euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

187 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip85 chr1 17229479 17229479 - L1-Ta germline . no 177 .
srip504 chr1 42483961 42483961 + L1-Ta germline . no 177 HIVEP3
srip838 chr1 56405398 56405398 - L1-Ta germline . no 177 LOC100507652
srip1986 chr1 81855783 81855783 + L1-Ta germline . no 177 .
srip3066 chr1 102568923 102568923 + L1-Ta germline . no 177 .
srip5541 chr1 183969672 183969672 - L1-Ta germline . no 177 GLT25D2
srip6350 chr1 207579511 207579511 + L1-Ta germline . no 177 .
srip6924 chr1 221827821 221827821 - L1-Ta germline . no 177 .
srip7396 chr1 242311577 242311577 + L1-Ta germline validated no 177 PLD5
srip8407 chr10 25707687 25707687 - L1-Ta germline . no 177 GPR158
srip8638 chr10 27775762 27775762 + L1-Ta germline . no 177 .
srip9669 chr10 74767506 74767506 - L1-Ta germline . no 177 P4HA1
srip11194 chr10 110453470 110453470 + L1-Ta germline . no 177 .
srip11848 chr10 124455231 124455231 + L1-Ta germline . no 177 .
srip13776 chr11 33670123 33670123 + L1-Ta germline . no 177 C11orf41
srip14345 chr11 41831811 41831811 - L1-Ta germline . no 177 .
srip14743 chr11 48360753 48360753 - L1-Ta germline . no 177 .
srip15141 chr11 55870759 55870759 + L1-Ta germline . no 177 .
srip15343 chr11 58171838 58171838 + L1-Ta germline . no 177 .
srip17198 chr11 94684368 94684368 + L1-Ta germline . no 177 .
srip17753 chr11 104556130 104556130 - L1-Ta germline . no 177 .
srip18276 chr11 114895524 114895524 + L1-Ta germline . no 177 .
srip19301 chr11 134305648 134305648 - L1-Ta germline . no 177 .
srip19656 chr12 8105629 8105629 + L1-Ta germline . no 177 .
srip20154 chr12 12933694 12933694 - L1-Ta germline . no 177 APOLD1
srip21152 chr12 34017325 34017325 - L1-Ta germline . no 177 .
srip22243 chr12 43256986 43256986 - L1-Ta germline . no 177 .
srip22962 chr12 55782238 55782238 + L1-Ta germline . no 177 OR6C66P
srip25116 chr12 95808527 95808527 - L1-Ta germline . no 177 .
srip25247 chr12 98669929 98669929 + L1-Ta germline . no 177 .
srip25630 chr12 117814447 117814447 - L1-Ta germline . no 177 .
srip26749 chr13 21514971 21514971 - L1-Ta germline . no 177 .
srip28008 chr13 42771403 42771403 + L1-Ta germline . no 177 DGKH
srip28161 chr13 48856541 48856541 + L1-Ta germline . no 177 .
srip29607 chr13 61734485 61734485 + L1-Ta germline . no 177 .
srip31004 chr13 79259793 79259793 - L1-Ta germline . no 177 .
srip31412 chr13 85871602 85871602 - L1-Ta germline . no 177 .
srip32002 chr13 86340153 86340153 - L1-Ta germline . no 177 .
srip33479 chr13 104296223 104296223 - L1-Ta germline . no 177 .
srip33636 chr13 104395943 104395943 - L1-Ta germline . no 177 .
srip33778 chr13 105280146 105280146 - L1-Ta germline . no 177 .
srip35235 chr14 28301261 28301261 + L1-Ta germline . no 177 .
srip35453 chr14 31150809 31150809 - L1-Ta germline . no 177 SCFD1
srip36017 chr14 36674760 36674760 + L1-Ta germline . no 177 .
srip36294 chr14 39875084 39875084 + L1-Ta germline . no 177 FBXO33
srip37136 chr14 52667758 52667758 - L1-Ta germline . no 177 .
srip37353 chr14 59220402 59220402 + L1-Ta germline . no 177 .
