euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

243 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip46 chr1 12875996 12875996 - L1-Ta germline . no 635 .
srip173 chr1 31041664 31041664 + L1-Ta germline . no 635 .
srip897 chr1 56834937 56834937 + L1-Ta germline . yes 635 .
srip1617 chr1 74984526 74984526 - L1-Ta germline . no 635 FPGT-TNNI3K;TNNI3K
srip2120 chr1 86398798 86398798 + L1-Ta germline . no 635 COL24A1
srip2206 chr1 87144762 87144762 - L1-Ta germline . no 635 .
srip2619 chr1 99854086 99854086 - L1-Ta germline . no 635 .
srip2819 chr1 101978990 101978990 - L1-Ta germline . no 635 .
srip3214 chr1 105386449 105386449 - L1-Ta germline . no 635 .
srip3944 chr1 121478354 121478354 + L1-Ta germline . yes 635 .
srip4071 chr1 149308424 149308424 + L1-Ta germline . no 635 LOC645262
srip4184 chr1 152462236 152462236 - L1-Ta germline . no 635 .
srip4259 chr1 158238664 158238664 + L1-Ta germline . yes 635 .
srip4543 chr1 163231881 163231881 - L1-Ta germline . no 635 LOC100505773
srip4782 chr1 165940104 165940104 - L1-Ta germline . yes 635 .
srip5237 chr1 176721478 176721478 + L1-Ta germline . yes 635 PAPPA2
srip5816 chr1 192072266 192072266 - L1-Ta germline . no 635 .
srip6105 chr1 193836827 193836827 + L1-Ta germline . yes 635 .
srip7020 chr1 228058514 228058514 - L1-Ta germline . yes 635 .
srip7580 chr10 5293335 5293335 + L1-Ta germline . yes 635 .
srip8687 chr10 32929792 32929792 - L1-Ta germline . no 635 C10orf68
srip8818 chr10 42527965 42527965 + L1-Ta germline . no 635 .
srip8945 chr10 58863547 58863547 - L1-Ta germline . no 635 .
srip10762 chr10 107137008 107137008 - L1-Ta germline . no 635 .
srip11257 chr10 110846814 110846814 + L1-Ta germline . yes 635 .
srip12591 chr11 15995864 15995864 - L1-Ta germline . no 635 SOX6
srip12685 chr11 24355519 24355519 + L1-Ta germline . yes 635 .
srip13643 chr11 33670122 33670122 + L1-Ta germline validated no 635 C11orf41
srip14834 chr11 48755930 48755930 + L1-Ta germline . no 635 .
srip17219 chr11 94684419 94684419 + L1-Ta germline . no 635 .
srip17364 chr11 99478828 99478828 + L1-Ta germline . yes 635 CNTN5
srip20269 chr12 14335361 14335361 + L1-Ta germline . yes 635 .
srip20333 chr12 17894177 17894177 - L1-Ta germline . no 635 .
srip22432 chr12 44501995 44501995 - L1-Ta germline . yes 635 TMEM117
srip22993 chr12 61396241 61396241 - L1-Ta germline . no 635 .
srip23387 chr12 70167057 70167057 - L1-Ta germline . no 635 RAB3IP
srip24033 chr12 79570815 79570815 - L1-Ta germline . no 635 SYT1
srip24954 chr12 86633816 86633816 + L1-Ta germline . yes 635 MGAT4C
srip25264 chr12 98672913 98672913 + L1-Ta germline . yes 635 .
srip25344 chr12 102842494 102842494 + L1-Ta germline . no 635 IGF1
srip27568 chr13 33441812 33441812 - L1-Ta germline . no 635 .
srip28343 chr13 57793451 57793451 - L1-Ta germline . no 635 .
srip28452 chr13 59088395 59088395 + L1-Ta germline . no 635 .
srip29420 chr13 61734484 61734484 + L1-Ta germline . no 635 .
srip32032 chr13 86502081 86502081 + L1-Ta germline . no 635 .
srip32196 chr13 88851194 88851194 - L1-Ta germline . no 635 .
srip32430 chr13 92855881 92855881 + L1-Ta germline . yes 635 GPC5
srip34316 chr14 20554442 20554442 - L1-Ta germline . no 635 .
