386823 - L1-Ta germline . no 636 .
srip123183 chr7 141620449 141620449 - L1-Ta germline . no 636 .
srip123704 chr7 154155053 154155053 + L1-Ta germline . yes 636 DPP6
srip124327 chr8 5829277 5829277 - L1-Ta germline . no 636 .
srip124766 chr8 9597567 9597567 + L1-Ta germline . yes 636 TNKS
srip124987 chr8 18768149 18768149 + L1-Ta germline . yes 636 PSD3
srip128310 chr8 89703984 89703984 + L1-Ta germline . no 636 .
srip128490 chr8 97911008 97911008 + L1-Ta germline . yes 636 PGCP
srip128645 chr8 100233000 100233000 - L1-Ta germline . no 636 VPS13B
srip128903 chr8 114072203 114072203 - L1-Ta germline . no 636 CSMD3
srip130390 chr8 137450317 137450317 - L1-Ta germline . yes 636 .
srip130496 chr9 1337904 1337904 - L1-Ta germline . no 636 .
srip131609 chr9 10137698 10137698 + L1-Ta germline . yes 636 PTPRD
srip131883 chr9 28111894 28111894 - L1-Ta germline . yes 636 LINGO2
srip133187 chr9 32463884 32463884 - L1-Ta germline . no 636 DDX58
srip134093 chr9 80014129 80014129 + L1-Ta germline . no 636 VPS13A
srip134276 chr9 86065262 86065262 - L1-Ta germline . no 636 FRMD3
srip134560 chr9 98465870 98465870 + L1-Ta germline . yes 636 .
srip134722 chr9 102615582 102615582 - L1-Ta germline . no 636 NR4A3
srip135104 chr9 105162482 105162482 - L1-Ta germline . no 636 .
srip135628 chr9 113185472 113185472 + L1-Ta germline . no 636 SVEP1
srip136884 chrX 34837319 34837319 - L1-Ta germline . no 636 .
srip137974 chrX 63233094 63233094 - L1-Ta germline . no 636 .
srip138358 chrX 67263241 67263241 + L1-Ta germline . no 636 OPHN1
srip138466 chrX 72606851 72606851 + L1-Ta germline . no 636 .
srip138724 chrX 75543182 75543182 - L1-Ta germline . no 636 .
srip140149 chrX 105718545 105718545 + L1-Ta germline . yes 636 .
srip140827 chrX 120397638 120397638 - L1-Ta germline . no 636 .
srip141421 chrX 130140534 130140534 + L1-Ta germline . no 636 .
srip141598 chrX 137146500 137146500 + L1-Ta germline . no 636 .
srip141982 chrX 141571641 141571641 + L1-Ta germline . yes 636 .
srip142106 chrX 154745667 154745667 - L1-Ta germline . no 636 TMLHE
srip142302 chrY 13546967 13546967 - L1-Ta germline . no 636 .