srip37845 chr14 67419863 67419863 - L1-Ta germline . no 177 GPHN
srip38146 chr14 71197799 71197799 + L1-Ta germline . no 177 MAP3K9
srip38599 chr14 86381796 86381796 - L1-Ta germline . no 177 .
srip39324 chr15 28175791 28175791 - L1-Ta germline . no 177 OCA2
srip39746 chr15 37707890 37707890 - L1-Ta germline . no 177 .
srip40202 chr15 47507329 47507329 - L1-Ta germline . no 177 SEMA6D
srip41239 chr15 56251153 56251153 + L1-Ta germline . no 177 NEDD4
srip41691 chr15 62064901 62064901 + L1-Ta germline . no 177 .
srip43385 chr15 100931161 100931161 - L1-Ta germline . no 177 .
srip43633 chr16 6793831 6793831 + L1-Ta germline . no 177 RBFOX1
srip44761 chr16 32523893 32523893 - L1-Ta germline . no 177 .
srip45041 chr16 32525611 32525611 - L1-Ta germline . no 177 .
srip45467 chr16 33992430 33992430 + L1-Ta germline . no 177 .
srip45856 chr16 61079188 61079188 + L1-Ta germline . no 177 .
srip46545 chr17 6341644 6341644 - L1-Ta germline . no 177 .
srip47345 chr17 28398313 28398313 + L1-Ta germline . no 177 EFCAB5
srip48434 chr17 68357409 68357409 + L1-Ta germline . no 177 .
srip49431 chr18 28732902 28732902 - L1-Ta germline . no 177 DSC1
srip50400 chr18 51488332 51488332 - L1-Ta germline . no 177 .
srip51667 chr18 74515287 74515287 - L1-Ta germline . no 177 LOC100131655
srip52763 chr2 6798288 6798288 - L1-Ta germline . no 177 .
srip52803 chr2 7050603 7050603 + L1-Ta germline . no 177 .
srip53732 chr2 33092073 33092073 - L1-Ta germline . no 177 LINC00486
srip54098 chr2 36381238 36381238 + L1-Ta germline . no 177 .
srip54214 chr2 36570243 36570243 - L1-Ta germline . no 177 .
srip54584 chr2 42051403 42051403 + L1-Ta germline . no 177 .
srip54649 chr2 42051416 42051416 + L1-Ta germline . no 177 .
srip56232 chr2 82098043 82098043 + L1-Ta germline . no 177 .
srip57904 chr2 137426142 137426142 - L1-Ta germline . no 177 .
srip58201 chr2 141852908 141852908 - L1-Ta germline . no 177 LRP1B
srip60796 chr2 191478714 191478714 - L1-Ta germline . no 177 .
srip61605 chr2 212707181 212707181 + L1-Ta germline . no 177 ERBB4
srip62609 chr2 235519794 235519794 + L1-Ta germline . no 177 .
srip63085 chr20 7292200 7292200 + L1-Ta germline . no 177 .
srip63438 chr20 16479495 16479495 - L1-Ta germline . no 177 KIF16B
srip63999 chr20 25844027 25844027 + L1-Ta germline . no 177 .
srip64787 chr20 41952105 41952105 - L1-Ta germline . no 177 .
srip66021 chr21 19517313 19517313 - L1-Ta germline . no 177 .
srip66853 chr21 29069171 29069171 + L1-Ta germline . no 177 .
srip67899 chr22 28455902 28455902 - L1-Ta germline . no 177 TTC28
srip70055 chr3 17409573 17409573 - L1-Ta germline . no 177 TBC1D5
srip70443 chr3 20748896 20748896 - L1-Ta germline . no 177 .
srip70796 chr3 24987874 24987874 - L1-Ta germline . no 177 .
srip72736 chr3 55788580 55788580 + L1-Ta germline . no 177 ERC2
srip75600 chr3 85576568 85576568 + L1-Ta germline . no 177 CADM2
srip75894 chr3 89022346 89022346 - L1-Ta germline . no 177 .
srip76430 chr3 105316337 105316337 + L1-Ta germline . no 177 .
