euL1db
The European database of L1-HS retrotransposon insertions in humans

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   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

297 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip212 chr1 32031094 32031094 + unknown germline . no 339 .
srip972 chr1 57711299 57711299 - unknown germline . no 339 DAB1
srip1309 chr1 67544680 67544680 + unknown germline . yes 339 .
srip1583 chr1 71248578 71248578 + unknown germline . no 339 .
srip2301 chr1 90914489 90914489 + unknown germline . no 339 .
srip3351 chr1 111295490 111295490 - unknown germline . no 339 .
srip3454 chr1 111526302 111526302 - unknown germline . no 339 .
srip3766 chr1 119553342 119553342 + unknown germline . no 339 .
srip4344 chr1 158238966 158238966 - unknown germline . no 339 .
srip4679 chr1 165553121 165553121 - unknown germline . no 339 .
srip4898 chr1 169524846 169524846 + unknown germline . no 339 F5
srip5314 chr1 179575350 179575350 - unknown germline . no 339 TDRD5
srip5594 chr1 186849107 186849107 + unknown germline . no 339 PLA2G4A
srip5695 chr1 189686334 189686334 + unknown germline . no 339 .
srip6416 chr1 216854791 216854791 + unknown germline . no 339 ESRRG
srip6565 chr1 220378213 220378213 - unknown germline . no 339 RAB3GAP2
srip7101 chr1 231079125 231079125 + unknown germline . no 339 TTC13
srip7488 chr1 249191481 249191481 + unknown germline . no 339 .
srip7861 chr10 19216642 19216642 + unknown germline . no 339 .
srip8199 chr10 25707553 25707553 . unknown germline validated no 339 GPR158
srip8249 chr10 25707676 25707676 - unknown germline . no 339 GPR158
srip9057 chr10 61650710 61650710 - unknown germline . no 339 CCDC6
srip9150 chr10 66831656 66831656 - unknown germline . no 339 .
srip9285 chr10 67260458 67260458 + unknown germline . no 339 .
srip9735 chr10 78577575 78577575 - unknown germline . no 339 .
srip9858 chr10 83111793 83111793 - unknown germline . no 339 .
srip10123 chr10 87505368 87505368 - unknown germline . no 339 GRID1
srip10829 chr10 108614249 108614249 - unknown germline . no 339 SORCS1
srip10940 chr10 110453451 110453451 + unknown germline . no 339 .
srip11433 chr10 120183449 120183449 - unknown germline . no 339 .
srip12064 chr11 1112673 1112673 - unknown germline . no 339 .
srip13108 chr11 28287509 28287509 + unknown germline . no 339 METTL15
srip13360 chr11 31850361 31850361 + unknown germline . no 339 DKFZp686K1684
srip13452 chr11 33670111 33670111 + unknown germline . no 339 C11orf41
srip13834 chr11 33670213 33670213 . unknown germline validated no 339 C11orf41
srip14036 chr11 41831785 41831785 - unknown germline . no 339 .
srip14444 chr11 42450857 42450857 - unknown germline . no 339 .
srip14656 chr11 48360720 48360720 - unknown germline . no 339 .
srip15609 chr11 60364495 60364495 - unknown germline . no 339 .
srip15963 chr11 72760551 72760551 + unknown germline . no 339 FCHSD2
srip16230 chr11 79917402 79917402 + unknown germline . yes 339 .
srip16596 chr11 83750344 83750344 - unknown germline . no 339 DLG2
srip17429 chr11 99502893 99502893 + unknown germline . no 339 CNTN5
srip17533 chr11 104556111 104556111 - unknown germline . no 339 .
srip17888 chr11 110377868 110377868 - unknown germline . no 339 .
srip18727 chr11 134305626 134305626 - unknown germline . no 339 .
srip21209 chr12 34276519 34276519 - unknown germline . no 339 .
srip21583 chr12 34661714 34661714 + unknown germline . no 339 .
