euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

225 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip200 chr1 31041664 31041664 + L1-Ta germline . no 689 .
srip925 chr1 56834937 56834937 + L1-Ta germline . yes 689 .
srip1665 chr1 74984526 74984526 - L1-Ta germline . no 689 FPGT-TNNI3K;TNNI3K
srip1686 chr1 75192713 75192713 - L1-Ta germline . no 689 CRYZ
srip2172 chr1 86398798 86398798 + L1-Ta germline . no 689 COL24A1
srip2200 chr1 86741680 86741680 + L1-Ta germline . yes 689 .
srip2260 chr1 87144762 87144762 - L1-Ta germline . no 689 .
srip3265 chr1 105386449 105386449 - L1-Ta germline . no 689 .
srip3993 chr1 121478354 121478354 + L1-Ta germline . yes 689 .
srip4204 chr1 152462236 152462236 - L1-Ta germline . no 689 .
srip4309 chr1 158238664 158238664 + L1-Ta germline . yes 689 .
srip4582 chr1 163231881 163231881 - L1-Ta germline . no 689 LOC100505773
srip4812 chr1 165940104 165940104 - L1-Ta germline . yes 689 .
srip4850 chr1 166212290 166212290 - L1-Ta germline . yes 689 .
srip5524 chr1 180668321 180668321 - L1-Ta germline . no 689 XPR1
srip5840 chr1 192072266 192072266 - L1-Ta germline . no 689 .
srip6155 chr1 193836827 193836827 + L1-Ta germline . yes 689 .
srip7063 chr1 228058514 228058514 - L1-Ta germline . yes 689 .
srip7931 chr10 19216651 19216651 + L1-Ta germline . no 689 .
srip8731 chr10 32929792 32929792 - L1-Ta germline . no 689 C10orf68
srip8991 chr10 58863547 58863547 - L1-Ta germline . no 689 .
srip10799 chr10 107137008 107137008 - L1-Ta germline . no 689 .
srip11309 chr10 110846814 110846814 + L1-Ta germline . yes 689 .
srip11964 chr10 131468408 131468408 - L1-Ta germline . no 689 MGMT
srip12534 chr11 15380245 15380245 + L1-Ta germline . no 689 .
srip12718 chr11 24355519 24355519 + L1-Ta germline . yes 689 .
srip14846 chr11 48755930 48755930 + L1-Ta germline . no 689 .
srip15539 chr11 59815986 59815986 - L1-Ta germline . no 689 .
srip16760 chr11 85211733 85211733 + L1-Ta germline . no 689 DLG2
srip17236 chr11 94684419 94684419 + L1-Ta germline . no 689 .
srip17417 chr11 99478828 99478828 + L1-Ta germline . yes 689 CNTN5
srip17845 chr11 109048060 109048060 - L1-Ta germline . no 689 .
srip22481 chr12 44501995 44501995 - L1-Ta germline . yes 689 TMEM117
srip23431 chr12 70167057 70167057 - L1-Ta germline . no 689 RAB3IP
srip24068 chr12 79570815 79570815 - L1-Ta germline . no 689 SYT1
srip27539 chr13 30215833 30215833 - L1-Ta germline . no 689 .
srip27620 chr13 33441812 33441812 - L1-Ta germline . no 689 .
srip28493 chr13 59088395 59088395 + L1-Ta germline . no 689 .
srip28708 chr13 61462318 61462318 - L1-Ta germline . no 689 .
srip32249 chr13 88851194 88851194 - L1-Ta germline . no 689 .
srip32477 chr13 92855881 92855881 + L1-Ta germline . yes 689 GPC5
srip33707 chr13 104704163 104704163 + L1-Ta germline . yes 689 .
srip34341 chr14 20554442 20554442 - L1-Ta germline . no 689 .
srip35376 chr14 30854669 30854669 + L1-Ta germline . no 689 .
srip37038 chr14 48662336 48662336 + L1-Ta germline . no 689 .