srip76611 chr3 109751770 109751770 + L1-Ta germline . no 177 .
srip76803 chr3 119046413 119046413 + L1-Ta germline . no 177 ARHGAP31
srip77267 chr3 123590726 123590726 + L1-Ta germline . no 177 MYLK
srip78585 chr3 151148544 151148544 - L1-Ta germline . no 177 MED12L
srip79315 chr3 162717306 162717306 + L1-Ta germline . no 177 .
srip80216 chr3 175677970 175677970 - L1-Ta germline . no 177 .
srip80381 chr3 176091333 176091333 + L1-Ta germline . no 177 .
srip80443 chr3 180091672 180091672 + L1-Ta germline . no 177 .
srip81506 chr3 186372141 186372141 + L1-Ta germline . no 177 .
srip81631 chr3 187835309 187835309 - L1-Ta germline . no 177 .
srip83330 chr4 20246382 20246382 + L1-Ta germline . no 177 .
srip83873 chr4 29480708 29480708 - L1-Ta germline . no 177 .
srip84871 chr4 47007790 47007790 - L1-Ta germline . no 177 .
srip86187 chr4 66413932 66413932 + L1-Ta germline . no 177 EPHA5
srip88815 chr4 103343746 103343746 + L1-Ta germline . no 177 .
srip89589 chr4 110248316 110248316 - L1-Ta germline . no 177 .
srip89662 chr4 110248332 110248332 - L1-Ta germline . no 177 .
srip90284 chr4 115132695 115132695 + L1-Ta germline . no 177 .
srip92211 chr4 134596423 134596423 + L1-Ta germline . no 177 .
srip92760 chr4 138177325 138177325 + L1-Ta germline . no 177 .
srip93097 chr4 147225296 147225296 + L1-Ta germline . no 177 SLC10A7
srip95363 chr4 190659695 190659695 + L1-Ta germline . no 177 .
srip95465 chr5 1645773 1645773 + L1-Ta germline . no 177 .
srip96042 chr5 8749515 8749515 + L1-Ta germline . no 177 .
srip96353 chr5 11391276 11391276 + L1-Ta germline . no 177 CTNND2
srip96379 chr5 12133255 12133255 + L1-Ta germline . no 177 .
srip96450 chr5 14079084 14079084 + L1-Ta germline . no 177 .
srip96901 chr5 21207732 21207732 + L1-Ta germline . no 177 .
srip97942 chr5 33633348 33633348 - L1-Ta germline . no 177 ADAMTS12
srip98287 chr5 40041336 40041336 - L1-Ta germline . no 177 .
srip98309 chr5 41428535 41428535 + L1-Ta germline . no 177 PLCXD3
srip98351 chr5 41602028 41602028 + L1-Ta germline . no 177 .
srip98591 chr5 46396964 46396964 + L1-Ta germline . no 177 .
srip99485 chr5 68263461 68263461 - L1-Ta germline . no 177 .
srip100072 chr5 84239673 84239673 - L1-Ta germline . no 177 .
srip100755 chr5 89450781 89450781 + L1-Ta germline . no 177 .
srip101692 chr5 105935373 105935373 + L1-Ta germline . no 177 .
srip102241 chr5 109480258 109480258 - L1-Ta germline . no 177 .
srip102518 chr5 109567542 109567542 + L1-Ta germline . no 177 .
srip102993 chr5 124155349 124155349 - L1-Ta germline . no 177 .
srip103368 chr5 125040045 125040045 + L1-Ta germline . no 177 .
srip103756 chr5 137014775 137014775 - L1-Ta germline . no 177 KLHL3
srip104829 chr5 154873933 154873933 - L1-Ta germline . no 177 .
srip105565 chr5 159351199 159351199 - L1-Ta germline . no 177 ADRA1B
srip105781 chr5 162819864 162819864 + L1-Ta germline . no 177 .
srip106659 chr6 5558289 5558289 + L1-Ta germline . no 177 FARS2
srip107076 chr6 13191033 13191033 + L1-Ta germline . no 177 PHACTR1
srip107536 chr6 13503049 13503049 + L1-Ta germline . no 177 .
