euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

253 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip331 chr1 41201714 41201714 - L1-Ta germline . no 633 NFYC
srip525 chr1 42483962 42483962 + L1-Ta germline . no 633 HIVEP3
srip829 chr1 56405396 56405396 - L1-Ta germline . no 633 LOC100507652
srip895 chr1 56834937 56834937 + L1-Ta germline . yes 633 .
srip1210 chr1 67544154 67544154 - L1-Ta germline . no 633 .
srip1565 chr1 69801801 69801801 + L1-Ta germline . no 633 .
srip1615 chr1 74984526 74984526 - L1-Ta germline . no 633 FPGT-TNNI3K;TNNI3K
srip2118 chr1 86398798 86398798 + L1-Ta germline . no 633 COL24A1
srip2204 chr1 87144762 87144762 - L1-Ta germline . no 633 .
srip2512 chr1 96981692 96981692 - L1-Ta germline . no 633 .
srip2566 chr1 99678977 99678977 - L1-Ta germline . no 633 .
srip2618 chr1 99854086 99854086 - L1-Ta germline . no 633 .
srip3212 chr1 105386449 105386449 - L1-Ta germline . no 633 .
srip3942 chr1 121478354 121478354 + L1-Ta germline . yes 633 .
srip4069 chr1 149308424 149308424 + L1-Ta germline . no 633 LOC645262
srip4257 chr1 158238664 158238664 + L1-Ta germline . yes 633 .
srip4542 chr1 163231881 163231881 - L1-Ta germline . no 633 LOC100505773
srip4780 chr1 165940104 165940104 - L1-Ta germline . yes 633 .
srip5504 chr1 180668321 180668321 - L1-Ta germline . no 633 XPR1
srip5815 chr1 192072266 192072266 - L1-Ta germline . no 633 .
srip6103 chr1 193836827 193836827 + L1-Ta germline . yes 633 .
srip6470 chr1 218182567 218182567 - L1-Ta germline . no 633 .
srip7018 chr1 228058514 228058514 - L1-Ta germline . yes 633 .
srip7578 chr10 5293335 5293335 + L1-Ta germline . yes 633 .
srip8685 chr10 32929792 32929792 - L1-Ta germline . no 633 C10orf68
srip8840 chr10 42959739 42959739 - L1-Ta germline . no 633 CCNYL2
srip8943 chr10 58863547 58863547 - L1-Ta germline . no 633 .
srip10047 chr10 87121396 87121396 + L1-Ta germline . no 633 .
srip10760 chr10 107137008 107137008 - L1-Ta germline . no 633 .
srip11255 chr10 110846814 110846814 + L1-Ta germline . yes 633 .
srip11328 chr10 111572118 111572118 - L1-Ta germline . no 633 .
srip11462 chr10 121000478 121000478 - L1-Ta germline . no 633 GRK5
srip11902 chr10 126983644 126983644 - L1-Ta germline . no 633 .
srip12589 chr11 15995864 15995864 - L1-Ta germline . no 633 SOX6
srip12683 chr11 24355519 24355519 + L1-Ta germline . yes 633 .
srip13641 chr11 33670122 33670122 + L1-Ta germline validated no 633 C11orf41
srip14400 chr11 41869864 41869864 + L1-Ta germline . no 633 .
srip14832 chr11 48755930 48755930 + L1-Ta germline . no 633 .
srip15506 chr11 59815986 59815986 - L1-Ta germline . no 633 .
srip16861 chr11 93160197 93160197 + L1-Ta germline . yes 633 CCDC67
srip17218 chr11 94684419 94684419 + L1-Ta germline . no 633 .
srip17250 chr11 95175423 95175423 + L1-Ta germline . no 633 .
srip17362 chr11 99478828 99478828 + L1-Ta germline . yes 633 CNTN5
srip21915 chr12 42238062 42238062 - L1-Ta germline . no 633 .
srip22430 chr12 44501995 44501995 - L1-Ta germline . yes 633 TMEM117
srip23385 chr12 70167057 70167057 - L1-Ta germline . no 633 RAB3IP
srip25262 chr12 98672913 98672913 + L1-Ta germline . yes 633 .
srip26385 chr12 126802939 126802939 - L1-Ta germline . no 633 .
srip26713 chr13 21514913 21514913 - L1-Ta germline . no 633 .
srip27560 chr13 33390373 33390373 - L1-Ta germline . no 633 .