srip22599 chr12 47873142 47873142 + unknown germline . no 339 .
srip23055 chr12 63837601 63837601 - unknown germline . no 339 .
srip23196 chr12 66978550 66978550 + unknown germline . no 339 GRIP1
srip23573 chr12 74781462 74781462 - unknown germline . no 339 .
srip23859 chr12 79338008 79338008 - unknown germline . no 339 SYT1
srip24236 chr12 84955187 84955187 - unknown germline . no 339 .
srip25694 chr12 118057334 118057334 - unknown germline . no 339 KSR2
srip26529 chr12 127579218 127579218 + unknown germline . no 339 .
srip26780 chr13 22489779 22489779 + unknown germline . no 339 .
srip27047 chr13 24683488 24683488 - unknown germline . no 339 .
srip27165 chr13 27488098 27488098 + unknown germline . no 339 .
srip27693 chr13 37724174 37724174 + unknown germline . no 339 .
srip28297 chr13 55237995 55237995 + unknown germline . no 339 .
srip28333 chr13 56403646 56403646 . unknown germline validated no 339 .
srip28531 chr13 61221130 61221130 - unknown germline . no 339 .
srip28760 chr13 61462321 61462321 - unknown germline . no 339 .
srip29287 chr13 61734471 61734471 + unknown germline . no 339 .
srip29703 chr13 64569827 64569827 - unknown germline . no 339 .
srip30006 chr13 67084854 67084854 - unknown germline . no 339 PCDH9
srip30245 chr13 72968659 72968659 + unknown germline . no 339 .
srip30399 chr13 72969088 72969088 . unknown germline validated no 339 .
srip30720 chr13 79259770 79259770 - unknown germline . no 339 .
srip31255 chr13 85871588 85871588 - unknown germline . no 339 .
srip31698 chr13 86339770 86339770 . unknown germline validated no 339 .
srip31730 chr13 86340132 86340132 - unknown germline . no 339 .
srip32413 chr13 91626601 91626601 . unknown germline validated no 339 .
srip32549 chr13 96116756 96116756 - unknown germline . no 339 CLDN10
srip32900 chr13 97421625 97421625 + unknown germline . no 339 HS6ST3
srip33061 chr13 101391109 101391109 + unknown germline . no 339 .
srip33249 chr13 104296211 104296211 - unknown germline . no 339 .
srip33861 chr13 106623455 106623455 - unknown germline . no 339 .
srip34094 chr13 107857461 107857461 - unknown germline . no 339 FAM155A
srip34504 chr14 26581534 26581534 - unknown germline . no 339 .
srip34652 chr14 28116812 28116812 + unknown germline . no 339 LOC728755
srip34894 chr14 28301203 28301203 + unknown germline . no 339 .
srip35412 chr14 31150794 31150794 - unknown germline . no 339 SCFD1
srip35639 chr14 36674732 36674732 + unknown germline . no 339 .
srip36349 chr14 39875169 39875169 . unknown germline validated no 339 FBXO33
srip36433 chr14 42122864 42122864 + unknown germline . no 339 LRFN5
srip36510 chr14 42274786 42274786 - unknown germline . no 339 LRFN5
srip36620 chr14 43197213 43197213 + unknown germline . no 339 .
srip36822 chr14 46651945 46651945 - unknown germline . no 339 .
srip36958 chr14 48117859 48117859 - unknown germline . no 339 MDGA2
srip37445 chr14 60617378 60617378 - unknown germline . no 339 DHRS7
srip37735 chr14 67419854 67419854 - unknown germline . no 339 GPHN
srip38048 chr14 71197769 71197769 + unknown germline . no 339 MAP3K9
srip38770 chr14 86952502 86952502 - unknown germline . no 339 .
