euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

220 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip926 chr1 56834937 56834937 + L1-Ta germline . yes 690 .
srip1666 chr1 74984526 74984526 - L1-Ta germline . no 690 FPGT-TNNI3K;TNNI3K
srip2173 chr1 86398798 86398798 + L1-Ta germline . no 690 COL24A1
srip2261 chr1 87144762 87144762 - L1-Ta germline . no 690 .
srip2608 chr1 99678977 99678977 - L1-Ta germline . no 690 .
srip2664 chr1 99854086 99854086 - L1-Ta germline . no 690 .
srip3108 chr1 102697069 102697069 + L1-Ta germline . no 690 .
srip3266 chr1 105386449 105386449 - L1-Ta germline . no 690 .
srip3994 chr1 121478354 121478354 + L1-Ta germline . yes 690 .
srip4108 chr1 149308424 149308424 + L1-Ta germline . no 690 LOC645262
srip4205 chr1 152462236 152462236 - L1-Ta germline . no 690 .
srip4310 chr1 158238664 158238664 + L1-Ta germline . yes 690 .
srip4583 chr1 163231881 163231881 - L1-Ta germline . no 690 LOC100505773
srip4755 chr1 165553147 165553147 - L1-Ta germline . no 690 .
srip4813 chr1 165940104 165940104 - L1-Ta germline . yes 690 .
srip4851 chr1 166212290 166212290 - L1-Ta germline . yes 690 .
srip6156 chr1 193836827 193836827 + L1-Ta germline . yes 690 .
srip7064 chr1 228058514 228058514 - L1-Ta germline . yes 690 .
srip7624 chr10 5293335 5293335 + L1-Ta germline . yes 690 .
srip7932 chr10 19216651 19216651 + L1-Ta germline . no 690 .
srip8732 chr10 32929792 32929792 - L1-Ta germline . no 690 C10orf68
srip8992 chr10 58863547 58863547 - L1-Ta germline . no 690 .
srip9722 chr10 78351510 78351510 + L1-Ta germline . yes 690 .
srip10800 chr10 107137008 107137008 - L1-Ta germline . no 690 .
srip11310 chr10 110846814 110846814 + L1-Ta germline . yes 690 .
srip11965 chr10 131468408 131468408 - L1-Ta germline . no 690 MGMT
srip12535 chr11 15380245 15380245 + L1-Ta germline . no 690 .
srip12632 chr11 15995864 15995864 - L1-Ta germline . no 690 SOX6
srip12719 chr11 24355519 24355519 + L1-Ta germline . yes 690 .
srip13681 chr11 33670122 33670122 + L1-Ta germline validated no 690 C11orf41
srip15540 chr11 59815986 59815986 - L1-Ta germline . no 690 .
srip17237 chr11 94684419 94684419 + L1-Ta germline . no 690 .
srip17418 chr11 99478828 99478828 + L1-Ta germline . yes 690 CNTN5
srip20317 chr12 14335361 14335361 + L1-Ta germline . yes 690 .
srip23432 chr12 70167057 70167057 - L1-Ta germline . no 690 RAB3IP
srip24069 chr12 79570815 79570815 - L1-Ta germline . no 690 SYT1
srip25314 chr12 98672913 98672913 + L1-Ta germline . yes 690 .
srip27540 chr13 30215833 30215833 - L1-Ta germline . no 690 .
srip27621 chr13 33441812 33441812 - L1-Ta germline . no 690 .
srip28387 chr13 57793451 57793451 - L1-Ta germline . no 690 .
srip28709 chr13 61462318 61462318 - L1-Ta germline . no 690 .
srip29446 chr13 61734484 61734484 + L1-Ta germline . no 690 .
srip32082 chr13 86502081 86502081 + L1-Ta germline . no 690 .
srip32250 chr13 88851194 88851194 - L1-Ta germline . no 690 .
srip32478 chr13 92855881 92855881 + L1-Ta germline . yes 690 GPC5
srip34342 chr14 20554442 20554442 - L1-Ta germline . no 690 .
srip35377 chr14 30854669 30854669 + L1-Ta germline . no 690 .
