euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

43 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip4622 chr1 164239550 164239550 + unknown germline . no 149 .
srip5093 chr1 169524869 169524869 + unknown germline validated no 149 F5
srip14171 chr11 41831797 41831797 . unknown germline validated no 149 .
srip19062 chr11 134305630 134305630 - unknown germline validated no 149 .
srip21960 chr12 43125264 43125264 - unknown germline . no 149 .
srip26024 chr12 118186926 118186926 + unknown germline . no 149 KSR2
srip26329 chr12 126802928 126802928 - unknown germline . no 149 .
srip28322 chr13 55238017 55238017 + unknown germline . no 149 .
srip28938 chr13 61462331 61462331 - unknown germline validated no 149 .
srip29509 chr13 61734484 61734484 . unknown germline validated no 149 .
srip30577 chr13 78055082 78055082 + unknown germline validated no 149 .
srip31497 chr13 85871603 85871603 - unknown germline . no 149 .
srip35775 chr14 36674743 36674743 + unknown germline . no 149 .
srip37932 chr14 68784228 68784228 + unknown germline validated no 149 RAD51B
srip39491 chr15 34031838 34031838 - unknown germline validated no 149 RYR3
srip40178 chr15 47507328 47507328 - unknown germline validated no 149 SEMA6D
srip40938 chr15 53956103 53956103 . unknown germline validated no 149 WDR72
srip53908 chr2 35879337 35879337 + unknown germline . no 149 .
srip56453 chr2 83188324 83188324 . unknown germline validated no 149 .
srip58964 chr2 147020924 147020924 + unknown germline validated no 149 .
srip64418 chr20 29638569 29638569 . unknown germline validated no 149 .
srip64808 chr20 41952105 41952105 - unknown germline . no 149 .
srip67390 chr22 22486366 22486366 - unknown germline validated no 149 IGL@
srip73303 chr3 59852887 59852887 + unknown germline . no 149 FHIT
srip74822 chr3 82144851 82144851 - unknown germline . no 149 .
srip75663 chr3 85663351 85663351 - unknown germline . no 149 CADM2
srip82088 chr3 193354159 193354159 - unknown germline . no 149 OPA1
srip90614 chr4 118332397 118332397 . unknown germline . no 149 .
srip95285 chr4 190659694 190659694 . unknown germline . no 149 .
srip97619 chr5 33633332 33633332 . unknown germline validated no 149 ADAMTS12
srip100503 chr5 89450768 89450768 + unknown germline validated no 149 .
srip108930 chr6 56729290 56729290 - unknown germline . no 149 LOC100652827
srip110063 chr6 69198728 69198728 . unknown germline validated no 149 .
srip115462 chr6 162181256 162181256 + unknown germline . no 149 PARK2
srip120090 chr7 85044736 85044736 . unknown germline validated no 149 .
srip121480 chr7 107829248 107829248 + unknown germline validated no 149 NRCAM
srip122175 chr7 110484748 110484748 + unknown germline . no 149 IMMP2L
srip125538 chr8 24926557 24926557 - unknown germline validated no 149 .
srip127413 chr8 72399225 72399225 - unknown germline . no 149 .
srip129388 chr8 115881769 115881769 + unknown germline . no 149 .
srip132551 chr9 30674448 30674448 . unknown germline validated no 149 .
srip133485 chr9 32463896 32463896 - unknown germline validated no 149 DDX58
srip137631 chrX 57806439 57806439 - unknown germline . no 149 .