srip27566 chr13 33441812 33441812 - L1-Ta germline . no 633 .
srip29418 chr13 61734484 61734484 + L1-Ta germline . no 633 .
srip30514 chr13 77186902 77186902 - L1-Ta germline . no 633 .
srip32030 chr13 86502081 86502081 + L1-Ta germline . no 633 .
srip32194 chr13 88851194 88851194 - L1-Ta germline . no 633 .
srip32429 chr13 92855881 92855881 + L1-Ta germline . yes 633 GPC5
srip33676 chr13 104704163 104704163 + L1-Ta germline . yes 633 .
srip34383 chr14 24582584 24582584 + L1-Ta germline . yes 633 .
srip34593 chr14 26787482 26787482 - L1-Ta germline . no 633 .
srip36320 chr14 39875096 39875096 + L1-Ta germline validated no 633 FBXO33
srip36384 chr14 41197899 41197899 - L1-Ta germline . no 633 .
srip37004 chr14 48662336 48662336 + L1-Ta germline . no 633 .
srip38382 chr14 81477221 81477221 - L1-Ta germline . no 633 TSHR
srip38866 chr14 95605326 95605326 + L1-Ta germline . no 633 DICER1
srip38958 chr15 20022208 20022208 - L1-Ta germline . no 633 .
srip39082 chr15 24383900 24383900 + L1-Ta germline . yes 633 .
srip39851 chr15 38339260 38339260 - L1-Ta germline . no 633 .
srip40755 chr15 51875289 51875289 - L1-Ta germline . no 633 DMXL2
srip40812 chr15 53448042 53448042 - L1-Ta germline . no 633 .
srip41282 chr15 58012013 58012013 - L1-Ta germline . no 633 .
srip41598 chr15 61328970 61328970 - L1-Ta germline . no 633 RORA
srip41780 chr15 71027483 71027483 + L1-Ta germline . yes 633 UACA
srip43453 chr16 5338651 5338651 + L1-Ta germline . no 633 .
srip45807 chr16 61079187 61079187 + L1-Ta germline . no 633 .
srip46566 chr17 9525306 9525306 + L1-Ta germline . yes 633 WDR16
srip47223 chr17 28398312 28398312 + L1-Ta germline . no 633 EFCAB5
srip47406 chr17 29659591 29659591 - L1-Ta germline . no 633 NF1
srip47460 chr17 32192799 32192799 + L1-Ta germline . yes 633 ACCN1
srip48682 chr18 5332408 5332408 - L1-Ta germline . no 633 .
srip49039 chr18 23067399 23067399 + L1-Ta germline . no 633 .
srip49492 chr18 30185593 30185593 - L1-Ta germline . no 633 .
srip49717 chr18 34567457 34567457 + L1-Ta germline . yes 633 KIAA1328
srip49790 chr18 41032554 41032554 + L1-Ta germline . no 633 .
srip50757 chr18 51762741 51762741 - L1-Ta germline . no 633 .
srip50845 chr18 58172211 58172211 - L1-Ta germline . no 633 .
srip51101 chr18 61030433 61030433 - L1-Ta germline . no 633 KDSR
srip51187 chr18 63446487 63446487 - L1-Ta germline . no 633 CDH7
srip51258 chr18 68413712 68413712 - L1-Ta germline . no 633 .
srip51327 chr18 69024727 69024727 + L1-Ta germline . yes 633 .
srip52542 chr2 988745 988745 - L1-Ta germline . no 633 SNTG2
srip53589 chr2 23191016 23191016 - L1-Ta germline . no 633 .
srip56274 chr2 83068216 83068216 + L1-Ta germline . yes 633 .
srip56508 chr2 83188326 83188326 + L1-Ta germline . no 633 .
srip56963 chr2 108631988 108631988 - L1-Ta germline . no 633 .
srip57306 chr2 116246475 116246475 + L1-Ta germline . no 633 DPP10
srip57370 chr2 118667183 118667183 - L1-Ta germline . no 633 .
srip57765 chr2 130439851 130439851 - L1-Ta germline . no 633 .
srip58409 chr2 143799068 143799068 - L1-Ta germline . no 633 KYNU
srip58616 chr2 144624534 144624534 + L1-Ta germline . yes 633 .
srip59434 chr2 153864262 153864262 - L1-Ta germline . no 633 .