srip38792 chr14 88415455 88415455 + unknown germline . no 339 GALC
srip39150 chr15 28175699 28175699 . unknown germline validated no 339 OCA2
srip39178 chr15 28175778 28175778 - unknown germline . no 339 OCA2
srip39360 chr15 34031588 34031588 . unknown germline validated no 339 RYR3
srip39378 chr15 34031826 34031826 - unknown germline . no 339 RYR3
srip40397 chr15 49652329 49652329 + unknown germline . no 339 C15orf33
srip41869 chr15 71388519 71388519 - unknown germline . no 339 .
srip42093 chr15 72085476 72085476 + unknown germline . no 339 .
srip42701 chr15 98046018 98046018 + unknown germline . no 339 .
srip42816 chr15 98051276 98051276 + unknown germline . no 339 .
srip43653 chr16 6794010 6794010 . unknown germline validated no 339 RBFOX1
srip43687 chr16 6987037 6987037 + unknown germline . no 339 RBFOX1
srip43902 chr16 8542726 8542726 - unknown germline . no 339 .
srip44236 chr16 20365406 20365406 - unknown germline . no 339 .
srip44414 chr16 22802319 22802319 + unknown germline . no 339 .
srip44560 chr16 28002101 28002101 - unknown germline . no 339 GSG1L
srip44628 chr16 32523854 32523854 . unknown germline validated no 339 .
srip44652 chr16 32523869 32523869 + unknown germline . no 339 .
srip44860 chr16 32525600 32525600 - unknown germline . no 339 .
srip45246 chr16 33976979 33976979 - unknown germline . no 339 .
srip46058 chr16 71027998 71027998 + unknown germline . no 339 HYDIN
srip46357 chr16 71028097 71028097 . unknown germline validated no 339 HYDIN
srip46637 chr17 11764485 11764485 + unknown germline . no 339 DNAH9
srip47066 chr17 28398292 28398292 + unknown germline . no 339 EFCAB5
srip48900 chr18 12491490 12491490 . unknown germline validated no 339 SPIRE1
srip49095 chr18 27219174 27219174 - unknown germline . no 339 .
srip49268 chr18 28732884 28732884 - unknown germline . no 339 DSC1
srip49593 chr18 34567349 34567349 - unknown germline . yes 339 KIAA1328
srip49900 chr18 49216206 49216206 - unknown germline . no 339 .
srip50948 chr18 59579948 59579948 + unknown germline . no 339 .
srip51965 chr19 15152136 15152136 - unknown germline . no 339 .
srip52052 chr19 22500496 22500496 - unknown germline . no 339 .
srip52103 chr19 23825804 23825804 - unknown germline . no 339 .
srip52593 chr2 3783028 3783028 - unknown germline . no 339 DCDC2C
srip52949 chr2 13631539 13631539 - unknown germline . no 339 .
srip53226 chr2 23190984 23190984 - unknown germline . no 339 .
srip54683 chr2 44476200 44476200 - unknown germline . no 339 .
srip54792 chr2 51655388 51655388 + unknown germline . no 339 .
srip55068 chr2 66366199 66366199 + unknown germline . no 339 .
srip55393 chr2 72413315 72413315 - unknown germline . no 339 EXOC6B
srip56001 chr2 82098017 82098017 + unknown germline . no 339 .
srip57075 chr2 108901173 108901173 - unknown germline . no 339 .
srip57677 chr2 129573941 129573941 + unknown germline . no 339 .
srip58602 chr2 144304698 144304698 . unknown germline validated no 339 ARHGAP15
srip58745 chr2 147020911 147020911 + unknown germline . no 339 .
srip59309 chr2 152887261 152887261 - unknown germline . no 339 CACNB4
srip60576 chr2 182473910 182473910 + unknown germline . no 339 CERKL
srip60720 chr2 191478683 191478683 - unknown germline . no 339 .
srip61051 chr2 199541819 199541819 - unknown germline . no 339 .
srip61427 chr2 209682250 209682250 - unknown germline . no 339 .
srip61690 chr2 213558054 213558054 - unknown germline . no 339 .
srip62873 chr20 6173654 6173654 + unknown germline . no 339 .
srip63568 chr20 17860913 17860913 + unknown germline . no 339 .