srip34384 chr14 24582584 24582584 + L1-Ta germline . yes 635 .
srip36386 chr14 41197899 41197899 - L1-Ta germline . no 635 .
srip37005 chr14 48662336 48662336 + L1-Ta germline . no 635 .
srip37980 chr14 71020049 71020049 + L1-Ta germline . no 635 .
srip38868 chr14 95605326 95605326 + L1-Ta germline . no 635 DICER1
srip38959 chr15 20022208 20022208 - L1-Ta germline . no 635 .
srip40756 chr15 51875289 51875289 - L1-Ta germline . no 635 DMXL2
srip40814 chr15 53448042 53448042 - L1-Ta germline . no 635 .
srip41284 chr15 58012013 58012013 - L1-Ta germline . no 635 .
srip41782 chr15 71027483 71027483 + L1-Ta germline . yes 635 UACA
srip42282 chr15 83551535 83551535 - L1-Ta germline . no 635 HOMER2
srip45809 chr16 61079187 61079187 + L1-Ta germline . no 635 .
srip45916 chr16 65729907 65729907 + L1-Ta germline . yes 635 .
srip47407 chr17 29659591 29659591 - L1-Ta germline . no 635 NF1
srip47462 chr17 32192799 32192799 + L1-Ta germline . yes 635 ACCN1
srip47596 chr17 32813608 32813608 + L1-Ta germline . no 635 .
srip48684 chr18 5332408 5332408 - L1-Ta germline . no 635 .
srip49041 chr18 23067399 23067399 + L1-Ta germline . no 635 .
srip49494 chr18 30185593 30185593 - L1-Ta germline . no 635 .
srip49718 chr18 34567457 34567457 + L1-Ta germline . yes 635 KIAA1328
srip50107 chr18 50097423 50097423 - L1-Ta germline . no 635 DCC
srip50759 chr18 51762741 51762741 - L1-Ta germline . no 635 .
srip50847 chr18 58172211 58172211 - L1-Ta germline . no 635 .
srip50981 chr18 59579963 59579963 + L1-Ta germline . no 635 .
srip51028 chr18 59763726 59763726 - L1-Ta germline . no 635 PIGN
srip51103 chr18 61030433 61030433 - L1-Ta germline . no 635 KDSR
srip51189 chr18 63446487 63446487 - L1-Ta germline . no 635 CDH7
srip51259 chr18 68413712 68413712 - L1-Ta germline . no 635 .
srip51329 chr18 69024727 69024727 + L1-Ta germline . yes 635 .
srip52476 chr19 55091547 55091547 - L1-Ta germline . no 635 LILRA2
srip54355 chr2 41777137 41777137 - L1-Ta germline . no 635 .
srip54551 chr2 42051402 42051402 + L1-Ta germline . no 635 .
srip55608 chr2 73354355 73354355 - L1-Ta germline . no 635 .
srip55929 chr2 81834768 81834768 - L1-Ta germline . no 635 .
srip56117 chr2 82098027 82098027 + L1-Ta germline . no 635 .
srip56276 chr2 83068216 83068216 + L1-Ta germline . yes 635 .
srip56965 chr2 108631988 108631988 - L1-Ta germline . no 635 .
srip57308 chr2 116246475 116246475 + L1-Ta germline . no 635 DPP10
srip57371 chr2 118667183 118667183 - L1-Ta germline . no 635 .
srip57767 chr2 130439851 130439851 - L1-Ta germline . no 635 .
srip57949 chr2 139785112 139785112 - L1-Ta germline . no 635 .
srip58618 chr2 144624534 144624534 + L1-Ta germline . yes 635 .
srip59811 chr2 170111155 170111155 + L1-Ta germline . yes 635 LRP2
srip60755 chr2 191478703 191478703 - L1-Ta germline . no 635 .
srip61293 chr2 205631655 205631655 - L1-Ta germline . no 635 PARD3B
srip61724 chr2 214647628 214647628 - L1-Ta germline . no 635 SPAG16
srip61792 chr2 218176494 218176494 + L1-Ta germline . yes 635 DIRC3
srip62683 chr2 239902375 239902375 - L1-Ta germline . no 635 .
srip63249 chr20 11619480 11619480 + L1-Ta germline . no 635 .
srip63266 chr20 12781652 12781652 - L1-Ta germline . no 635 .