srip59809 chr2 170111155 170111155 + L1-Ta germline . yes 633 LRP2
srip61291 chr2 205631655 205631655 - L1-Ta germline . no 633 PARD3B
srip61722 chr2 214647628 214647628 - L1-Ta germline . no 633 SPAG16
srip61791 chr2 218176494 218176494 + L1-Ta germline . yes 633 DIRC3
srip61852 chr2 220684396 220684396 + L1-Ta germline . no 633 .
srip62682 chr2 239902375 239902375 - L1-Ta germline . no 633 .
srip63248 chr20 11619480 11619480 + L1-Ta germline . no 633 .
srip63264 chr20 12781652 12781652 - L1-Ta germline . no 633 .
srip63663 chr20 19400466 19400466 - L1-Ta germline . no 633 SLC24A3
srip63948 chr20 23412776 23412776 + L1-Ta germline . yes 633 .
srip65880 chr21 19517309 19517309 - L1-Ta germline . no 633 .
srip66062 chr21 20381800 20381800 + L1-Ta germline . no 633 .
srip66562 chr21 26825400 26825400 + L1-Ta germline . no 633 .
srip66888 chr21 29069173 29069173 + L1-Ta germline . no 633 .
srip67458 chr22 22486374 22486374 - L1-Ta germline . no 633 IGL@
srip68207 chr22 29065287 29065287 + L1-Ta germline . yes 633 TTC28
srip69721 chr3 2050178 2050178 + L1-Ta germline . yes 633 .
srip70825 chr3 25740941 25740941 - L1-Ta germline . no 633 .
srip71182 chr3 27135216 27135216 + L1-Ta germline . no 633 .
srip71343 chr3 33554072 33554072 + L1-Ta germline . no 633 CLASP2
srip71976 chr3 41821477 41821477 + L1-Ta germline . yes 633 ULK4
srip72087 chr3 46824583 46824583 - L1-Ta germline . no 633 .
srip73331 chr3 59852889 59852889 + L1-Ta germline . no 633 FHIT
srip74970 chr3 83853124 83853124 - L1-Ta germline . no 633 .
srip74982 chr3 84433383 84433383 + L1-Ta germline . no 633 .
srip76366 chr3 103275235 103275235 - L1-Ta germline . no 633 .
srip76455 chr3 105473860 105473860 - L1-Ta germline . no 633 CBLB
srip76553 chr3 108924737 108924737 + L1-Ta germline . yes 633 .
srip76630 chr3 109836400 109836400 - L1-Ta germline . no 633 .
srip76756 chr3 116084880 116084880 + L1-Ta germline . no 633 LSAMP-AS1;LSAMP
srip77091 chr3 123590712 123590712 + L1-Ta germline validated no 633 MYLK
srip77343 chr3 129972765 129972765 + L1-Ta germline . yes 633 COL6A4P2
srip77536 chr3 132525461 132525461 - L1-Ta germline . no 633 NPHP3-AS1
srip77796 chr3 137073450 137073450 + L1-Ta germline . no 633 .
srip78899 chr3 154632590 154632590 + L1-Ta germline . yes 633 .
srip79195 chr3 158813156 158813156 - L1-Ta germline . yes 633 IQCJ;IQCJ-SCHIP1
srip80294 chr3 176091321 176091321 + L1-Ta germline . no 633 .
srip80895 chr3 182952475 182952475 - L1-Ta germline . no 633 MCF2L2
srip81371 chr3 186372123 186372123 + L1-Ta germline . no 633 .
srip81575 chr3 187835306 187835306 - L1-Ta germline . no 633 .
srip81748 chr3 188234419 188234419 + L1-Ta germline validated no 633 LPP
srip82680 chr4 16950725 16950725 + L1-Ta germline . yes 633 .
srip83221 chr4 18194350 18194350 - L1-Ta germline . no 633 .
srip83273 chr4 19170950 19170950 + L1-Ta germline . no 633 .
srip83547 chr4 23622456 23622456 + L1-Ta germline . yes 633 .
srip83579 chr4 26929329 26929329 + L1-Ta germline . no 633 STIM2
srip84923 chr4 48416463 48416463 - L1-Ta germline . no 633 SLAIN2
srip84975 chr4 48738022 48738022 + L1-Ta germline . no 633 FRYL
srip85569 chr4 58428313 58428313 - L1-Ta germline . no 633 .
srip85837 chr4 59442445 59442445 - L1-Ta germline . no 633 .
srip87118 chr4 75642671 75642671 - L1-Ta germline . no 633 .
