euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

224 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip88 chr1 17229479 17229479 - L1-Ta germline . no 184 .
srip509 chr1 42483961 42483961 + L1-Ta germline . no 184 HIVEP3
srip1136 chr1 58815122 58815122 - L1-Ta germline . no 184 .
srip1926 chr1 75192907 75192907 - L1-Ta germline validated no 184 CRYZ
srip1993 chr1 81855783 81855783 + L1-Ta germline . no 184 .
srip3196 chr1 105028226 105028226 + L1-Ta germline . no 184 .
srip4032 chr1 149216797 149216797 + L1-Ta germline . no 184 .
srip5029 chr1 169524859 169524859 + L1-Ta germline . no 184 F5
srip5546 chr1 183969672 183969672 - L1-Ta germline . no 184 GLT25D2
srip5985 chr1 192262254 192262254 - L1-Ta germline . no 184 .
srip6008 chr1 192262268 192262268 - L1-Ta germline . no 184 .
srip6357 chr1 207579511 207579511 + L1-Ta germline . no 184 .
srip6926 chr1 221827821 221827821 - L1-Ta germline . no 184 .
srip7453 chr1 248454039 248454039 - L1-pre-Ta germline . no 184 .
srip7572 chr10 5061314 5061314 - L1-Ta germline . no 184 .
srip8175 chr10 23842058 23842058 - L1-Ta germline . no 184 .
srip8196 chr10 25576935 25576935 - L1-Ta germline . no 184 GPR158
srip8414 chr10 25707687 25707687 - L1-Ta germline . no 184 GPR158
srip8643 chr10 27775762 27775762 + L1-Ta germline . no 184 .
srip9676 chr10 74767506 74767506 - L1-Ta germline . no 184 P4HA1
srip11200 chr10 110453470 110453470 + L1-Ta germline . no 184 .
srip11898 chr10 126983631 126983631 - L1-Ta germline . no 184 .
srip12241 chr11 6812383 6812383 + L1-Ta germline . no 184 .
srip13783 chr11 33670123 33670123 + L1-Ta germline . no 184 C11orf41
srip13851 chr11 36558472 36558472 - L1-Ta germline . no 184 .
srip14352 chr11 41831811 41831811 - L1-Ta germline . no 184 .
srip14557 chr11 43356955 43356955 + L1-Ta germline . no 184 API5
srip14750 chr11 48360753 48360753 - L1-Ta germline . no 184 .
srip15073 chr11 51525354 51525354 - L1-Ta germline . no 184 .
srip15144 chr11 55870759 55870759 + L1-Ta germline . no 184 .
srip15348 chr11 58171838 58171838 + L1-Ta germline . no 184 .
srip16517 chr11 83652350 83652350 - L1-Ta germline . no 184 DLG2
srip18124 chr11 110567773 110567773 + L1-Ta germline . no 184 ARHGAP20
srip18647 chr11 132398113 132398113 - L1-Ta germline . no 184 OPCML
srip19308 chr11 134305648 134305648 - L1-Ta germline . no 184 .
srip19659 chr12 8105629 8105629 + L1-Ta germline . no 184 .
srip20869 chr12 31353751 31353751 - L1-pre-Ta germline . no 184 OVOS2
srip21155 chr12 34017325 34017325 - L1-Ta germline . no 184 .
srip22249 chr12 43256986 43256986 - L1-Ta germline . no 184 .
srip22490 chr12 44542592 44542592 + L1-Ta germline . no 184 TMEM117
srip24421 chr12 84955216 84955216 - L1-Ta germline . no 184 .
srip25123 chr12 95808527 95808527 - L1-Ta germline . no 184 .
srip25635 chr12 117814447 117814447 - L1-Ta germline . no 184 .
srip25996 chr12 118186926 118186926 + L1-Ta germline . no 184 KSR2
srip27005 chr13 22489805 22489805 + L1-Ta germline . no 184 .
srip27478 chr13 27488126 27488126 + L1-Ta germline . no 184 .
srip28011 chr13 42771403 42771403 + L1-Ta germline . no 184 DGKH
srip28164 chr13 48856541 48856541 + L1-Ta germline . no 184 .
srip29613 chr13 61734485 61734485 + L1-Ta germline . no 184 .
srip29755 chr13 64569855 64569855 - L1-Ta germline . no 184 .
srip31011 chr13 79259793 79259793 - L1-Ta germline . no 184 .
srip31419 chr13 85871602 85871602 - L1-Ta germline . no 184 .
srip32009 chr13 86340153 86340153 - L1-Ta germline . no 184 .
srip32301 chr13 91149409 91149409 - L1-Ta germline . no 184 .
srip33486 chr13 104296223 104296223 - L1-Ta germline . no 184 .
srip33643 chr13 104395943 104395943 - L1-Ta germline . no 184 .
