euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

193 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip174 chr1 31041664 31041664 + L1-Ta germline . no 639 .
srip526 chr1 42483962 42483962 + L1-Ta germline . no 639 HIVEP3
srip1180 chr1 65909392 65909392 - L1-Ta germline . no 639 LEPR
srip2124 chr1 86398798 86398798 + L1-Ta germline . no 639 COL24A1
srip2181 chr1 86741680 86741680 + L1-Ta germline . yes 639 .
srip2210 chr1 87144762 87144762 - L1-Ta germline . no 639 .
srip3218 chr1 105386449 105386449 - L1-Ta germline . no 639 .
srip3947 chr1 121478354 121478354 + L1-Ta germline . yes 639 .
srip4234 chr1 157732948 157732948 + L1-Ta germline . no 639 FCRL2
srip4262 chr1 158238664 158238664 + L1-Ta germline . yes 639 .
srip4546 chr1 163231881 163231881 - L1-Ta germline . no 639 LOC100505773
srip4784 chr1 165940104 165940104 - L1-Ta germline . yes 639 .
srip4821 chr1 166212290 166212290 - L1-Ta germline . yes 639 .
srip7584 chr10 5293335 5293335 + L1-Ta germline . yes 639 .
srip8691 chr10 32929792 32929792 - L1-Ta germline . no 639 C10orf68
srip8800 chr10 39051305 39051305 - L1-Ta germline validated no 639 .
srip8949 chr10 58863547 58863547 - L1-Ta germline . no 639 .
srip10766 chr10 107137008 107137008 - L1-Ta germline . no 639 .
srip11261 chr10 110846814 110846814 + L1-Ta germline . yes 639 .
srip12688 chr11 24355519 24355519 + L1-Ta germline . yes 639 .
srip13645 chr11 33670122 33670122 + L1-Ta germline validated no 639 C11orf41
srip17220 chr11 94684419 94684419 + L1-Ta germline . no 639 .
srip17253 chr11 95175423 95175423 + L1-Ta germline . no 639 .
srip17368 chr11 99478828 99478828 + L1-Ta germline . yes 639 CNTN5
srip20334 chr12 17894177 17894177 - L1-Ta germline . no 639 .
srip21916 chr12 42238062 42238062 - L1-Ta germline . no 639 .
srip22436 chr12 44501995 44501995 - L1-Ta germline . yes 639 TMEM117
srip23391 chr12 70167057 70167057 - L1-Ta germline . no 639 RAB3IP
srip25268 chr12 98672913 98672913 + L1-Ta germline . yes 639 .
srip27572 chr13 33441812 33441812 - L1-Ta germline . no 639 .
srip28347 chr13 57793451 57793451 - L1-Ta germline . no 639 .
srip28455 chr13 59088395 59088395 + L1-Ta germline . no 639 .
srip28682 chr13 61462318 61462318 - L1-Ta germline . no 639 .
srip30517 chr13 77186902 77186902 - L1-Ta germline . no 639 .
srip32036 chr13 86502081 86502081 + L1-Ta germline . no 639 .
srip32200 chr13 88851194 88851194 - L1-Ta germline . no 639 .
srip36387 chr14 41197899 41197899 - L1-Ta germline . no 639 .
srip37984 chr14 71020049 71020049 + L1-Ta germline . no 639 .
srip38127 chr14 71197779 71197779 + L1-Ta germline validated no 639 MAP3K9
srip38871 chr14 95605326 95605326 + L1-Ta germline . no 639 DICER1
srip40759 chr15 51875289 51875289 - L1-Ta germline . no 639 DMXL2
srip40818 chr15 53448042 53448042 - L1-Ta germline . no 639 .
srip41287 chr15 58012013 58012013 - L1-Ta germline . no 639 .
srip41785 chr15 71027483 71027483 + L1-Ta germline . yes 639 UACA
srip43828 chr16 7925421 7925421 + L1-Ta germline . no 639 .
srip44151 chr16 18832538 18832538 - L1-Ta germline . no 639 SMG1
srip47466 chr17 32192799 32192799 + L1-Ta germline . yes 639 ACCN1
srip47597 chr17 32813608 32813608 + L1-Ta germline . no 639 .