srip87142 chr4 79032904 79032904 + L1-Ta germline . yes 633 FRAS1
srip87716 chr4 82931377 82931377 + L1-Ta germline . yes 633 .
srip88148 chr4 98103815 98103815 - L1-Ta germline validated no 633 .
srip91877 chr4 133524825 133524825 + L1-Ta germline . no 633 .
srip92282 chr4 136006539 136006539 + L1-Ta germline . no 633 .
srip93144 chr4 147543284 147543284 + L1-Ta germline . no 633 .
srip94120 chr4 167369021 167369021 - L1-Ta germline . no 633 .
srip94436 chr4 170281916 170281916 - L1-Ta germline . no 633 .
srip94490 chr4 170436610 170436610 - L1-Ta germline . no 633 NEK1
srip95081 chr4 182695155 182695155 - L1-Ta germline . no 633 .
srip95720 chr5 7603653 7603653 - L1-Ta germline . no 633 ADCY2
srip98809 chr5 51488295 51488295 - L1-Ta germline . no 633 .
srip99084 chr5 57279515 57279515 + L1-Ta germline validated no 633 .
srip99138 chr5 57686046 57686046 + L1-Ta germline . no 633 .
srip99322 chr5 67585344 67585344 - L1-Ta germline . no 633 PIK3R1
srip101415 chr5 99981611 99981611 + L1-Ta germline . yes 633 .
srip102556 chr5 110474800 110474800 + L1-Ta germline . yes 633 .
srip102609 chr5 110643939 110643939 + L1-Ta germline . yes 633 CAMK4
srip102798 chr5 118941211 118941211 + L1-Ta germline . no 633 .
srip103001 chr5 124907258 124907258 + L1-Ta germline . yes 633 .
srip103904 chr5 138420464 138420464 + L1-Ta germline . yes 633 SIL1
srip104236 chr5 144473640 144473640 + L1-Ta germline . no 633 .
srip104336 chr5 147337963 147337963 - L1-Ta germline . no 633 .
srip104902 chr5 155488954 155488954 - L1-Ta germline . yes 633 .
srip105125 chr5 155619862 155619862 + L1-Ta germline . no 633 .
srip105520 chr5 159351193 159351193 - L1-Ta germline . no 633 ADRA1B
srip105853 chr5 165848548 165848548 + L1-Ta germline . yes 633 .
srip106029 chr5 172829796 172829796 - L1-Ta germline . no 633 .
srip106105 chr5 177205284 177205284 + L1-Ta germline . no 633 FAM153A
srip106601 chr6 2418002 2418002 - L1-Ta germline . no 633 .
srip107661 chr6 18910854 18910854 - L1-Ta germline . no 633 .
srip108183 chr6 39645329 39645329 - L1-Ta germline . yes 633 KIF6
srip108767 chr6 50611605 50611605 - L1-Ta germline . no 633 .
srip108848 chr6 55594843 55594843 - L1-Ta germline . no 633 .
srip109824 chr6 66787597 66787597 - L1-Ta germline . no 633 .
srip111349 chr6 84049691 84049691 + L1-Ta germline . yes 633 ME1
srip111995 chr6 91669505 91669505 - L1-Ta germline . no 633 .
srip112359 chr6 94575457 94575457 - L1-Ta germline . no 633 .
srip112402 chr6 99988745 99988745 - L1-Ta germline . no 633 .
srip112900 chr6 113030984 113030984 + L1-Ta germline . no 633 LOC100287612
srip113078 chr6 115899917 115899917 - L1-Ta germline . no 633 .
srip113399 chr6 125643206 125643206 + L1-Ta germline . yes 633 .
srip113513 chr6 133341827 133341827 - L1-Ta germline . no 633 .
srip113555 chr6 136712687 136712687 + L1-Ta germline . yes 633 MAP7
srip113823 chr6 142450109 142450109 - L1-Ta germline . no 633 .
srip114813 chr6 149477041 149477041 + L1-Ta germline validated no 633 .
srip114827 chr6 153029982 153029982 - L1-Ta germline . no 633 MYCT1
srip114926 chr6 156361300 156361300 + L1-Ta germline . no 633 .
srip114957 chr6 157400162 157400162 + L1-Ta germline . no 633 ARID1B
srip115424 chr6 162181256 162181256 + L1-Ta germline . no 633 PARK2
srip116515 chr7 25081462 25081462 - L1-Ta germline . no 633 .
