euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

58 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip3165 chr1 105028216 105028216 + unknown germline . no 28 .
srip3296 chr1 105857781 105857781 - unknown germline . no 28 .
srip3847 chr1 119553348 119553348 + unknown germline validated no 28 .
srip5068 chr1 169524869 169524869 + unknown germline validated no 28 F5
srip10562 chr10 91717633 91717633 - unknown germline . no 28 .
srip14189 chr11 41831797 41831797 . unknown germline validated no 28 .
srip14998 chr11 50399966 50399966 . unknown germline . no 28 .
srip17455 chr11 99502903 99502903 + unknown germline validated no 28 CNTN5
srip18380 chr11 122300403 122300403 - unknown germline . no 28 .
srip18966 chr11 134305630 134305630 - unknown germline validated no 28 .
srip24819 chr12 85506275 85506275 + unknown germline . no 28 LRRIQ1
srip27290 chr13 27488105 27488105 + unknown germline . no 28 .
srip28259 chr13 49957889 49957889 + unknown germline . no 28 CAB39L
srip28963 chr13 61462331 61462331 - unknown germline validated no 28 .
srip31528 chr13 85871603 85871603 - unknown germline . no 28 .
srip31960 chr13 86340149 86340149 - unknown germline validated no 28 .
srip32357 chr13 91626218 91626218 + unknown germline validated no 28 .
srip35834 chr14 36674743 36674743 + unknown germline . no 28 .
srip40140 chr15 47507328 47507328 - unknown germline validated no 28 SEMA6D
srip48316 chr17 68357398 68357398 + unknown germline validated no 28 .
srip53376 chr2 23190999 23190999 - unknown germline . no 28 .
srip56435 chr2 83188324 83188324 . unknown germline validated no 28 .
srip58985 chr2 147020924 147020924 + unknown germline validated no 28 .
srip60067 chr2 178676244 178676244 - unknown germline validated no 28 PDE11A
srip62337 chr2 230341550 230341550 + unknown germline validated no 28 DNER
srip64439 chr20 29638569 29638569 . unknown germline validated no 28 .
srip64840 chr20 41952105 41952105 - unknown germline . no 28 .
srip65188 chr20 53076373 53076373 + unknown germline . no 28 .
srip67399 chr22 22486366 22486366 - unknown germline validated no 28 IGL@
srip68723 chr22 44324589 44324589 - unknown germline . no 28 PNPLA3
srip72591 chr3 55788565 55788565 + unknown germline . no 28 ERC2
srip73221 chr3 59852887 59852887 + unknown germline . no 28 FHIT
srip73862 chr3 75101220 75101220 + unknown germline . no 28 .
srip82054 chr3 193354159 193354159 - unknown germline . no 28 OPA1
srip82738 chr4 17456497 17456497 - unknown germline . no 28 .
srip92132 chr4 134596419 134596419 + unknown germline . no 28 .
srip92606 chr4 138177324 138177324 + unknown germline validated no 28 .
srip95904 chr5 8749509 8749509 . unknown germline . no 28 .
srip96135 chr5 10144617 10144617 + unknown germline . no 28 .
srip97650 chr5 33633332 33633332 . unknown germline validated no 28 ADAMTS12
srip98266 chr5 40041333 40041333 - unknown germline . no 28 .
srip100451 chr5 89450768 89450768 + unknown germline validated no 28 .
srip109447 chr6 63368195 63368195 + unknown germline validated no 28 .
srip111157 chr6 77980671 77980671 - unknown germline validated no 28 .
srip113325 chr6 123853935 123853935 - unknown germline validated no 28 TRDN
srip119934 chr7 84901725 84901725 - unknown germline validated no 28 .
srip121516 chr7 107829248 107829248 + unknown germline validated no 28 NRCAM
srip122140 chr7 110484748 110484748 + unknown germline . no 28 IMMP2L
srip122572 chr7 119446559 119446559 - unknown germline . no 28 .
srip125553 chr8 24926557 24926557 - unknown germline validated no 28 .
srip129365 chr8 115881769 115881769 + unknown germline . no 28 .
srip129585 chr8 119721688 119721688 . unknown germline . no 28 SAMD12-AS1
srip129717 chr8 123098838 123098838 + unknown germline . no 28 .
srip133514 chr9 32463896 32463896 - unknown germline validated no 28 DDX58
srip133991 chr9 73252846 73252846 + unknown germline . no 28 TRPM3
srip136556 chrX 14434992 14434992 + unknown germline . no 28 .
srip140058 chrX 102363173 102363173 . unknown germline validated no 28 .
srip140285 chrX 111229553 111229553 - unknown germline . no 28 TRPC5