srip33785 chr13 105280146 105280146 - L1-Ta germline . no 184 .
srip34277 chr14 19000969 19000969 + L1-Ta germline . no 184 .
srip35456 chr14 31150809 31150809 - L1-Ta germline . no 184 SCFD1
srip36022 chr14 36674760 36674760 + L1-Ta germline . no 184 .
srip37143 chr14 52667758 52667758 - L1-Ta germline . no 184 .
srip37852 chr14 67419863 67419863 - L1-Ta germline . no 184 GPHN
srip38291 chr14 72333719 72333719 - L1-Ta germline . no 184 .
srip38604 chr14 86381796 86381796 - L1-Ta germline . no 184 .
srip41242 chr15 56251153 56251153 + L1-Ta germline . no 184 NEDD4
srip43047 chr15 98622504 98622504 + L1-Ta germline . no 184 .
srip43392 chr15 100931161 100931161 - L1-Ta germline . no 184 .
srip43638 chr16 6793831 6793831 + L1-Ta germline . no 184 RBFOX1
srip45048 chr16 32525611 32525611 - L1-Ta germline . no 184 .
srip45474 chr16 33992430 33992430 + L1-Ta germline . no 184 .
srip45863 chr16 61079188 61079188 + L1-Ta germline . no 184 .
srip46549 chr17 6341644 6341644 - L1-Ta germline . no 184 .
srip47350 chr17 28398313 28398313 + L1-Ta germline . no 184 EFCAB5
srip47582 chr17 32813605 32813605 + L1-Ta germline . no 184 .
srip48437 chr17 68357409 68357409 + L1-Ta germline . no 184 .
srip49223 chr18 27219200 27219200 - L1-Ta germline . no 184 .
srip50341 chr18 51425726 51425726 - L1-Ta germline . no 184 .
srip50712 chr18 51762730 51762730 - L1-Ta germline . no 184 .
srip51004 chr18 59579975 59579975 + L1-Ta germline . no 184 .
srip51179 chr18 62947200 62947200 - L1-Ta germline . no 184 .
srip51818 chr18 74960068 74960068 - L1-Ta germline . no 184 .
srip52806 chr2 7050603 7050603 + L1-Ta germline . no 184 .
srip53108 chr2 21288218 21288218 + L1-Ta germline . no 184 .
srip53721 chr2 29759205 29759205 - L1-Ta germline validated no 184 ALK
srip54590 chr2 42051403 42051403 + L1-Ta germline . no 184 .
srip54651 chr2 42051416 42051416 + L1-Ta germline . no 184 .
srip54912 chr2 53460052 53460052 + L1-Ta germline . no 184 .
srip55225 chr2 68049223 68049223 - L1-Ta germline . no 184 .
srip55298 chr2 69168896 69168896 - L1-Ta germline . no 184 .
srip55806 chr2 79929388 79929388 + L1-Ta germline . no 184 CTNNA2
srip56237 chr2 82098043 82098043 + L1-Ta germline . no 184 .
srip56496 chr2 83188325 83188325 + L1-Ta germline . no 184 .
srip56612 chr2 92291306 92291306 - L1-Ta germline . no 184 .
srip56959 chr2 108133313 108133313 + L1-Ta germline . no 184 .
srip57292 chr2 114826303 114826303 + L1-Ta germline . no 184 .
srip57660 chr2 129372166 129372166 + L1-Ta germline . no 184 .
srip57806 chr2 132868182 132868182 - L1-Ta germline . no 184 .
srip58204 chr2 141852908 141852908 - L1-Ta germline . no 184 LRP1B
srip58573 chr2 144010793 144010793 + L1-Ta germline . no 184 ARHGAP15
srip59661 chr2 162748906 162748906 - L1-Ta germline . no 184 SLC4A10
srip59850 chr2 170504673 170504673 + L1-Ta germline . no 184 C2orf77
srip60486 chr2 181000540 181000540 + L1-Ta germline . no 184 .
srip61241 chr2 201638085 201638085 + L1-Ta germline . no 184 AOX2P
srip63642 chr20 17860937 17860937 + L1-Ta germline . no 184 .
srip64790 chr20 41952105 41952105 - L1-Ta germline . no 184 .
srip66024 chr21 19517313 19517313 - L1-Ta germline . no 184 .
srip66254 chr21 23626191 23626191 - L1-Ta germline . no 184 .
srip66860 chr21 29069171 29069171 + L1-Ta germline . no 184 .
srip69632 chr3 656435 656435 - L1-Ta germline . no 184 .
srip70062 chr3 17409573 17409573 - L1-Ta germline . no 184 TBC1D5
srip71156 chr3 26524464 26524464 - L1-Ta germline . no 184 .