srip63745 chr20 21148878 21148878 - unknown germline . no 339 PLK1S1
srip64208 chr20 29638560 29638560 + unknown germline . no 339 .
srip64638 chr20 41952086 41952086 - unknown germline . no 339 .
srip65000 chr20 44157049 44157049 - unknown germline . no 339 .
srip66337 chr21 24060316 24060316 - unknown germline . no 339 .
srip66984 chr21 30104035 30104035 + unknown germline . no 339 .
srip67293 chr22 22486356 22486356 - unknown germline . no 339 IGL@
srip67620 chr22 22715563 22715563 + unknown germline . no 339 IGL@
srip67979 chr22 29007687 29007687 - unknown germline . yes 339 TTC28
srip68329 chr22 41019372 41019372 - unknown germline . no 339 MKL1
srip68625 chr22 44324578 44324578 - unknown germline . no 339 PNPLA3
srip69916 chr3 5189072 5189072 - unknown germline . no 339 ARL8B
srip70673 chr3 24987634 24987634 . unknown germline validated no 339 .
srip70690 chr3 24987849 24987849 - unknown germline . no 339 .
srip70950 chr3 26524436 26524436 - unknown germline . no 339 .
srip71479 chr3 36146939 36146939 - unknown germline . no 339 .
srip71726 chr3 38626054 38626054 + unknown germline . no 339 SCN5A
srip72221 chr3 55010457 55010457 + unknown germline . no 339 CACNA2D3
srip72405 chr3 55788556 55788556 + unknown germline . no 339 ERC2
srip72764 chr3 55788771 55788771 . unknown germline validated no 339 ERC2
srip72899 chr3 59852877 59852877 + unknown germline . no 339 FHIT
srip73612 chr3 75101200 75101200 + unknown germline . no 339 .
srip74114 chr3 79660944 79660944 + unknown germline . no 339 ROBO1
srip74659 chr3 81990979 81990979 - unknown germline . no 339 .
srip75144 chr3 84593258 84593258 - unknown germline . no 339 .
srip75356 chr3 85576539 85576539 + unknown germline . no 339 CADM2
srip76251 chr3 101936459 101936459 + unknown germline . no 339 .
srip77942 chr3 139634686 139634686 - unknown germline . no 339 .
srip79511 chr3 166764464 166764464 - unknown germline . no 339 .
srip79717 chr3 169269939 169269939 + unknown germline . no 339 MECOM
srip80510 chr3 180877922 180877922 + unknown germline . no 339 .
srip80993 chr3 184677979 184677979 - unknown germline . no 339 VPS8
srip81683 chr3 188234408 188234408 + unknown germline . no 339 LPP
srip81891 chr3 193354152 193354152 - unknown germline . no 339 OPA1
srip82808 chr4 18162627 18162627 - unknown germline . no 339 .
srip83419 chr4 22909082 22909082 - unknown germline . no 339 .
srip84122 chr4 42984135 42984135 + unknown germline . no 339 GRXCR1
srip84363 chr4 45890702 45890702 - unknown germline . no 339 .
srip85092 chr4 53628460 53628460 + unknown germline . no 339 .
srip85669 chr4 58917503 58917503 - unknown germline . no 339 .
srip86024 chr4 61697133 61697133 - unknown germline . no 339 .
srip86694 chr4 69612552 69612552 - unknown germline . no 339 .
srip86850 chr4 71093284 71093284 - unknown germline . no 339 C4orf7
srip86882 chr4 71093285 71093285 + unknown germline . no 339 C4orf7
srip87245 chr4 80768521 80768521 + unknown germline . no 339 GDEP
srip88450 chr4 103043669 103043669 - unknown germline . no 339 .
srip89087 chr4 104930177 104930177 + unknown germline . no 339 .
srip89336 chr4 107862156 107862156 - unknown germline . no 339 DKK2
srip90065 chr4 115132680 115132680 + unknown germline . no 339 .