srip38026 chr14 71020049 71020049 + L1-Ta germline . no 689 .
srip38912 chr14 95605326 95605326 + L1-Ta germline . no 689 DICER1
srip38991 chr15 20022208 20022208 - L1-Ta germline . no 689 .
srip39015 chr15 20116657 20116657 + L1-Ta germline . no 689 .
srip40803 chr15 51875289 51875289 - L1-Ta germline . no 689 DMXL2
srip40864 chr15 53448042 53448042 - L1-Ta germline . no 689 .
srip41819 chr15 71027483 71027483 + L1-Ta germline . yes 689 UACA
srip42302 chr15 83551535 83551535 - L1-Ta germline . no 689 HOMER2
srip43868 chr16 7925421 7925421 + L1-Ta germline . no 689 .
srip44182 chr16 18832538 18832538 - L1-Ta germline . no 689 SMG1
srip46584 chr17 9525306 9525306 + L1-Ta germline . yes 689 WDR16
srip47442 chr17 29659591 29659591 - L1-Ta germline . no 689 NF1
srip48735 chr18 5332408 5332408 - L1-Ta germline . no 689 .
srip49058 chr18 23067399 23067399 + L1-Ta germline . no 689 .
srip49544 chr18 30185593 30185593 - L1-Ta germline . no 689 .
srip49746 chr18 34567457 34567457 + L1-Ta germline . yes 689 KIAA1328
srip51068 chr18 59763726 59763726 - L1-Ta germline . no 689 PIGN
srip51152 chr18 61030433 61030433 - L1-Ta germline . no 689 KDSR
srip51235 chr18 63446487 63446487 - L1-Ta germline . no 689 CDH7
srip51307 chr18 68413712 68413712 - L1-Ta germline . no 689 .
srip51383 chr18 69024727 69024727 + L1-Ta germline . yes 689 .
srip52520 chr19 55091547 55091547 - L1-Ta germline . no 689 LILRA2
srip54392 chr2 41777137 41777137 - L1-Ta germline . no 689 .
srip55657 chr2 73354355 73354355 - L1-Ta germline . no 689 .
srip55971 chr2 81834768 81834768 - L1-Ta germline . no 689 .
srip57017 chr2 108631988 108631988 - L1-Ta germline . no 689 .
srip57420 chr2 118667183 118667183 - L1-Ta germline . no 689 .
srip57629 chr2 126510571 126510571 + L1-Ta germline . yes 689 .
srip58379 chr2 142788891 142788891 - L1-Ta germline . no 689 LRP1B
srip59482 chr2 153864262 153864262 - L1-Ta germline . no 689 .
srip59948 chr2 176346680 176346680 - L1-Ta germline . no 689 .
srip60779 chr2 191478703 191478703 - L1-Ta germline . no 689 .
srip61342 chr2 205631655 205631655 - L1-Ta germline . no 689 PARD3B
srip61776 chr2 214647628 214647628 - L1-Ta germline . no 689 SPAG16
srip61842 chr2 218176494 218176494 + L1-Ta germline . yes 689 DIRC3
srip62714 chr2 239902375 239902375 - L1-Ta germline . no 689 .
srip63313 chr20 12781652 12781652 - L1-Ta germline . no 689 .
srip63997 chr20 23412776 23412776 + L1-Ta germline . yes 689 .
srip65635 chr21 19082350 19082350 - L1-Ta germline . no 689 .
srip65903 chr21 19517309 19517309 - L1-Ta germline . no 689 .
srip66544 chr21 24125137 24125137 + L1-Ta germline . yes 689 .
srip66574 chr21 26825400 26825400 + L1-Ta germline . no 689 .
srip66908 chr21 29069173 29069173 + L1-Ta germline . no 689 .
srip67752 chr22 22715585 22715585 + L1-Ta germline . no 689 IGL@
srip68257 chr22 29065287 29065287 + L1-Ta germline . yes 689 TTC28
srip69706 chr3 656444 656444 - L1-Ta germline validated no 689 .