srip71918 chr3 38626082 38626082 + L1-Ta germline . no 184 SCN5A
srip73405 chr3 59852903 59852903 + L1-Ta germline . no 184 FHIT
srip74072 chr3 79605276 79605276 - L1-Ta germline . no 184 ROBO1
srip74425 chr3 80590163 80590163 - L1-Ta germline . no 184 .
srip75605 chr3 85576568 85576568 + L1-Ta germline . no 184 CADM2
srip75830 chr3 86264950 86264950 - L1-Ta germline . no 184 .
srip75918 chr3 89394023 89394023 + L1-Ta germline . no 184 EPHA3
srip76040 chr3 97329539 97329539 + L1-Ta germline . no 184 EPHA6
srip76809 chr3 119046413 119046413 + L1-Ta germline . no 184 ARHGAP31
srip77271 chr3 123590726 123590726 + L1-Ta germline . no 184 MYLK
srip78143 chr3 143121759 143121759 - L1-Ta germline . no 184 SLC9A9
srip78592 chr3 151148544 151148544 - L1-Ta germline . no 184 MED12L
srip78846 chr3 151688088 151688088 - L1-Ta germline . no 184 .
srip79320 chr3 162717306 162717306 + L1-Ta germline . no 184 .
srip79882 chr3 169269964 169269964 + L1-Ta germline . no 184 MECOM
srip79941 chr3 172749118 172749118 - L1-Ta germline . no 184 SPATA16
srip80388 chr3 176091333 176091333 + L1-Ta germline . no 184 .
srip81513 chr3 186372141 186372141 + L1-Ta germline . no 184 .
srip81638 chr3 187835309 187835309 - L1-Ta germline . no 184 .
srip82133 chr3 193354175 193354175 - L1-Ta germline . no 184 OPA1
srip82590 chr4 14849038 14849038 + L1-Ta germline . no 184 .
srip83337 chr4 20246382 20246382 + L1-Ta germline . no 184 .
srip84878 chr4 47007790 47007790 - L1-Ta germline . no 184 .
srip85446 chr4 57497067 57497067 - L1-Ta germline . no 184 .
srip85988 chr4 61330106 61330106 + L1-Ta germline . no 184 .
srip86191 chr4 66413932 66413932 + L1-Ta germline . no 184 EPHA5
srip86612 chr4 69572737 69572737 - L1-Ta germline . no 184 LOC728811
srip87820 chr4 85317459 85317459 - L1-Ta germline . no 184 .
srip87834 chr4 85317475 85317475 - L1-Ta germline . no 184 .
srip88130 chr4 95906372 95906372 + L1-Ta germline . no 184 BMPR1B
srip88820 chr4 103343746 103343746 + L1-Ta germline . no 184 .
srip89475 chr4 107938877 107938877 + L1-Ta germline . no 184 DKK2
srip89989 chr4 112628973 112628973 + L1-Ta germline . no 184 .
srip90291 chr4 115132695 115132695 + L1-Ta germline . no 184 .
srip90866 chr4 121291556 121291556 - L1-Ta germline . no 184 .
srip92767 chr4 138177325 138177325 + L1-Ta germline . no 184 .
srip93103 chr4 147225296 147225296 + L1-Ta germline . no 184 SLC10A7
srip93377 chr4 152732810 152732810 - L1-Ta germline . no 184 .
srip93719 chr4 154595629 154595629 - L1-Ta germline . no 184 .
srip94421 chr4 169626245 169626245 - L1-Ta germline . no 184 PALLD
srip95468 chr5 1645773 1645773 + L1-Ta germline . no 184 .
srip96380 chr5 12133255 12133255 + L1-Ta germline . no 184 .
srip97050 chr5 24778761 24778761 - L1-Ta germline . no 184 .
srip97949 chr5 33633348 33633348 - L1-Ta germline . no 184 ADAMTS12
srip98292 chr5 40041336 40041336 - L1-Ta germline . no 184 .
srip98597 chr5 46396964 46396964 + L1-Ta germline . no 184 .
srip99488 chr5 68263461 68263461 - L1-Ta germline . no 184 .
srip99715 chr5 79108566 79108566 - L1-Ta germline . no 184 .
srip100077 chr5 84239673 84239673 - L1-Ta germline . no 184 .
srip100762 chr5 89450781 89450781 + L1-Ta germline . no 184 .
srip102248 chr5 109480258 109480258 - L1-Ta germline . no 184 .
srip102523 chr5 109567542 109567542 + L1-Ta germline . no 184 .
srip104227 chr5 144331013 144331013 - L1-Ta germline . no 184 .
srip104302 chr5 145009355 145009355 + L1-Ta germline . no 184 .
srip104834 chr5 154873933 154873933 - L1-Ta germline . no 184 .
srip105226 chr5 155619865 155619865 + L1-Ta germline . no 184 .