srip63664 chr20 19400466 19400466 - L1-Ta germline . no 635 SLC24A3
srip63950 chr20 23412776 23412776 + L1-Ta germline . yes 635 .
srip64734 chr20 41952103 41952103 - L1-Ta germline . no 635 .
srip65238 chr20 59972437 59972437 + L1-Ta germline validated no 635 CDH4
srip66081 chr21 21031857 21031857 + L1-Ta germline . no 635 .
srip66499 chr21 24125137 24125137 + L1-Ta germline . yes 635 .
srip66889 chr21 29069173 29069173 + L1-Ta germline . no 635 .
srip67460 chr22 22486374 22486374 - L1-Ta germline . no 635 IGL@
srip67722 chr22 22715585 22715585 + L1-Ta germline . no 635 IGL@
srip68208 chr22 29065287 29065287 + L1-Ta germline . yes 635 TTC28
srip69723 chr3 2050178 2050178 + L1-Ta germline . yes 635 .
srip69850 chr3 4080917 4080917 - L1-Ta germline . yes 635 .
srip70364 chr3 20748812 20748812 - L1-Ta germline validated no 635 .
srip70877 chr3 26439488 26439488 - L1-Ta germline . no 635 .
srip71395 chr3 34694359 34694359 - L1-Ta germline . yes 635 .
srip72089 chr3 46824583 46824583 - L1-Ta germline . no 635 .
srip74719 chr3 81991002 81991002 - L1-Ta germline . no 635 .
srip74983 chr3 84433383 84433383 + L1-Ta germline . no 635 .
srip76368 chr3 103275235 103275235 - L1-Ta germline . no 635 .
srip76457 chr3 105473860 105473860 - L1-Ta germline . no 635 CBLB
srip76555 chr3 108924737 108924737 + L1-Ta germline . yes 635 .
srip76631 chr3 109836400 109836400 - L1-Ta germline . no 635 .
srip76758 chr3 116084880 116084880 + L1-Ta germline . no 635 LSAMP-AS1;LSAMP
srip77093 chr3 123590712 123590712 + L1-Ta germline validated no 635 MYLK
srip77345 chr3 129972765 129972765 + L1-Ta germline . yes 635 COL6A4P2
srip77409 chr3 130352893 130352893 + L1-Ta germline . yes 635 COL6A6
srip77775 chr3 136682446 136682446 - L1-Ta germline . no 635 IL20RB
srip77797 chr3 137073450 137073450 + L1-Ta germline . no 635 .
srip78901 chr3 154632590 154632590 + L1-Ta germline . yes 635 .
srip79197 chr3 158813156 158813156 - L1-Ta germline . yes 635 IQCJ;IQCJ-SCHIP1
srip80296 chr3 176091321 176091321 + L1-Ta germline . no 635 .
srip80897 chr3 182952475 182952475 - L1-Ta germline . no 635 MCF2L2
srip81576 chr3 187835306 187835306 - L1-Ta germline . no 635 .
srip82612 chr4 15849204 15849204 + L1-Ta germline . no 635 CD38
srip83274 chr4 19170950 19170950 + L1-Ta germline . no 635 .
srip83549 chr4 23622456 23622456 + L1-Ta germline . yes 635 .
srip83581 chr4 26929329 26929329 + L1-Ta germline . no 635 STIM2
srip83810 chr4 29321850 29321850 + L1-Ta germline . no 635 .
srip84540 chr4 46799112 46799112 + L1-Ta germline . yes 635 COX7B2
srip84587 chr4 46883027 46883027 + L1-Ta germline . no 635 .
srip84650 chr4 47007779 47007779 - L1-Ta germline . no 635 .
srip84924 chr4 48416463 48416463 - L1-Ta germline . no 635 SLAIN2
srip84977 chr4 48738022 48738022 + L1-Ta germline . no 635 FRYL
srip85035 chr4 49057917 49057917 - L1-Ta germline . no 635 CWH43
srip85605 chr4 58888335 58888335 + L1-Ta germline . no 635 .
srip85839 chr4 59442445 59442445 - L1-Ta germline . no 635 .
srip86317 chr4 66809073 66809073 - L1-Ta germline . no 635 .
