euL1db
The European database of L1-HS retrotransposon insertions in humans

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   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

62 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip636 chr1 49428729 49428729 - unknown germline validated no 145 AGBL4
srip3174 chr1 105028216 105028216 + unknown germline . no 145 .
srip5091 chr1 169524869 169524869 + unknown germline validated no 145 F5
srip10574 chr10 91717633 91717633 - unknown germline . no 145 .
srip11796 chr10 124455218 124455218 + unknown germline . no 145 .
srip14169 chr11 41831797 41831797 . unknown germline validated no 145 .
srip15311 chr11 58171837 58171837 + unknown germline . no 145 .
srip17996 chr11 110377870 110377870 - unknown germline . no 145 .
srip19059 chr11 134305630 134305630 - unknown germline validated no 145 .
srip20451 chr12 25775838 25775838 - unknown germline . no 145 IFLTD1
srip21894 chr12 40147174 40147174 . unknown germline . no 145 .
srip24355 chr12 84955192 84955192 - unknown germline . no 145 .
srip24797 chr12 85506275 85506275 + unknown germline . no 145 LRRIQ1
srip26023 chr12 118186926 118186926 + unknown germline . no 145 KSR2
srip26327 chr12 126802928 126802928 - unknown germline . no 145 .
srip29507 chr13 61734484 61734484 . unknown germline validated no 145 .
srip30574 chr13 78055082 78055082 + unknown germline validated no 145 .
srip31494 chr13 85871603 85871603 - unknown germline . no 145 .
srip39490 chr15 34031838 34031838 - unknown germline validated no 145 RYR3
srip40175 chr15 47507328 47507328 - unknown germline validated no 145 SEMA6D
srip42469 chr15 83551623 83551623 - unknown germline validated no 145 HOMER2
srip52730 chr2 6798274 6798274 - unknown germline . no 145 .
srip53149 chr2 22706317 22706317 . unknown germline . no 145 .
srip53907 chr2 35879337 35879337 + unknown germline . no 145 .
srip55678 chr2 74087161 74087161 - unknown germline . no 145 STAMBP
srip58483 chr2 144010778 144010778 + unknown germline validated no 145 ARHGAP15
srip60097 chr2 178676244 178676244 - unknown germline validated no 145 PDE11A
srip62107 chr2 221503749 221503749 . unknown germline validated no 145 .
srip62440 chr2 232482721 232482721 + unknown germline validated no 145 .
srip64416 chr20 29638569 29638569 . unknown germline validated no 145 .
srip73301 chr3 59852887 59852887 + unknown germline . no 145 FHIT
srip73826 chr3 75101220 75101220 + unknown germline . no 145 .
srip75661 chr3 85663351 85663351 - unknown germline . no 145 CADM2
srip76109 chr3 98775487 98775487 - unknown germline . no 145 .
srip77481 chr3 131069768 131069768 + unknown germline . no 145 LOC339874
srip83208 chr4 18194343 18194343 - unknown germline validated no 145 .
srip91113 chr4 126052289 126052289 - unknown germline . no 145 .
srip92117 chr4 134596419 134596419 + unknown germline . no 145 .
srip92590 chr4 138177324 138177324 + unknown germline validated no 145 .
srip97617 chr5 33633332 33633332 . unknown germline validated no 145 ADAMTS12
srip100500 chr5 89450768 89450768 + unknown germline validated no 145 .
srip103528 chr5 132934084 132934084 + unknown germline . no 145 FSTL4
srip104138 chr5 144330994 144330994 . unknown germline . no 145 .
srip110062 chr6 69198728 69198728 . unknown germline validated no 145 .
srip110653 chr6 77379921 77379921 - unknown germline . no 145 .
srip114350 chr6 148163569 148163569 + unknown germline validated no 145 .
srip115025 chr6 157968609 157968609 . unknown germline validated no 145 ZDHHC14
srip116467 chr7 24176635 24176635 + unknown germline . no 145 .
srip116493 chr7 24412242 24412242 + unknown germline . no 145 .
srip117186 chr7 46501502 46501502 + unknown germline . no 145 .
srip120367 chr7 86541673 86541673 . unknown germline . no 145 KIAA1324L
srip121479 chr7 107829248 107829248 + unknown germline validated no 145 NRCAM
srip122173 chr7 110484748 110484748 + unknown germline . no 145 IMMP2L
srip123301 chr7 142818641 142818641 + unknown germline . no 145 .
srip127559 chr8 75723721 75723721 . unknown germline . no 145 .
srip127948 chr8 83740678 83740678 . unknown germline . no 145 .
srip129386 chr8 115881769 115881769 + unknown germline . no 145 .
srip132550 chr9 30674448 30674448 . unknown germline validated no 145 .
srip133483 chr9 32463896 32463896 - unknown germline validated no 145 DDX58
srip134996 chr9 105073653 105073653 . unknown germline . no 145 .
srip139739 chrX 98264288 98264288 . unknown germline . no 145 .
srip140433 chrX 111557749 111557749 - unknown germline validated no 145 ZCCHC16