srip69771 chr3 2050178 2050178 + L1-Ta germline . yes 689 .
srip69883 chr3 4080917 4080917 - L1-Ta germline . yes 689 .
srip70865 chr3 25740941 25740941 - L1-Ta germline . no 689 .
srip70924 chr3 26439488 26439488 - L1-Ta germline . no 689 .
srip71208 chr3 27135216 27135216 + L1-Ta germline . no 689 .
srip71383 chr3 33554072 33554072 + L1-Ta germline . no 689 CLASP2
srip71416 chr3 34694359 34694359 - L1-Ta germline . yes 689 .
srip72004 chr3 41821477 41821477 + L1-Ta germline . yes 689 ULK4
srip72138 chr3 46824583 46824583 - L1-Ta germline . no 689 .
srip73575 chr3 75005137 75005137 + L1-Ta germline . no 689 .
srip74624 chr3 81770349 81770349 + L1-Ta germline . yes 689 GBE1
srip75956 chr3 90389460 90389460 + L1-Ta germline . no 689 .
srip76511 chr3 105473860 105473860 - L1-Ta germline . no 689 CBLB
srip76596 chr3 108924737 108924737 + L1-Ta germline . yes 689 .
srip76680 chr3 109836400 109836400 - L1-Ta germline . no 689 .
srip76792 chr3 116084880 116084880 + L1-Ta germline . no 689 LSAMP-AS1;LSAMP
srip76841 chr3 119581390 119581390 + L1-Ta germline . no 689 GSK3B
srip77399 chr3 129972765 129972765 + L1-Ta germline . yes 689 COL6A4P2
srip77443 chr3 130352893 130352893 + L1-Ta germline . yes 689 COL6A6
srip77595 chr3 132664831 132664831 - L1-Ta germline . no 689 .
srip77837 chr3 137073450 137073450 + L1-Ta germline . no 689 .
srip78946 chr3 154632590 154632590 + L1-Ta germline . yes 689 .
srip79246 chr3 158813156 158813156 - L1-Ta germline . yes 689 IQCJ;IQCJ-SCHIP1
srip79965 chr3 172749131 172749131 - L1-Ta germline . no 689 SPATA16
srip80214 chr3 175677955 175677955 - L1-Ta germline . no 689 .
srip82344 chr4 7995690 7995690 - L1-Ta germline . no 689 ABLIM2
srip82648 chr4 15849204 15849204 + L1-Ta germline . no 689 CD38
srip83317 chr4 19170950 19170950 + L1-Ta germline . no 689 .
srip83375 chr4 21167096 21167096 + L1-Ta germline . no 689 KCNIP4
srip83629 chr4 26929329 26929329 + L1-Ta germline . no 689 STIM2
srip84629 chr4 46883027 46883027 + L1-Ta germline . no 689 .
srip84681 chr4 47007779 47007779 - L1-Ta germline . no 689 .
srip85029 chr4 48738022 48738022 + L1-Ta germline . no 689 FRYL
srip85059 chr4 49057917 49057917 - L1-Ta germline . no 689 CWH43
srip85885 chr4 59442445 59442445 - L1-Ta germline . no 689 .
srip86335 chr4 66809073 66809073 - L1-Ta germline . no 689 .
srip87036 chr4 71093305 71093305 + L1-Ta germline . no 689 C4orf7
srip87087 chr4 71200089 71200089 + L1-Ta germline . no 689 .
srip87128 chr4 75642671 75642671 - L1-Ta germline . no 689 .
srip87193 chr4 79032904 79032904 + L1-Ta germline . yes 689 FRAS1
srip87448 chr4 80864880 80864880 + L1-Ta germline . yes 689 ANTXR2
srip88078 chr4 88486275 88486275 + L1-Ta germline . yes 689 .
srip88369 chr4 99513572 99513572 - L1-Ta germline . no 689 TSPAN5
srip90331 chr4 115132696 115132696 + L1-Ta germline . no 689 .
