euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

196 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip520 chr1 42483961 42483961 + L1-Ta germline . no 207 HIVEP3
srip855 chr1 56405398 56405398 - L1-Ta germline . no 207 LOC100507652
srip2016 chr1 81855783 81855783 + L1-Ta germline . no 207 .
srip3891 chr1 119553352 119553352 + L1-Ta germline . no 207 .
srip4048 chr1 149216797 149216797 + L1-Ta germline . no 207 .
srip4176 chr1 152443898 152443898 - L1-Ta germline validated no 207 .
srip5038 chr1 169524859 169524859 + L1-Ta germline . no 207 F5
srip5417 chr1 179575362 179575362 - L1-Ta germline . no 207 TDRD5
srip5551 chr1 183969672 183969672 - L1-Ta germline . no 207 GLT25D2
srip5800 chr1 190973018 190973018 - L1-Ta germline . no 207 .
srip5803 chr1 191601021 191601021 + L1-Ta germline . no 207 .
srip6380 chr1 207579511 207579511 + L1-Ta germline . no 207 .
srip7410 chr1 242311577 242311577 + L1-Ta germline validated no 207 PLD5
srip8652 chr10 27775762 27775762 + L1-Ta germline . no 207 .
srip9696 chr10 74767506 74767506 - L1-Ta germline . no 207 P4HA1
srip11213 chr10 110453470 110453470 + L1-Ta germline . no 207 .
srip12872 chr11 25123354 25123354 - L1-Ta germline . no 207 .
srip13799 chr11 33670123 33670123 + L1-Ta germline . no 207 C11orf41
srip13855 chr11 36558472 36558472 - L1-Ta germline . no 207 .
srip14371 chr11 41831811 41831811 - L1-Ta germline . no 207 .
srip14772 chr11 48360753 48360753 - L1-Ta germline . no 207 .
srip17345 chr11 97434311 97434311 - L1-Ta germline . no 207 .
srip17441 chr11 99502903 99502903 + L1-Ta germline . no 207 CNTN5
srip17773 chr11 104556130 104556130 - L1-Ta germline . no 207 .
srip19330 chr11 134305648 134305648 - L1-Ta germline . no 207 .
srip20725 chr12 28226413 28226413 - L1-Ta germline . no 207 .
srip20874 chr12 31353751 31353751 - L1-pre-Ta germline . no 207 OVOS2
srip21911 chr12 42215623 42215623 - L1-Ta germline . no 207 .
srip22266 chr12 43256986 43256986 - L1-Ta germline . no 207 .
srip22823 chr12 48929052 48929052 + L1-Ta germline . no 207 .
srip24649 chr12 84965148 84965148 + L1-Ta germline . no 207 .
srip25146 chr12 95808527 95808527 - L1-Ta germline . no 207 .
srip25320 chr12 99925317 99925317 + L1-Ta germline . no 207 ANKS1B
srip26012 chr12 118186926 118186926 + L1-Ta germline . no 207 KSR2
srip26638 chr12 127585804 127585804 - L1-Ta germline . no 207 .
srip27018 chr13 22489805 22489805 + L1-Ta germline . no 207 .
srip27489 chr13 27488126 27488126 + L1-Ta germline . no 207 .
srip29058 chr13 61462336 61462336 - L1-Ta germline . no 207 .
srip29624 chr13 61734485 61734485 + L1-Ta germline . no 207 .
srip30393 chr13 72968682 72968682 + L1-Ta germline . no 207 .
srip31034 chr13 79259793 79259793 - L1-Ta germline . no 207 .
srip31439 chr13 85871602 85871602 - L1-Ta germline . no 207 .
srip33509 chr13 104296223 104296223 - L1-Ta germline . no 207 .
srip33666 chr13 104395943 104395943 - L1-Ta germline . no 207 .
srip33808 chr13 105280146 105280146 - L1-Ta germline . no 207 .
srip35259 chr14 28301261 28301261 + L1-Ta germline . no 207 .
srip35575 chr14 34140125 34140125 - L1-Ta germline . no 207 NPAS3
srip36300 chr14 39875084 39875084 + L1-Ta germline . no 207 FBXO33
srip37163 chr14 52667758 52667758 - L1-Ta germline . no 207 .