srip90459 chr4 117153199 117153199 - unknown germline . no 339 .
srip91355 chr4 131551685 131551685 + unknown germline . no 339 .
srip91677 chr4 132357338 132357338 + unknown germline . no 339 .
srip91916 chr4 134596403 134596403 + unknown germline . no 339 .
srip92879 chr4 140647742 140647742 - unknown germline . no 339 MGST2;MAML3
srip93471 chr4 153061908 153061908 - unknown germline . no 339 .
srip94215 chr4 167476673 167476673 - unknown germline . no 339 .
srip94731 chr4 177308485 177308485 - unknown germline . no 339 .
srip94989 chr4 181481032 181481032 - unknown germline . no 339 .
srip95789 chr5 8749504 8749504 + unknown germline . no 339 .
srip96147 chr5 10201836 10201836 . unknown germline validated no 339 .
srip96170 chr5 11391249 11391249 + unknown germline . no 339 CTNND2
srip96526 chr5 15913061 15913061 + unknown germline . no 339 FBXL7
srip97264 chr5 29575784 29575784 + unknown germline . no 339 .
srip97407 chr5 33633321 33633321 - unknown germline . no 339 ADAMTS12
srip98447 chr5 44139101 44139101 - unknown germline . no 339 .
srip98908 chr5 52575618 52575618 + unknown germline . no 339 .
srip99217 chr5 67191247 67191247 + unknown germline . no 339 .
srip99911 chr5 84239624 84239624 - unknown germline . no 339 .
srip100215 chr5 89450757 89450757 + unknown germline . no 339 .
srip101121 chr5 96952628 96952628 - unknown germline . no 339 .
srip101283 chr5 99234391 99234391 - unknown germline . no 339 .
srip102027 chr5 109480243 109480243 - unknown germline . no 339 .
srip102924 chr5 124155317 124155317 - unknown germline . no 339 .
srip103058 chr5 125012524 125012524 - unknown germline . no 339 .
srip104072 chr5 144330983 144330983 - unknown germline . no 339 .
srip104418 chr5 147338105 147338105 - unknown germline . yes 339 .
srip104651 chr5 152982343 152982343 - unknown germline . no 339 GRIA1
srip104992 chr5 155619852 155619852 + unknown germline . no 339 .
srip105937 chr5 171310661 171310661 - unknown germline . no 339 FBXW11
srip105995 chr5 172722551 172722551 + unknown germline . no 339 .
srip106162 chr5 177401287 177401287 + unknown germline . no 339 .
srip106406 chr5 180329628 180329628 + unknown germline . no 339 BTNL8
srip107163 chr6 13503024 13503024 + unknown germline . no 339 .
srip107805 chr6 27996740 27996740 - unknown germline . no 339 .
srip108408 chr6 46310275 46310275 + unknown germline . no 339 .
srip109371 chr6 63368184 63368184 + unknown germline . no 339 .
srip109632 chr6 65105560 65105560 - unknown germline . no 339 EYS
srip110198 chr6 73089780 73089780 + unknown germline . no 339 RIMS1
srip110741 chr6 77980628 77980628 - unknown germline . no 339 .
srip111523 chr6 89122014 89122014 - unknown germline . no 339 .
srip111845 chr6 91669497 91669497 - unknown germline . no 339 .
srip112305 chr6 93595484 93595484 - unknown germline . no 339 .
srip112729 chr6 102845860 102845860 . unknown germline validated no 339 .
srip113998 chr6 145500885 145500885 - unknown germline . no 339 .
srip114204 chr6 146301931 146301931 - unknown germline . no 339 .
srip115263 chr6 162181244 162181244 + unknown germline . no 339 PARK2
srip115868 chr6 163113050 163113050 - unknown germline . no 339 PARK2
srip116124 chr7 8019364 8019364 . unknown germline validated no 339 GLCCI1
srip116953 chr7 42529738 42529738 . unknown germline validated no 339 .