srip105570 chr5 159351199 159351199 - L1-Ta germline . no 184 ADRA1B
srip105722 chr5 160435665 160435665 - L1-Ta germline . no 184 .
srip107080 chr6 13191033 13191033 + L1-Ta germline . no 184 PHACTR1
srip107541 chr6 13503049 13503049 + L1-Ta germline . no 184 .
srip108268 chr6 45852697 45852697 - L1-Ta germline . no 184 .
srip109181 chr6 61942547 61942547 - L1-Ta germline . no 184 .
srip109947 chr6 68112755 68112755 - L1-Ta germline . no 184 .
srip111070 chr6 77980650 77980650 - L1-Ta germline . no 184 .
srip112173 chr6 91669521 91669521 - L1-Ta germline . no 184 .
srip113012 chr6 114091140 114091140 + L1-Ta germline . no 184 LOC100652953
srip114725 chr6 148195789 148195789 + L1-Ta germline . no 184 .
srip114871 chr6 154215663 154215663 + L1-Ta germline . no 184 .
srip114951 chr6 156362482 156362482 + L1-Ta germline . no 184 .
srip115068 chr6 157968737 157968737 - L1-Ta germline . no 184 ZDHHC14
srip116174 chr7 8886715 8886715 + L1-Ta germline . no 184 .
srip116879 chr7 41310786 41310786 - L1-Ta germline . no 184 .
srip117476 chr7 52789472 52789472 + L1-Ta germline . no 184 .
srip117703 chr7 55383721 55383721 - L1-Ta germline . no 184 .
srip117958 chr7 61778308 61778308 - L1-Ta germline . no 184 .
srip118181 chr7 62492930 62492930 + L1-Ta germline . no 184 .
srip119847 chr7 84901724 84901724 - L1-Ta germline . no 184 .
srip121177 chr7 107410719 107410719 - L1-Ta germline . no 184 SLC26A3
srip121781 chr7 107829263 107829263 + L1-Ta germline . no 184 NRCAM
srip122456 chr7 112789623 112789623 - L1-Ta germline . no 184 .
srip124034 chr8 4452894 4452894 - L1-Ta germline . no 184 CSMD1
srip124548 chr8 5829283 5829283 - L1-Ta germline . no 184 .
srip125412 chr8 24926545 24926545 - L1-Ta germline . no 184 .
srip126910 chr8 67381885 67381885 - L1-Ta germline . no 184 .
srip127319 chr8 72399221 72399221 - L1-Ta germline . no 184 .
srip128185 chr8 85428622 85428622 + L1-Ta germline . no 184 RALYL
srip128230 chr8 87315040 87315040 + L1-Ta germline . no 184 .
srip128763 chr8 107557032 107557032 - L1-Ta germline . no 184 OXR1
srip129012 chr8 115773126 115773126 + L1-Ta germline . no 184 .
srip130099 chr8 131041219 131041219 + L1-Ta germline . no 184 .
srip130279 chr8 133079218 133079218 - L1-Ta germline . no 184 HHLA1
srip130347 chr8 134972242 134972242 + L1-pre-Ta germline . no 184 .
srip130727 chr9 5491418 5491418 + L1-Ta germline . no 184 .
srip131127 chr9 6290494 6290494 + L1-Ta germline . no 184 .
srip132400 chr9 30495887 30495887 - L1-Ta germline . no 184 .
srip132621 chr9 30674468 30674468 - L1-Ta germline . no 184 .
srip133434 chr9 32463894 32463894 - L1-Ta germline . no 184 DDX58
srip133667 chr9 35883708 35883708 + L1-Ta germline . no 184 .
srip134679 chr9 100675534 100675534 - L1-Ta germline . no 184 C9orf156
srip135039 chr9 105073654 105073654 + L1-Ta germline . no 184 .
srip135978 chr9 118083880 118083880 - L1-Ta germline . no 184 DEC1
srip136154 chr9 136105857 136105857 - L1-Ta germline . no 184 .
srip136175 chr9 138411456 138411456 + L1-Ta germline . no 184 .
srip136286 chrX 4659603 4659603 - L1-Ta germline . no 184 .
srip136386 chrX 11953500 11953500 + L1-Ta germline . yes 184 .
srip137339 chrX 55264652 55264652 - L1-Ta germline . no 184 .
srip137585 chrX 55585160 55585160 - L1-Ta germline . no 184 .
srip138332 chrX 66982754 66982754 - L1-Ta germline . no 184 .
srip140072 chrX 102363174 102363174 + L1-Ta germline . no 184 .
srip140530 chrX 116025284 116025284 + L1-Ta germline . no 184 .
srip141392 chrX 129525281 129525281 - L1-Ta germline . no 184 .
srip142167 chrX 154790189 154790189 + L1-Ta germline . no 184 TMLHE
srip142311 chrY 13653796 13653796 - L1-Ta germline . no 184 .