srip116636 chr7 28783416 28783416 - L1-Ta germline . no 633 CREB5
srip116700 chr7 30484894 30484894 + L1-Ta germline . no 633 NOD1
srip117091 chr7 45733735 45733735 + L1-Ta germline . no 633 ADCY1
srip118546 chr7 69668336 69668336 + L1-Ta germline . yes 633 AUTS2
srip118604 chr7 69828469 69828469 + L1-Ta germline . no 633 AUTS2
srip121425 chr7 107829247 107829247 + L1-Ta germline . no 633 NRCAM
srip122051 chr7 109548699 109548699 + L1-Ta germline . no 633 .
srip122471 chr7 113139394 113139394 + L1-Ta germline . yes 633 .
srip122987 chr7 129507566 129507566 + L1-Ta germline . no 633 UBE2H
srip123045 chr7 130386823 130386823 - L1-Ta germline . no 633 .
srip123435 chr7 145063368 145063368 + L1-Ta germline . yes 633 .
srip124763 chr8 9597567 9597567 + L1-Ta germline . yes 633 TNKS
srip124984 chr8 18768149 18768149 + L1-Ta germline . yes 633 PSD3
srip125627 chr8 28977684 28977684 - L1-Ta germline . no 633 KIF13B
srip126389 chr8 58347939 58347939 + L1-Ta germline . no 633 .
srip126463 chr8 62681670 62681670 + L1-Ta germline . no 633 .
srip126965 chr8 71583563 71583563 - L1-Ta germline . no 633 XKR9
srip128487 chr8 97911008 97911008 + L1-Ta germline . yes 633 PGCP
srip128642 chr8 100233000 100233000 - L1-Ta germline . no 633 VPS13B
srip128900 chr8 114072203 114072203 - L1-Ta germline . no 633 CSMD3
srip129967 chr8 129465157 129465157 - L1-Ta germline . no 633 .
srip130494 chr9 1337904 1337904 - L1-Ta germline . no 633 .
srip131607 chr9 10137698 10137698 + L1-Ta germline . yes 633 PTPRD
srip131880 chr9 28111894 28111894 - L1-Ta germline . yes 633 LINGO2
srip132104 chr9 29260389 29260389 + L1-Ta germline . no 633 .
srip133184 chr9 32463884 32463884 - L1-Ta germline . no 633 DDX58
srip133600 chr9 32757349 32757349 + L1-Ta germline . no 633 .
srip134090 chr9 80014129 80014129 + L1-Ta germline . no 633 VPS13A
srip134241 chr9 82866814 82866814 + L1-Ta germline . no 633 .
srip134273 chr9 86065262 86065262 - L1-Ta germline . no 633 FRMD3
srip134557 chr9 98465870 98465870 + L1-Ta germline . yes 633 .
srip134719 chr9 102615582 102615582 - L1-Ta germline . no 633 NR4A3
srip134780 chr9 103749297 103749297 + L1-Ta germline . no 633 .
srip134824 chr9 104443975 104443975 - L1-Ta germline . no 633 GRIN3A
srip136146 chr9 135312009 135312009 + L1-Ta germline . no 633 C9orf171
srip136947 chrX 45449426 45449426 + L1-Ta germline . no 633 .
srip138721 chrX 75543182 75543182 - L1-Ta germline . no 633 .
srip139012 chrX 75949601 75949601 + L1-Ta germline . no 633 .
srip139075 chrX 76425435 76425435 - L1-Ta germline . no 633 .
srip139145 chrX 81102668 81102668 + L1-Ta germline . yes 633 .
srip139280 chrX 84028703 84028703 - L1-Ta germline . no 633 .
srip139322 chrX 85609830 85609830 + L1-Ta germline . yes 633 DACH2
srip139445 chrX 85781783 85781783 + L1-Ta germline . no 633 DACH2
srip139499 chrX 94857127 94857127 + L1-Ta germline . yes 633 .
srip140548 chrX 117098155 117098155 + L1-Ta germline . yes 633 KLHL13
srip140825 chrX 120397638 120397638 - L1-Ta germline . no 633 .
srip141418 chrX 130140534 130140534 + L1-Ta germline . no 633 .
srip141495 chrX 134162047 134162047 + L1-Ta germline . no 633 .
srip141595 chrX 137146500 137146500 + L1-Ta germline . no 633 .
srip141981 chrX 141571641 141571641 + L1-Ta germline . yes 633 .
srip142103 chrX 154745667 154745667 - L1-Ta germline . no 633 TMLHE