srip117271 chr7 52789428 52789428 + unknown germline . no 339 .
srip118051 chr7 62492918 62492918 + unknown germline . no 339 .
srip118695 chr7 70188666 70188666 - unknown germline . no 339 AUTS2
srip119012 chr7 76919295 76919295 + unknown germline . no 339 CCDC146
srip119242 chr7 82030907 82030907 - unknown germline . no 339 CACNA2D1
srip119489 chr7 84901705 84901705 - unknown germline . no 339 .
srip120278 chr7 85291647 85291647 - unknown germline . no 339 .
srip120484 chr7 90331895 90331895 - unknown germline . no 339 .
srip120593 chr7 92680706 92680706 - unknown germline . no 339 .
srip121039 chr7 105459573 105459573 - unknown germline . no 339 ATXN7L1
srip121240 chr7 107829239 107829239 + unknown germline . no 339 NRCAM
srip122029 chr7 108325982 108325982 . unknown germline validated no 339 .
srip122612 chr7 122124530 122124530 + unknown germline . no 339 CADPS2
srip122759 chr7 127603391 127603391 + unknown germline . no 339 SND1
srip123370 chr7 144260810 144260810 + unknown germline . no 339 TPK1
srip123539 chr7 146513183 146513183 - unknown germline . no 339 CNTNAP2
srip123853 chr8 4345013 4345013 - unknown germline . no 339 CSMD1
srip124152 chr8 5829265 5829265 - unknown germline . no 339 .
srip125132 chr8 24421536 24421536 - unknown germline . no 339 .
srip125302 chr8 24926529 24926529 - unknown germline . no 339 .
srip126499 chr8 64686904 64686904 - unknown germline . no 339 LOC286184
srip126659 chr8 67381850 67381850 - unknown germline . no 339 .
srip127075 chr8 72399210 72399210 - unknown germline . no 339 .
srip127703 chr8 83640785 83640785 + unknown germline . no 339 .
srip128103 chr8 85428593 85428593 + unknown germline . no 339 RALYL
srip128562 chr8 99524288 99524288 - unknown germline . no 339 STK3
srip129708 chr8 123098837 123098837 - unknown germline . no 339 .
srip129734 chr8 123111073 123111073 + unknown germline . no 339 .
srip130219 chr8 132865833 132865833 + unknown germline . no 339 .
srip130788 chr9 6290459 6290459 + unknown germline . no 339 .
srip131215 chr9 7741384 7741384 + unknown germline . no 339 .
srip131468 chr9 9236589 9236589 + unknown germline . no 339 PTPRD
srip131768 chr9 20063550 20063550 - unknown germline . no 339 .
srip131964 chr9 29114733 29114733 - unknown germline . no 339 .
srip132649 chr9 31748212 31748212 + unknown germline . no 339 .
srip133005 chr9 32463872 32463872 - unknown germline . no 339 DDX58
srip134880 chr9 105073640 105073640 + unknown germline . no 339 .
srip135296 chr9 108539394 108539394 - unknown germline . no 339 .
srip135682 chr9 118083655 118083655 . unknown germline validated no 339 DEC1
srip135722 chr9 118083818 118083818 - unknown germline . no 339 DEC1
srip136004 chr9 119820615 119820615 + unknown germline . no 339 ASTN2
srip136070 chr9 125419544 125419544 + unknown germline . no 339 .
srip136642 chrX 21333092 21333092 + unknown germline . no 339 .
srip137678 chrX 58482468 58482468 - unknown germline . no 339 .
srip138827 chrX 75949527 75949527 - unknown germline . no 339 .
srip140343 chrX 111557736 111557736 - unknown germline . no 339 ZCCHC16
srip140904 chrX 120962306 120962306 - unknown germline . no 339 .
srip141268 chrX 129525256 129525256 - unknown germline . no 339 .
srip141514 chrX 134521005 134521005 - unknown germline . no 339 .
srip142393 chrY 16680066 16680066 - unknown germline . no 339 NLGN4Y