srip37039 chr14 48662336 48662336 + L1-Ta germline . no 690 .
srip38913 chr14 95605326 95605326 + L1-Ta germline . no 690 DICER1
srip38992 chr15 20022208 20022208 - L1-Ta germline . no 690 .
srip40804 chr15 51875289 51875289 - L1-Ta germline . no 690 DMXL2
srip40865 chr15 53448042 53448042 - L1-Ta germline . no 690 .
srip41329 chr15 58012013 58012013 - L1-Ta germline . no 690 .
srip41820 chr15 71027483 71027483 + L1-Ta germline . yes 690 UACA
srip43869 chr16 7925421 7925421 + L1-Ta germline . no 690 .
srip45959 chr16 65729907 65729907 + L1-Ta germline . yes 690 .
srip47443 chr17 29659591 29659591 - L1-Ta germline . no 690 NF1
srip47507 chr17 32192799 32192799 + L1-Ta germline . yes 690 ACCN1
srip48736 chr18 5332408 5332408 - L1-Ta germline . no 690 .
srip49545 chr18 30185593 30185593 - L1-Ta germline . no 690 .
srip49837 chr18 45192801 45192801 + L1-Ta germline . no 690 .
srip50816 chr18 51956938 51956938 + L1-Ta germline . yes 690 .
srip50983 chr18 59579963 59579963 + L1-Ta germline . no 690 .
srip51069 chr18 59763726 59763726 - L1-Ta germline . no 690 PIGN
srip51236 chr18 63446487 63446487 - L1-Ta germline . no 690 CDH7
srip51308 chr18 68413712 68413712 - L1-Ta germline . no 690 .
srip51384 chr18 69024727 69024727 + L1-Ta germline . yes 690 .
srip52521 chr19 55091547 55091547 - L1-Ta germline . no 690 LILRA2
srip52876 chr2 13068018 13068018 + L1-Ta germline . no 690 .
srip53609 chr2 23191016 23191016 - L1-Ta germline . no 690 .
srip54393 chr2 41777137 41777137 - L1-Ta germline . no 690 .
srip55658 chr2 73354355 73354355 - L1-Ta germline . no 690 .
srip56324 chr2 83068216 83068216 + L1-Ta germline . yes 690 .
srip57018 chr2 108631988 108631988 - L1-Ta germline . no 690 .
srip57352 chr2 116246475 116246475 + L1-Ta germline . no 690 DPP10
srip57979 chr2 139785112 139785112 - L1-Ta germline . no 690 .
srip58380 chr2 142788891 142788891 - L1-Ta germline . no 690 LRP1B
srip58666 chr2 144624534 144624534 + L1-Ta germline . yes 690 .
srip59483 chr2 153864262 153864262 - L1-Ta germline . no 690 .
srip59842 chr2 170111155 170111155 + L1-Ta germline . yes 690 LRP2
srip59949 chr2 176346680 176346680 - L1-Ta germline . no 690 .
srip60780 chr2 191478703 191478703 - L1-Ta germline . no 690 .
srip60910 chr2 197933142 197933142 + L1-Ta germline . no 690 ANKRD44
srip61777 chr2 214647628 214647628 - L1-Ta germline . no 690 SPAG16
srip61843 chr2 218176494 218176494 + L1-Ta germline . yes 690 DIRC3
srip62715 chr2 239902375 239902375 - L1-Ta germline . no 690 .
srip63017 chr20 7096788 7096788 - L1-Ta germline . no 690 .
srip63314 chr20 12781652 12781652 - L1-Ta germline . no 690 .
srip63690 chr20 19400466 19400466 - L1-Ta germline . no 690 SLC24A3
srip63998 chr20 23412776 23412776 + L1-Ta germline . yes 690 .
srip64753 chr20 41952103 41952103 - L1-Ta germline . no 690 .
srip65636 chr21 19082350 19082350 - L1-Ta germline . no 690 .
srip66909 chr21 29069173 29069173 + L1-Ta germline . no 690 .