srip49497 chr18 30185593 30185593 - L1-Ta germline . no 639 .
srip49721 chr18 34567457 34567457 + L1-Ta germline . yes 639 KIAA1328
srip50850 chr18 58172211 58172211 - L1-Ta germline . no 639 .
srip51032 chr18 59763726 59763726 - L1-Ta germline . no 639 PIGN
srip51193 chr18 63446487 63446487 - L1-Ta germline . no 639 CDH7
srip51263 chr18 68413712 68413712 - L1-Ta germline . no 639 .
srip51333 chr18 69024727 69024727 + L1-Ta germline . yes 639 .
srip52480 chr19 55091547 55091547 - L1-Ta germline . no 639 LILRA2
srip52544 chr2 988745 988745 - L1-Ta germline . no 639 SNTG2
srip54359 chr2 41777137 41777137 - L1-Ta germline . no 639 .
srip54555 chr2 42051402 42051402 + L1-Ta germline . no 639 .
srip55611 chr2 73354355 73354355 - L1-Ta germline . no 639 .
srip55933 chr2 81834768 81834768 - L1-Ta germline . no 639 .
srip56280 chr2 83068216 83068216 + L1-Ta germline . yes 639 .
srip56969 chr2 108631988 108631988 - L1-Ta germline . no 639 .
srip57374 chr2 118667183 118667183 - L1-Ta germline . no 639 .
srip57591 chr2 126510571 126510571 + L1-Ta germline . yes 639 .
srip57950 chr2 139785112 139785112 - L1-Ta germline . no 639 .
srip59438 chr2 153864262 153864262 - L1-Ta germline . no 639 .
srip59913 chr2 176346680 176346680 - L1-Ta germline . no 639 .
srip61297 chr2 205631655 205631655 - L1-Ta germline . no 639 PARD3B
srip61728 chr2 214647628 214647628 - L1-Ta germline . no 639 SPAG16
srip61796 chr2 218176494 218176494 + L1-Ta germline . yes 639 DIRC3
srip62686 chr2 239902375 239902375 - L1-Ta germline . no 639 .
srip63250 chr20 11619480 11619480 + L1-Ta germline . no 639 .
srip63269 chr20 12781652 12781652 - L1-Ta germline . no 639 .
srip63953 chr20 23412776 23412776 + L1-Ta germline . yes 639 .
srip65136 chr20 51779972 51779972 - L1-Ta germline . yes 639 TSHZ2
srip67725 chr22 22715585 22715585 + L1-Ta germline . no 639 IGL@
srip67894 chr22 28455877 28455877 - L1-Ta germline . no 639 TTC28
srip68212 chr22 29065287 29065287 + L1-Ta germline . yes 639 TTC28
srip69657 chr3 656444 656444 - L1-Ta germline validated no 639 .
srip69727 chr3 2050178 2050178 + L1-Ta germline . yes 639 .
srip69853 chr3 4080917 4080917 - L1-Ta germline . yes 639 .
srip70828 chr3 25740941 25740941 - L1-Ta germline . no 639 .
srip70881 chr3 26439488 26439488 - L1-Ta germline . no 639 .
srip71979 chr3 41821477 41821477 + L1-Ta germline . yes 639 ULK4
srip72092 chr3 46824583 46824583 - L1-Ta germline . no 639 .
srip74583 chr3 81770349 81770349 + L1-Ta germline . yes 639 GBE1
srip76372 chr3 103275235 103275235 - L1-Ta germline . no 639 .
srip76461 chr3 105473860 105473860 - L1-Ta germline . no 639 CBLB
srip76635 chr3 109836400 109836400 - L1-Ta germline . no 639 .
srip76834 chr3 119581390 119581390 + L1-Ta germline . no 639 GSK3B
srip77096 chr3 123590712 123590712 + L1-Ta germline validated no 639 MYLK
srip77349 chr3 129972765 129972765 + L1-Ta germline . yes 639 COL6A4P2
srip77413 chr3 130352893 130352893 + L1-Ta germline . yes 639 COL6A6
srip77551 chr3 132664831 132664831 - L1-Ta germline . no 639 .
srip78905 chr3 154632590 154632590 + L1-Ta germline . yes 639 .