srip107940 chr6 32457289 32457289 + L1-Ta germline . no 177 .
srip108007 chr6 32509106 32509106 - L1-Ta germline . no 177 .
srip108067 chr6 32589567 32589567 + L1-Ta germline . no 177 .
srip109940 chr6 68112755 68112755 - L1-Ta germline . no 177 .
srip110105 chr6 69198745 69198745 - L1-Ta germline . no 177 .
srip111064 chr6 77980650 77980650 - L1-Ta germline . no 177 .
srip111203 chr6 78649689 78649689 - L1-Ta germline . no 177 .
srip112168 chr6 91669521 91669521 - L1-Ta germline . no 177 .
srip112283 chr6 91767655 91767655 + L1-Ta germline . no 177 .
srip112415 chr6 102215188 102215188 + L1-Ta germline . no 177 GRIK2
srip113756 chr6 142450101 142450101 - L1-Ta germline . no 177 .
srip114440 chr6 148163587 148163587 + L1-Ta germline . no 177 .
srip114864 chr6 154215663 154215663 + L1-Ta germline . no 177 .
srip115061 chr6 157968737 157968737 - L1-Ta germline . no 177 ZDHHC14
srip115546 chr6 162181257 162181257 + L1-Ta germline . no 177 PARK2
srip116249 chr7 12725153 12725153 + L1-Ta germline . no 177 .
srip118866 chr7 70188676 70188676 - L1-Ta germline . no 177 AUTS2
srip119842 chr7 84901724 84901724 - L1-Ta germline . no 177 .
srip121774 chr7 107829263 107829263 + L1-Ta germline . no 177 NRCAM
srip121985 chr7 108325661 108325661 + L1-Ta germline . no 177 .
srip122239 chr7 110484749 110484749 + L1-Ta germline . no 177 IMMP2L
srip122593 chr7 119446561 119446561 - L1-Ta germline . no 177 .
srip124029 chr8 4452894 4452894 - L1-Ta germline . no 177 CSMD1
srip125046 chr8 21496230 21496230 + L1-Ta germline . no 177 .
srip126903 chr8 67381885 67381885 - L1-Ta germline . no 177 .
srip126937 chr8 67758156 67758156 - L1-Ta germline . no 177 C8orf44-SGK3;SGK3
srip127316 chr8 72399221 72399221 - L1-Ta germline . no 177 .
srip128225 chr8 87315040 87315040 + L1-Ta germline . no 177 .
srip128756 chr8 107557032 107557032 - L1-Ta germline . no 177 OXR1
srip128843 chr8 111632621 111632621 + L1-Ta germline . no 177 .
srip131122 chr9 6290494 6290494 + L1-Ta germline . no 177 .
srip131379 chr9 7741406 7741406 + L1-Ta germline . no 177 .
srip133427 chr9 32463894 32463894 - L1-Ta germline . no 177 DDX58
srip133660 chr9 35883708 35883708 + L1-Ta germline . no 177 .
srip133702 chr9 35883754 35883754 + L1-Ta germline . no 177 .
srip133948 chr9 72777411 72777411 - L1-Ta germline . no 177 LOC100507244;MAMDC2
srip134674 chr9 100675534 100675534 - L1-Ta germline . no 177 C9orf156
srip135035 chr9 105073654 105073654 + L1-Ta germline . no 177 .
srip135198 chr9 105389585 105389585 - L1-Ta germline . no 177 .
srip135975 chr9 118083880 118083880 - L1-Ta germline . no 177 DEC1
srip136768 chrX 24384651 24384651 - L1-Ta germline . no 177 .
srip138327 chrX 66982754 66982754 - L1-Ta germline . no 177 .
srip140069 chrX 102363174 102363174 + L1-Ta germline . no 177 .
srip141466 chrX 130495439 130495439 - L1-Ta germline . no 177 .
srip142210 chrY 9951878 9951878 - L1-pre-Ta germline . no 177 .