srip90853 chr4 120869874 120869874 - L1-Ta germline . no 689 .
srip92334 chr4 136006539 136006539 + L1-Ta germline . no 689 .
srip93189 chr4 147543284 147543284 + L1-Ta germline . no 689 .
srip94167 chr4 167369021 167369021 - L1-Ta germline . no 689 .
srip94480 chr4 170281916 170281916 - L1-Ta germline . no 689 .
srip94544 chr4 170436610 170436610 - L1-Ta germline . no 689 NEK1
srip95131 chr4 182695155 182695155 - L1-Ta germline . no 689 .
srip96420 chr5 12197468 12197468 - L1-Ta germline . yes 689 .
srip97802 chr5 33633345 33633345 - L1-Ta germline . no 689 ADAMTS12
srip98151 chr5 34153955 34153955 + L1-Ta germline . yes 689 .
srip98856 chr5 51488295 51488295 - L1-Ta germline . no 689 .
srip101468 chr5 99981611 99981611 + L1-Ta germline . yes 689 .
srip101543 chr5 105483500 105483500 - L1-Ta germline . no 689 .
srip101731 chr5 108601132 108601132 + L1-Ta germline . no 689 .
srip102603 chr5 110474800 110474800 + L1-Ta germline . yes 689 .
srip103295 chr5 125040040 125040040 + L1-Ta germline . no 689 .
srip103959 chr5 138420464 138420464 + L1-Ta germline . yes 689 SIL1
srip104282 chr5 144473640 144473640 + L1-Ta germline . no 689 .
srip104376 chr5 147337963 147337963 - L1-Ta germline . no 689 .
srip104943 chr5 155488954 155488954 - L1-Ta germline . yes 689 .
srip105561 chr5 159351193 159351193 - L1-Ta germline . no 689 ADRA1B
srip105898 chr5 165848548 165848548 + L1-Ta germline . yes 689 .
srip106082 chr5 172829796 172829796 - L1-Ta germline . no 689 .
srip106645 chr6 2418002 2418002 - L1-Ta germline . no 689 .
srip107713 chr6 18910854 18910854 - L1-Ta germline . no 689 .
srip108233 chr6 39645329 39645329 - L1-Ta germline . yes 689 KIF6
srip108795 chr6 50611605 50611605 - L1-Ta germline . no 689 .
srip109437 chr6 63368195 63368195 + L1-Ta germline . no 689 .
srip109869 chr6 66787597 66787597 - L1-Ta germline . no 689 .
srip109904 chr6 67313668 67313668 + L1-Ta germline . yes 689 .
srip110161 chr6 70726265 70726265 + L1-Ta germline . yes 689 COL19A1
srip110391 chr6 73995229 73995229 - L1-Ta germline . no 689 C6orf147
srip111380 chr6 84049691 84049691 + L1-Ta germline . yes 689 ME1
srip112036 chr6 91669505 91669505 - L1-Ta germline . no 689 .
srip112955 chr6 113030984 113030984 + L1-Ta germline . no 689 LOC100287612
srip113611 chr6 136712687 136712687 + L1-Ta germline . yes 689 MAP7
srip113855 chr6 142450109 142450109 - L1-Ta germline . no 689 .
srip114848 chr6 153029982 153029982 - L1-Ta germline . no 689 MYCT1
srip116563 chr7 25081462 25081462 - L1-Ta germline . no 689 .
srip116681 chr7 28783416 28783416 - L1-Ta germline . no 689 CREB5
srip116749 chr7 30484894 30484894 + L1-Ta germline . no 689 NOD1
srip117153 chr7 46350337 46350337 - L1-Ta germline . no 689 .
srip118595 chr7 69668336 69668336 + L1-Ta germline . yes 689 AUTS2
srip118649 chr7 69828469 69828469 + L1-Ta germline . no 689 AUTS2
srip121466 chr7 107829247 107829247 + L1-Ta germline . no 689 NRCAM
srip122104 chr7 109548699 109548699 + L1-Ta germline . no 689 .
