euL1db
The European database of L1-HS retrotransposon insertions in humans

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   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

47 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip2363 chr1 90914497 90914497 + unknown germline . no 2 .
srip5066 chr1 169524869 169524869 + unknown germline validated no 2 F5
srip15327 chr11 58171837 58171837 + unknown germline . no 2 .
srip18456 chr11 123241788 123241788 + unknown germline . no 2 .
srip18958 chr11 134305630 134305630 - unknown germline validated no 2 .
srip19856 chr12 11219180 11219180 - unknown germline . no 2 PRH1-PRR4
srip24336 chr12 84955192 84955192 - unknown germline . no 2 .
srip25175 chr12 97365529 97365529 - unknown germline . no 2 .
srip29453 chr13 61734484 61734484 . unknown germline validated no 2 .
srip31958 chr13 86340149 86340149 - unknown germline validated no 2 .
srip35827 chr14 36674743 36674743 + unknown germline . no 2 .
srip39456 chr15 34031838 34031838 - unknown germline validated no 2 RYR3
srip42490 chr15 83551623 83551623 - unknown germline validated no 2 HOMER2
srip48315 chr17 68357398 68357398 + unknown germline validated no 2 .
srip49381 chr18 28732901 28732901 - unknown germline validated no 2 DSC1
srip52796 chr2 7050602 7050602 + unknown germline . no 2 .
srip53371 chr2 23190999 23190999 - unknown germline . no 2 .
srip53891 chr2 35879337 35879337 + unknown germline . no 2 .
srip58976 chr2 147020924 147020924 + unknown germline validated no 2 .
srip61620 chr2 212707185 212707185 . unknown germline . no 2 ERBB4
srip62335 chr2 230341550 230341550 + unknown germline validated no 2 DNER
srip64430 chr20 29638569 29638569 . unknown germline validated no 2 .
srip68719 chr22 44324589 44324589 - unknown germline . no 2 PNPLA3
srip71040 chr3 26524446 26524446 - unknown germline . no 2 .
srip72586 chr3 55788565 55788565 + unknown germline . no 2 ERC2
srip73216 chr3 59852887 59852887 + unknown germline . no 2 FHIT
srip74809 chr3 82144851 82144851 - unknown germline . no 2 .
srip75016 chr3 84433383 84433383 + unknown germline . no 2 .
srip82049 chr3 193354159 193354159 - unknown germline . no 2 OPA1
srip82379 chr4 10632678 10632678 - unknown germline . no 2 CLNK
srip87012 chr4 71093302 71093302 . unknown germline . no 2 C4orf7
srip87871 chr4 86607949 86607949 + unknown germline . no 2 ARHGAP24
srip92599 chr4 138177324 138177324 + unknown germline validated no 2 .
srip95300 chr4 190659694 190659694 . unknown germline . no 2 .
srip97641 chr5 33633332 33633332 . unknown germline validated no 2 ADAMTS12
srip100442 chr5 89450768 89450768 + unknown germline validated no 2 .
srip101621 chr5 105935355 105935355 + unknown germline . no 2 .
srip108320 chr6 45852710 45852710 - unknown germline . no 2 .
srip111151 chr6 77980671 77980671 - unknown germline validated no 2 .
srip114361 chr6 148163569 148163569 + unknown germline validated no 2 .
srip114977 chr6 157968609 157968609 . unknown germline validated no 2 ZDHHC14
srip115497 chr6 162181256 162181256 + unknown germline . no 2 PARK2
srip119927 chr7 84901725 84901725 - unknown germline validated no 2 .
srip120105 chr7 85044736 85044736 . unknown germline validated no 2 .
srip122132 chr7 110484748 110484748 + unknown germline . no 2 IMMP2L
srip133511 chr9 32463896 32463896 - unknown germline validated no 2 DDX58
srip139719 chrX 98264288 98264288 . unknown germline . no 2 .