srip79201 chr3 158813156 158813156 - L1-Ta germline . yes 639 IQCJ;IQCJ-SCHIP1
srip80199 chr3 175677955 175677955 - L1-Ta germline . no 639 .
srip81372 chr3 186372123 186372123 + L1-Ta germline . no 639 .
srip81579 chr3 187835306 187835306 - L1-Ta germline . no 639 .
srip82616 chr4 15849204 15849204 + L1-Ta germline . no 639 CD38
srip83550 chr4 23622456 23622456 + L1-Ta germline . yes 639 .
srip83584 chr4 26929329 26929329 + L1-Ta germline . no 639 STIM2
srip83812 chr4 29321850 29321850 + L1-Ta germline . no 639 .
srip84515 chr4 46058194 46058194 + L1-Ta germline . no 639 GABRG1
srip84541 chr4 46799112 46799112 + L1-Ta germline . yes 639 COX7B2
srip84589 chr4 46883027 46883027 + L1-Ta germline . no 639 .
srip84634 chr4 46968005 46968005 + L1-Ta germline . no 639 GABRA4
srip84653 chr4 47007779 47007779 - L1-Ta germline . no 639 .
srip84981 chr4 48738022 48738022 + L1-Ta germline . no 639 FRYL
srip85573 chr4 58428313 58428313 - L1-Ta germline . no 639 .
srip85843 chr4 59442445 59442445 - L1-Ta germline . no 639 .
srip87411 chr4 80864880 80864880 + L1-Ta germline . yes 639 ANTXR2
srip87902 chr4 86607955 86607955 + L1-Ta germline . no 639 ARHGAP24
srip88050 chr4 88486275 88486275 + L1-Ta germline . yes 639 .
srip88326 chr4 99513572 99513572 - L1-Ta germline . no 639 TSPAN5
srip89881 chr4 112628959 112628959 + L1-Ta germline . no 639 .
srip90027 chr4 114763401 114763401 + L1-Ta germline . no 639 .
srip92288 chr4 136006539 136006539 + L1-Ta germline . no 639 .
srip94441 chr4 170281916 170281916 - L1-Ta germline . no 639 .
srip94496 chr4 170436610 170436610 - L1-Ta germline . no 639 NEK1
srip95087 chr4 182695155 182695155 - L1-Ta germline . no 639 .
srip96386 chr5 12197468 12197468 - L1-Ta germline . yes 639 .
srip99523 chr5 68263470 68263470 - L1-Ta germline . no 639 .
srip101421 chr5 99981611 99981611 + L1-Ta germline . yes 639 .
srip101508 chr5 105483500 105483500 - L1-Ta germline . no 639 .
srip102221 chr5 109480258 109480258 - L1-Ta germline validated no 639 .
srip102562 chr5 110474800 110474800 + L1-Ta germline . yes 639 .
srip102613 chr5 110643939 110643939 + L1-Ta germline . yes 639 CAMK4
srip102803 chr5 118941211 118941211 + L1-Ta germline . no 639 .
srip103910 chr5 138420464 138420464 + L1-Ta germline . yes 639 SIL1
srip104242 chr5 144473640 144473640 + L1-Ta germline . no 639 .
srip104908 chr5 155488954 155488954 - L1-Ta germline . yes 639 .
srip105128 chr5 155619862 155619862 + L1-Ta germline . no 639 .
srip105524 chr5 159351193 159351193 - L1-Ta germline . no 639 ADRA1B
srip106034 chr5 172829796 172829796 - L1-Ta germline . no 639 .
srip106606 chr6 2418002 2418002 - L1-Ta germline . no 639 .
srip107666 chr6 18910854 18910854 - L1-Ta germline . no 639 .
srip108189 chr6 39645329 39645329 - L1-Ta germline . yes 639 KIF6
srip108853 chr6 55594843 55594843 - L1-Ta germline . no 639 .
srip109829 chr6 66787597 66787597 - L1-Ta germline . no 639 .
srip110352 chr6 73995229 73995229 - L1-Ta germline . no 639 C6orf147
srip110676 chr6 77379936 77379936 - L1-Ta germline . no 639 .
srip111352 chr6 84049691 84049691 + L1-Ta germline . yes 639 ME1
srip112906 chr6 113030984 113030984 + L1-Ta germline . no 639 LOC100287612
srip113083 chr6 115899917 115899917 - L1-Ta germline . no 639 .