srip122352 chr7 111609264 111609264 + L1-Ta germline . yes 689 DOCK4
srip122515 chr7 113139394 113139394 + L1-Ta germline . yes 689 .
srip123095 chr7 130386823 130386823 - L1-Ta germline . no 689 .
srip123225 chr7 141620449 141620449 - L1-Ta germline . no 689 .
srip123482 chr7 145063368 145063368 + L1-Ta germline . yes 689 .
srip123710 chr7 154155053 154155053 + L1-Ta germline . yes 689 DPP6
srip124366 chr8 5829277 5829277 - L1-Ta germline . no 689 .
srip124818 chr8 9597567 9597567 + L1-Ta germline . yes 689 TNKS
srip125034 chr8 18768149 18768149 + L1-Ta germline . yes 689 PSD3
srip128536 chr8 97911008 97911008 + L1-Ta germline . yes 689 PGCP
srip128688 chr8 100233000 100233000 - L1-Ta germline . no 689 VPS13B
srip128956 chr8 114072203 114072203 - L1-Ta germline . no 689 CSMD3
srip130437 chr8 137450317 137450317 - L1-Ta germline . yes 689 .
srip130526 chr9 1337904 1337904 - L1-Ta germline . no 689 .
srip131110 chr9 6290488 6290488 + L1-Ta germline . no 689 .
srip131652 chr9 10137698 10137698 + L1-Ta germline . yes 689 PTPRD
srip131923 chr9 28111894 28111894 - L1-Ta germline . yes 689 LINGO2
srip134144 chr9 80014129 80014129 + L1-Ta germline . no 689 VPS13A
srip134319 chr9 86065262 86065262 - L1-Ta germline . no 689 FRMD3
srip134393 chr9 92917935 92917935 + L1-Ta germline . yes 689 .
srip134612 chr9 98465870 98465870 + L1-Ta germline . yes 689 .
srip134766 chr9 102615582 102615582 - L1-Ta germline . no 689 NR4A3
srip134821 chr9 103749297 103749297 + L1-Ta germline . no 689 .
srip135232 chr9 106501597 106501597 - L1-Ta germline . no 689 .
srip135674 chr9 115560387 115560387 - L1-Ta germline . no 689 SNX30
srip136363 chrX 11731399 11731399 + L1-Ta germline . yes 689 .
srip136981 chrX 45449426 45449426 + L1-Ta germline . no 689 .
srip137032 chrX 49731196 49731196 - L1-Ta germline . no 689 CLCN5
srip137068 chrX 49784005 49784005 - L1-Ta germline . no 689 CLCN5
srip137561 chrX 55585146 55585146 - L1-Ta germline . no 689 .
srip138016 chrX 63233094 63233094 - L1-Ta germline . no 689 .
srip138298 chrX 64430988 64430988 + L1-Ta germline . no 689 .
srip138384 chrX 67263241 67263241 + L1-Ta germline . no 689 OPHN1
srip138505 chrX 72606851 72606851 + L1-Ta germline . no 689 .
srip138771 chrX 75543182 75543182 - L1-Ta germline . no 689 .
srip139056 chrX 75949601 75949601 + L1-Ta germline . no 689 .
srip139299 chrX 84028703 84028703 - L1-Ta germline . no 689 .
srip139541 chrX 94857127 94857127 + L1-Ta germline . yes 689 .
srip140572 chrX 117098155 117098155 + L1-Ta germline . yes 689 KLHL13
srip140643 chrX 118569413 118569413 - L1-Ta germline . no 689 SLC25A43
srip141048 chrX 122664652 122664652 - L1-Ta germline . no 689 .
srip141459 chrX 130140534 130140534 + L1-Ta germline . no 689 .
srip141645 chrX 137146500 137146500 + L1-Ta germline . no 689 .
srip142156 chrX 154745667 154745667 - L1-Ta germline . no 689 TMLHE