srip87017 chr4 71093305 71093305 + L1-Ta germline . no 635 C4orf7
srip87144 chr4 79032904 79032904 + L1-Ta germline . yes 635 FRAS1
srip87409 chr4 80864880 80864880 + L1-Ta germline . yes 635 ANTXR2
srip87455 chr4 80894074 80894074 + L1-Ta germline . yes 635 ANTXR2
srip87718 chr4 82931377 82931377 + L1-Ta germline . yes 635 .
srip88047 chr4 88486275 88486275 + L1-Ta germline . yes 635 .
srip88322 chr4 99513572 99513572 - L1-Ta germline . no 635 TSPAN5
srip89257 chr4 107492188 107492188 - L1-Ta germline . no 635 .
srip91163 chr4 127596258 127596258 + L1-Ta germline . no 635 .
srip92284 chr4 136006539 136006539 + L1-Ta germline . no 635 .
srip92793 chr4 138177326 138177326 + L1-Ta germline . no 635 .
srip93145 chr4 147543284 147543284 + L1-Ta germline . no 635 .
srip94122 chr4 167369021 167369021 - L1-Ta germline . no 635 .
srip94372 chr4 167683070 167683070 + L1-Ta germline . no 635 SPOCK3
srip94437 chr4 170281916 170281916 - L1-Ta germline . no 635 .
srip94492 chr4 170436610 170436610 - L1-Ta germline . no 635 NEK1
srip94556 chr4 172217522 172217522 - L1-Ta germline . no 635 .
srip94607 chr4 173957423 173957423 - L1-Ta germline . no 635 GALNTL6
srip95083 chr4 182695155 182695155 - L1-Ta germline . no 635 .
srip97768 chr5 33633345 33633345 - L1-Ta germline . no 635 ADAMTS12
srip98811 chr5 51488295 51488295 - L1-Ta germline . no 635 .
srip101417 chr5 99981611 99981611 + L1-Ta germline . yes 635 .
srip101504 chr5 105483500 105483500 - L1-Ta germline . no 635 .
srip101713 chr5 108601132 108601132 + L1-Ta germline . no 635 .
srip102218 chr5 109480258 109480258 - L1-Ta germline validated no 635 .
srip102558 chr5 110474800 110474800 + L1-Ta germline . yes 635 .
srip102610 chr5 110643939 110643939 + L1-Ta germline . yes 635 CAMK4
srip102800 chr5 118941211 118941211 + L1-Ta germline . no 635 .
srip103906 chr5 138420464 138420464 + L1-Ta germline . yes 635 SIL1
srip104238 chr5 144473640 144473640 + L1-Ta germline . no 635 .
srip104904 chr5 155488954 155488954 - L1-Ta germline . yes 635 .
srip105126 chr5 155619862 155619862 + L1-Ta germline . no 635 .
srip105307 chr5 157867289 157867289 - L1-Ta germline . no 635 .
srip105855 chr5 165848548 165848548 + L1-Ta germline . yes 635 .
srip106031 chr5 172829796 172829796 - L1-Ta germline . no 635 .
srip107663 chr6 18910854 18910854 - L1-Ta germline . no 635 .
srip108185 chr6 39645329 39645329 - L1-Ta germline . yes 635 KIF6
srip108769 chr6 50611605 50611605 - L1-Ta germline . no 635 .
srip108849 chr6 55594843 55594843 - L1-Ta germline . no 635 .
srip109825 chr6 66787597 66787597 - L1-Ta germline . no 635 .
srip111350 chr6 84049691 84049691 + L1-Ta germline . yes 635 ME1
srip111996 chr6 91669505 91669505 - L1-Ta germline . no 635 .
srip112902 chr6 113030984 113030984 + L1-Ta germline . no 635 LOC100287612
srip113080 chr6 115899917 115899917 - L1-Ta germline . no 635 .
srip113163 chr6 121489953 121489953 + L1-Ta germline . no 635 C6orf170
srip113557 chr6 136712687 136712687 + L1-Ta germline . yes 635 MAP7
srip114608 chr6 148195788 148195788 + L1-Ta germline . no 635 .
srip114789 chr6 149145435 149145435 - L1-Ta germline . no 635 UST
srip115736 chr6 162404960 162404960 + L1-Ta germline . no 635 PARK2
srip116517 chr7 25081462 25081462 - L1-Ta germline . no 635 .