srip37624 chr14 62809583 62809583 + L1-Ta germline . no 207 .
srip38159 chr14 71197799 71197799 + L1-Ta germline . no 207 MAP3K9
srip38778 chr14 86952513 86952513 - L1-Ta germline . no 207 .
srip39333 chr15 28175791 28175791 - L1-Ta germline . no 207 OCA2
srip39512 chr15 34031839 34031839 - L1-Ta germline . no 207 RYR3
srip41723 chr15 62169638 62169638 - L1-Ta germline . no 207 VPS13C
srip42241 chr15 73774017 73774017 - L1-Ta germline . no 207 C15orf60
srip43410 chr15 100931161 100931161 - L1-Ta germline . no 207 .
srip43649 chr16 6793831 6793831 + L1-Ta germline . no 207 RBFOX1
srip44084 chr16 17755305 17755305 - L1-Ta germline . no 207 .
srip44786 chr16 32523893 32523893 - L1-Ta germline . no 207 .
srip45071 chr16 32525611 32525611 - L1-Ta germline . no 207 .
srip45886 chr16 61079188 61079188 + L1-Ta germline . no 207 .
srip47371 chr17 28398313 28398313 + L1-Ta germline . no 207 EFCAB5
srip47593 chr17 32813605 32813605 + L1-Ta germline . no 207 .
srip50013 chr18 49216219 49216219 - L1-Ta germline . no 207 .
srip50144 chr18 50097742 50097742 - L1-Ta germline . no 207 DCC
srip50726 chr18 51762730 51762730 - L1-Ta germline . no 207 .
srip51518 chr18 73290637 73290637 - L1-Ta germline . no 207 .
srip52192 chr19 27734292 27734292 - L1-Ta germline . no 207 .
srip54103 chr2 36381238 36381238 + L1-Ta germline . no 207 .
srip54607 chr2 42051403 42051403 + L1-Ta germline . no 207 .
srip54925 chr2 53460052 53460052 + L1-Ta germline . no 207 .
srip56250 chr2 82098043 82098043 + L1-Ta germline . no 207 .
srip56505 chr2 83188325 83188325 + L1-Ta germline . no 207 .
srip56672 chr2 92319790 92319790 - L1-Ta germline . no 207 .
srip57747 chr2 129573984 129573984 + L1-Ta germline . no 207 .
srip59610 chr2 156527822 156527822 + L1-Ta germline . no 207 .
srip59644 chr2 160318949 160318949 - L1-Ta germline . no 207 LOC100422294;BAZ2B
srip60146 chr2 178676245 178676245 - L1-Ta germline . no 207 PDE11A
srip62357 chr2 230341559 230341559 + L1-Ta germline . no 207 DNER
srip63446 chr20 16479495 16479495 - L1-Ta germline . no 207 KIF16B
srip64805 chr20 41952105 41952105 - L1-Ta germline . no 207 .
srip65338 chr20 60132832 60132832 - L1-Ta germline . no 207 CDH4
srip66043 chr21 19517313 19517313 - L1-Ta germline . no 207 .
srip66271 chr21 23626191 23626191 - L1-Ta germline . no 207 .
srip66556 chr21 26177912 26177912 - L1-Ta germline . no 207 .
srip66881 chr21 29069171 29069171 + L1-Ta germline . no 207 .
srip67450 chr22 22486369 22486369 - L1-Ta germline . no 207 IGL@
srip68905 chr22 44324605 44324605 - L1-Ta germline . no 207 PNPLA3
srip69647 chr3 656435 656435 - L1-Ta germline . no 207 .
srip70085 chr3 17409573 17409573 - L1-Ta germline . no 207 TBC1D5
srip70808 chr3 24987874 24987874 - L1-Ta germline . no 207 .
srip71173 chr3 26524464 26524464 - L1-Ta germline . no 207 .
srip72754 chr3 55788580 55788580 + L1-Ta germline . no 207 ERC2
srip73424 chr3 59852903 59852903 + L1-Ta germline . no 207 FHIT
srip73537 chr3 69181542 69181542 - L1-Ta germline . no 207 .
srip74434 chr3 80590163 80590163 - L1-Ta germline . no 207 .
srip74713 chr3 81990993 81990993 - L1-Ta germline . no 207 .