srip113137 chr6 117429369 117429369 + L1-Ta germline . no 639 .
srip113561 chr6 136712687 136712687 + L1-Ta germline . yes 639 MAP7
srip114331 chr6 148163569 148163569 + L1-Ta germline . no 639 .
srip114823 chr6 152497532 152497532 + L1-Ta germline . no 639 SYNE1
srip115738 chr6 162404960 162404960 + L1-Ta germline . no 639 PARK2
srip116642 chr7 28783416 28783416 - L1-Ta germline . no 639 CREB5
srip116706 chr7 30484894 30484894 + L1-Ta germline . no 639 NOD1
srip118551 chr7 69668336 69668336 + L1-Ta germline . yes 639 AUTS2
srip119650 chr7 84901721 84901721 - L1-Ta germline . no 639 .
srip122057 chr7 109548699 109548699 + L1-Ta germline . no 639 .
srip122314 chr7 111609264 111609264 + L1-Ta germline . yes 639 DOCK4
srip122993 chr7 129507566 129507566 + L1-Ta germline . no 639 UBE2H
srip123051 chr7 130386823 130386823 - L1-Ta germline . no 639 .
srip123186 chr7 141620449 141620449 - L1-Ta germline . no 639 .
srip123440 chr7 145063368 145063368 + L1-Ta germline . yes 639 .
srip124330 chr8 5829277 5829277 - L1-Ta germline . no 639 .
srip124769 chr8 9597567 9597567 + L1-Ta germline . yes 639 TNKS
srip124990 chr8 18768149 18768149 + L1-Ta germline . yes 639 PSD3
srip126441 chr8 62115146 62115146 + L1-Ta germline . no 639 NPM1P6
srip127535 chr8 75723721 75723721 + L1-Ta germline . no 639 .
srip128493 chr8 97911008 97911008 + L1-Ta germline . yes 639 PGCP
srip128648 chr8 100233000 100233000 - L1-Ta germline . no 639 VPS13B
srip128906 chr8 114072203 114072203 - L1-Ta germline . no 639 CSMD3
srip130393 chr8 137450317 137450317 - L1-Ta germline . yes 639 .
srip131612 chr9 10137698 10137698 + L1-Ta germline . yes 639 PTPRD
srip131885 chr9 28111894 28111894 - L1-Ta germline . yes 639 LINGO2
srip133190 chr9 32463884 32463884 - L1-Ta germline . no 639 DDX58
srip134004 chr9 73817320 73817320 - L1-Ta germline . no 639 .
srip134096 chr9 80014129 80014129 + L1-Ta germline . no 639 VPS13A
srip134277 chr9 86065262 86065262 - L1-Ta germline . no 639 FRMD3
srip134538 chr9 96875553 96875553 - L1-Ta germline . no 639 .
srip134563 chr9 98465870 98465870 + L1-Ta germline . yes 639 .
srip134725 chr9 102615582 102615582 - L1-Ta germline . no 639 NR4A3
srip134783 chr9 103749297 103749297 + L1-Ta germline . no 639 .
srip135629 chr9 113185472 113185472 + L1-Ta germline . no 639 SVEP1
srip136332 chrX 11731399 11731399 + L1-Ta germline . yes 639 .
srip136886 chrX 34837319 34837319 - L1-Ta germline . no 639 .
srip137541 chrX 55585146 55585146 - L1-Ta germline . no 639 .
srip137977 chrX 63233094 63233094 - L1-Ta germline . no 639 .
srip138469 chrX 72606851 72606851 + L1-Ta germline . no 639 .
srip138727 chrX 75543182 75543182 - L1-Ta germline . no 639 .
srip139326 chrX 85609830 85609830 + L1-Ta germline . yes 639 DACH2
srip139503 chrX 94857127 94857127 + L1-Ta germline . yes 639 .
srip140602 chrX 118569413 118569413 - L1-Ta germline . no 639 SLC25A43
srip140829 chrX 120397638 120397638 - L1-Ta germline . no 639 .
srip141423 chrX 130140534 130140534 + L1-Ta germline . no 639 .
srip142109 chrX 154745667 154745667 - L1-Ta germline . no 639 TMLHE