srip116638 chr7 28783416 28783416 - L1-Ta germline . no 635 CREB5
srip116702 chr7 30484894 30484894 + L1-Ta germline . no 635 NOD1
srip117093 chr7 45733735 45733735 + L1-Ta germline . no 635 ADCY1
srip118547 chr7 69668336 69668336 + L1-Ta germline . yes 635 AUTS2
srip118606 chr7 69828469 69828469 + L1-Ta germline . no 635 AUTS2
srip119649 chr7 84901721 84901721 - L1-Ta germline . no 635 .
srip121426 chr7 107829247 107829247 + L1-Ta germline . no 635 NRCAM
srip122053 chr7 109548699 109548699 + L1-Ta germline . no 635 .
srip122310 chr7 111609264 111609264 + L1-Ta germline . yes 635 DOCK4
srip122950 chr7 127930833 127930833 - L1-Ta germline . no 635 .
srip122989 chr7 129507566 129507566 + L1-Ta germline . no 635 UBE2H
srip123047 chr7 130386823 130386823 - L1-Ta germline . no 635 .
srip123182 chr7 141620449 141620449 - L1-Ta germline . no 635 .
srip123437 chr7 145063368 145063368 + L1-Ta germline . yes 635 .
srip124326 chr8 5829277 5829277 - L1-Ta germline . no 635 .
srip124765 chr8 9597567 9597567 + L1-Ta germline . yes 635 TNKS
srip124986 chr8 18768149 18768149 + L1-Ta germline . yes 635 PSD3
srip125628 chr8 28977684 28977684 - L1-Ta germline . no 635 KIF13B
srip126967 chr8 71583563 71583563 - L1-Ta germline . no 635 XKR9
srip128489 chr8 97911008 97911008 + L1-Ta germline . yes 635 PGCP
srip128644 chr8 100233000 100233000 - L1-Ta germline . no 635 VPS13B
srip128892 chr8 112399430 112399430 - L1-Ta germline . no 635 .
srip128902 chr8 114072203 114072203 - L1-Ta germline . no 635 CSMD3
srip128970 chr8 114687257 114687257 + L1-Ta germline . no 635 .
srip130389 chr8 137450317 137450317 - L1-Ta germline . yes 635 .
srip130495 chr9 1337904 1337904 - L1-Ta germline . no 635 .
srip131882 chr9 28111894 28111894 - L1-Ta germline . yes 635 LINGO2
srip133186 chr9 32463884 32463884 - L1-Ta germline . no 635 DDX58
srip134092 chr9 80014129 80014129 + L1-Ta germline . no 635 VPS13A
srip134275 chr9 86065262 86065262 - L1-Ta germline . no 635 FRMD3
srip134559 chr9 98465870 98465870 + L1-Ta germline . yes 635 .
srip134721 chr9 102615582 102615582 - L1-Ta germline . no 635 NR4A3
srip134781 chr9 103749297 103749297 + L1-Ta germline . no 635 .
srip135103 chr9 105162482 105162482 - L1-Ta germline . no 635 .
srip135627 chr9 113185472 113185472 + L1-Ta germline . no 635 SVEP1
srip136329 chrX 11731399 11731399 + L1-Ta germline . yes 635 .
srip137039 chrX 49784005 49784005 - L1-Ta germline . no 635 CLCN5
srip138465 chrX 72606851 72606851 + L1-Ta germline . no 635 .
srip138723 chrX 75543182 75543182 - L1-Ta germline . no 635 .
srip139014 chrX 75949601 75949601 + L1-Ta germline . no 635 .
srip139147 chrX 81102668 81102668 + L1-Ta germline . yes 635 .
srip139323 chrX 85609830 85609830 + L1-Ta germline . yes 635 DACH2
srip139500 chrX 94857127 94857127 + L1-Ta germline . yes 635 .
srip140600 chrX 118569413 118569413 - L1-Ta germline . no 635 SLC25A43
srip140826 chrX 120397638 120397638 - L1-Ta germline . no 635 .
srip141420 chrX 130140534 130140534 + L1-Ta germline . no 635 .
srip141597 chrX 137146500 137146500 + L1-Ta germline . no 635 .
srip142105 chrX 154745667 154745667 - L1-Ta germline . no 635 TMLHE