srip75913 chr3 89022346 89022346 - L1-Ta germline . no 207 .
srip76213 chr3 101279657 101279657 + L1-Ta germline . no 207 .
srip76449 chr3 105316337 105316337 + L1-Ta germline . no 207 .
srip76825 chr3 119046413 119046413 + L1-Ta germline . no 207 ARHGAP31
srip77615 chr3 133911300 133911300 + L1-Ta germline . no 207 RYK
srip78279 chr3 144610072 144610072 - L1-Ta germline . no 207 .
srip78615 chr3 151148544 151148544 - L1-Ta germline . no 207 MED12L
srip80411 chr3 176091333 176091333 + L1-Ta germline . no 207 .
srip80453 chr3 180091672 180091672 + L1-Ta germline . no 207 .
srip81533 chr3 186372141 186372141 + L1-Ta germline . no 207 .
srip81661 chr3 187835309 187835309 - L1-Ta germline . no 207 .
srip82137 chr3 193354175 193354175 - L1-Ta germline . no 207 OPA1
srip83360 chr4 20246382 20246382 + L1-Ta germline . no 207 .
srip84055 chr4 37952113 37952113 - L1-Ta germline . no 207 TBC1D1
srip84898 chr4 47007790 47007790 - L1-Ta germline . no 207 .
srip86208 chr4 66413932 66413932 + L1-Ta germline . no 207 EPHA5
srip86313 chr4 66809050 66809050 - L1-Ta germline . no 207 .
srip86358 chr4 66809078 66809078 - L1-Ta germline . no 207 .
srip86984 chr4 71093301 71093301 + L1-Ta germline . no 207 C4orf7
srip89026 chr4 104214686 104214686 + L1-Ta germline . no 207 .
srip90002 chr4 112628973 112628973 + L1-Ta germline . no 207 .
srip91302 chr4 130601435 130601435 - L1-Ta germline . no 207 .
srip92225 chr4 134596423 134596423 + L1-Ta germline . no 207 .
srip93126 chr4 147225296 147225296 + L1-Ta germline . no 207 SLC10A7
srip93749 chr4 157447970 157447970 + L1-Ta germline . no 207 .
srip94043 chr4 165231730 165231730 - L1-Ta germline . no 207 MARCH1
srip96061 chr5 8749515 8749515 + L1-Ta germline . no 207 .
srip96791 chr5 16883042 16883042 - L1-Ta germline . no 207 MYO10
srip96917 chr5 21207732 21207732 + L1-Ta germline . no 207 .
srip97972 chr5 33633348 33633348 - L1-Ta germline . no 207 ADAMTS12
srip98613 chr5 46396964 46396964 + L1-Ta germline . no 207 .
srip98638 chr5 49421077 49421077 - L1-Ta germline . no 207 .
srip99113 chr5 57279517 57279517 + L1-Ta germline . no 207 .
srip100785 chr5 89450781 89450781 + L1-Ta germline . no 207 .
srip101074 chr5 96866407 96866407 + L1-Ta germline . no 207 .
srip102268 chr5 109480258 109480258 - L1-Ta germline . no 207 .
srip102537 chr5 109567542 109567542 + L1-Ta germline . no 207 .
srip102744 chr5 112703081 112703081 + L1-Ta germline validated no 207 MCC
srip103769 chr5 137014775 137014775 - L1-Ta germline . no 207 KLHL3
srip104228 chr5 144331013 144331013 - L1-Ta germline . no 207 .
srip104321 chr5 147263413 147263413 - L1-Ta germline . no 207 .
srip104892 chr5 155333908 155333908 - L1-Ta germline . no 207 .
srip105244 chr5 155619865 155619865 + L1-Ta germline . no 207 .
srip105583 chr5 159351199 159351199 - L1-Ta germline . no 207 ADRA1B
srip107100 chr6 13191033 13191033 + L1-Ta germline . no 207 PHACTR1
srip107560 chr6 13503049 13503049 + L1-Ta germline . no 207 .
srip107596 chr6 16417684 16417684 - L1-Ta germline . no 207 ATXN1
srip107948 chr6 32457289 32457289 + L1-Ta germline . no 207 .
srip108014 chr6 32509106 32509106 - L1-Ta germline . no 207 .
