euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

53 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip2372 chr1 90914497 90914497 + unknown germline . no 122 .
srip3863 chr1 119553348 119553348 + unknown germline validated no 122 .
srip4665 chr1 165531922 165531922 . unknown germline . no 122 LRRC52;LOC400794
srip7937 chr10 19216651 19216651 . unknown germline . no 122 .
srip13212 chr11 29463794 29463794 + unknown germline . no 122 .
srip14621 chr11 48360716 48360716 - unknown germline validated no 122 .
srip15293 chr11 58171837 58171837 + unknown germline . no 122 .
srip18365 chr11 122300403 122300403 - unknown germline . no 122 .
srip19007 chr11 134305630 134305630 - unknown germline validated no 122 .
srip21084 chr12 33630064 33630064 - unknown germline . no 122 .
srip26057 chr12 118186926 118186926 + unknown germline . no 122 KSR2
srip27326 chr13 27488105 27488105 + unknown germline . no 122 .
srip28250 chr13 49957889 49957889 + unknown germline . no 122 CAB39L
srip28998 chr13 61462331 61462331 - unknown germline validated no 122 .
srip34354 chr14 23097270 23097270 - unknown germline . no 122 .
srip35797 chr14 36674743 36674743 + unknown germline . no 122 .
srip36983 chr14 48117869 48117869 - unknown germline . no 122 MDGA2
srip48486 chr17 69614963 69614963 + unknown germline . no 122 .
srip49401 chr18 28732901 28732901 - unknown germline validated no 122 DSC1
srip56418 chr2 83188324 83188324 . unknown germline validated no 122 .
srip58301 chr2 142785301 142785301 + unknown germline . no 122 LRP1B
srip58492 chr2 144010778 144010778 + unknown germline validated no 122 ARHGAP15
srip59037 chr2 147020924 147020924 + unknown germline validated no 122 .
srip64394 chr20 29638569 29638569 . unknown germline validated no 122 .
srip65183 chr20 53076373 53076373 + unknown germline . no 122 .
srip73256 chr3 59852887 59852887 + unknown germline . no 122 FHIT
srip73809 chr3 75101220 75101220 + unknown germline . no 122 .
srip76005 chr3 95654406 95654406 + unknown germline . no 122 .
srip84320 chr4 44181735 44181735 - unknown germline . no 122 KCTD8
srip86991 chr4 71093302 71093302 . unknown germline . no 122 C4orf7
srip90661 chr4 118765253 118765253 + unknown germline . no 122 .
srip92157 chr4 134596419 134596419 + unknown germline . no 122 .
srip92554 chr4 138177324 138177324 + unknown germline validated no 122 .
srip93277 chr4 150798827 150798827 - unknown germline . no 122 .
srip95926 chr5 8749509 8749509 . unknown germline . no 122 .
srip97689 chr5 33633332 33633332 . unknown germline validated no 122 ADAMTS12
srip100539 chr5 89450768 89450768 + unknown germline validated no 122 .
srip101632 chr5 105935355 105935355 + unknown germline . no 122 .
srip101945 chr5 108914021 108914021 + unknown germline . no 122 .
srip102965 chr5 124155328 124155328 - unknown germline . no 122 .
srip108300 chr6 45852710 45852710 - unknown germline . no 122 .
srip110557 chr6 76637524 76637524 + unknown germline . no 122 IMPG1
srip111107 chr6 77980671 77980671 - unknown germline validated no 122 .
srip111457 chr6 85947727 85947727 - unknown germline validated no 122 .
srip114970 chr6 157968609 157968609 . unknown germline validated no 122 ZDHHC14
srip116424 chr7 21319590 21319590 - unknown germline . no 122 .
srip119879 chr7 84901725 84901725 - unknown germline validated no 122 .
srip121558 chr7 107829248 107829248 + unknown germline validated no 122 NRCAM
srip122200 chr7 110484748 110484748 + unknown germline . no 122 IMMP2L
srip125520 chr8 24926557 24926557 - unknown germline validated no 122 .
srip127352 chr8 72399225 72399225 - unknown germline . no 122 .
srip136543 chrX 14434992 14434992 + unknown germline . no 122 .
srip139428 chrX 85781782 85781782 . unknown germline . no 122 DACH2