srip108096 chr6 32613444 32613444 + L1-Ta germline . no 207 .
srip108283 chr6 45852697 45852697 - L1-Ta germline . no 207 .
srip108672 chr6 46310291 46310291 + L1-Ta germline . no 207 .
srip109190 chr6 61942547 61942547 - L1-Ta germline . no 207 .
srip109970 chr6 68112755 68112755 - L1-Ta germline . no 207 .
srip111088 chr6 77980650 77980650 - L1-Ta germline . no 207 .
srip111302 chr6 81293578 81293578 - L1-Ta germline . no 207 .
srip111339 chr6 83678129 83678129 - L1-Ta germline . no 207 UBE2CBP
srip112190 chr6 91669521 91669521 - L1-Ta germline . no 207 .
srip112798 chr6 102846086 102846086 - L1-Ta germline . no 207 .
srip113021 chr6 114091140 114091140 + L1-Ta germline . no 207 LOC100652953
srip113781 chr6 142450101 142450101 - L1-Ta germline . no 207 .
srip114738 chr6 148195789 148195789 + L1-Ta germline . no 207 .
srip114894 chr6 154215663 154215663 + L1-Ta germline . no 207 .
srip115087 chr6 157968737 157968737 - L1-Ta germline . no 207 ZDHHC14
srip115562 chr6 162181257 162181257 + L1-Ta germline . no 207 PARK2
srip116416 chr7 20170322 20170322 + L1-Ta germline . no 207 .
srip117494 chr7 52789472 52789472 + L1-Ta germline . no 207 .
srip117974 chr7 61778308 61778308 - L1-Ta germline . no 207 .
srip118876 chr7 70188676 70188676 - L1-Ta germline . no 207 AUTS2
srip119868 chr7 84901724 84901724 - L1-Ta germline . no 207 .
srip120236 chr7 85044737 85044737 + L1-Ta germline . no 207 .
srip121184 chr7 107410719 107410719 - L1-Ta germline . no 207 SLC26A3
srip121799 chr7 107829263 107829263 + L1-Ta germline . no 207 NRCAM
srip121991 chr7 108325661 108325661 + L1-Ta germline . no 207 .
srip123172 chr7 141480780 141480780 + L1-Ta germline . no 207 .
srip123807 chr8 3278042 3278042 - L1-Ta germline . no 207 CSMD1
srip124049 chr8 4452894 4452894 - L1-Ta germline . no 207 CSMD1
srip124567 chr8 5829283 5829283 - L1-Ta germline . no 207 .
srip125426 chr8 24926545 24926545 - L1-Ta germline . no 207 .
srip126931 chr8 67381885 67381885 - L1-Ta germline . no 207 .
srip126942 chr8 67758156 67758156 - L1-Ta germline . no 207 C8orf44-SGK3;SGK3
srip128249 chr8 87315040 87315040 + L1-Ta germline . no 207 .
srip128782 chr8 107557032 107557032 - L1-Ta germline . no 207 OXR1
srip130108 chr8 131041219 131041219 + L1-Ta germline . no 207 .
srip131146 chr9 6290494 6290494 + L1-Ta germline . no 207 .
srip131544 chr9 9236600 9236600 + L1-Ta germline . no 207 PTPRD
srip133457 chr9 32463894 32463894 - L1-Ta germline . no 207 DDX58
srip133690 chr9 35883708 35883708 + L1-Ta germline . no 207 .
srip134694 chr9 100675534 100675534 - L1-Ta germline . no 207 C9orf156
srip135047 chr9 105073654 105073654 + L1-Ta germline . no 207 .
srip135996 chr9 118083880 118083880 - L1-Ta germline . no 207 DEC1
srip136165 chr9 136105857 136105857 - L1-Ta germline . no 207 .
srip136179 chr9 138411456 138411456 + L1-Ta germline . no 207 .
srip137592 chrX 55585160 55585160 - L1-Ta germline . no 207 .
srip138342 chrX 66982754 66982754 - L1-Ta germline . no 207 .
srip138419 chrX 68696884 68696884 + L1-Ta germline . no 207 .
srip142177 chrX 154790189 154790189 + L1-Ta germline . no 207 TMLHE
srip142227 chrY 9951878 9951878 - L1-pre-Ta germline . no 207 .