srip67753 chr22 22715585 22715585 + L1-Ta germline . no 690 IGL@
srip68258 chr22 29065287 29065287 + L1-Ta germline . yes 690 TTC28
srip69707 chr3 656444 656444 - L1-Ta germline validated no 690 .
srip69772 chr3 2050178 2050178 + L1-Ta germline . yes 690 .
srip69884 chr3 4080917 4080917 - L1-Ta germline . yes 690 .
srip70866 chr3 25740941 25740941 - L1-Ta germline . no 690 .
srip70925 chr3 26439488 26439488 - L1-Ta germline . no 690 .
srip71384 chr3 33554072 33554072 + L1-Ta germline . no 690 CLASP2
srip73368 chr3 59852889 59852889 + L1-Ta germline . no 690 FHIT
srip74625 chr3 81770349 81770349 + L1-Ta germline . yes 690 GBE1
srip76405 chr3 103275235 103275235 - L1-Ta germline . no 690 .
srip76512 chr3 105473860 105473860 - L1-Ta germline . no 690 CBLB
srip76681 chr3 109836400 109836400 - L1-Ta germline . no 690 .
srip76793 chr3 116084880 116084880 + L1-Ta germline . no 690 LSAMP-AS1;LSAMP
srip77400 chr3 129972765 129972765 + L1-Ta germline . yes 690 COL6A4P2
srip77596 chr3 132664831 132664831 - L1-Ta germline . no 690 .
srip77838 chr3 137073450 137073450 + L1-Ta germline . no 690 .
srip78859 chr3 152311594 152311594 - L1-Ta germline . no 690 .
srip78947 chr3 154632590 154632590 + L1-Ta germline . yes 690 .
srip79247 chr3 158813156 158813156 - L1-Ta germline . yes 690 IQCJ;IQCJ-SCHIP1
srip79869 chr3 169269954 169269954 + L1-Ta germline . no 690 MECOM
srip79966 chr3 172749131 172749131 - L1-Ta germline . no 690 SPATA16
srip80215 chr3 175677955 175677955 - L1-Ta germline . no 690 .
srip80339 chr3 176091321 176091321 + L1-Ta germline . no 690 .
srip81624 chr3 187835306 187835306 - L1-Ta germline . no 690 .
srip83318 chr4 19170950 19170950 + L1-Ta germline . no 690 .
srip83630 chr4 26929329 26929329 + L1-Ta germline . no 690 STIM2
srip84578 chr4 46799112 46799112 + L1-Ta germline . yes 690 COX7B2
srip84630 chr4 46883027 46883027 + L1-Ta germline . no 690 .
srip85030 chr4 48738022 48738022 + L1-Ta germline . no 690 FRYL
srip85593 chr4 58428313 58428313 - L1-Ta germline . no 690 .
srip85886 chr4 59442445 59442445 - L1-Ta germline . no 690 .
srip86336 chr4 66809073 66809073 - L1-Ta germline . no 690 .
srip87037 chr4 71093305 71093305 + L1-Ta germline . no 690 C4orf7
srip87129 chr4 75642671 75642671 - L1-Ta germline . no 690 .
srip87194 chr4 79032904 79032904 + L1-Ta germline . yes 690 FRAS1
srip88079 chr4 88486275 88486275 + L1-Ta germline . yes 690 .
srip88370 chr4 99513572 99513572 - L1-Ta germline . no 690 TSPAN5
srip89300 chr4 107492188 107492188 - L1-Ta germline . no 690 .
srip89888 chr4 112628959 112628959 + L1-Ta germline . no 690 .
srip90332 chr4 115132696 115132696 + L1-Ta germline . no 690 .
srip90420 chr4 117124963 117124963 - L1-Ta germline . no 690 .
srip91179 chr4 127596258 127596258 + L1-Ta germline . no 690 .
srip92246 chr4 134596424 134596424 + L1-Ta germline . no 690 .
srip92335 chr4 136006539 136006539 + L1-Ta germline . no 690 .
srip93190 chr4 147543284 147543284 + L1-Ta germline . no 690 .
srip94168 chr4 167369021 167369021 - L1-Ta germline . no 690 .
srip94481 chr4 170281916 170281916 - L1-Ta germline . no 690 .
srip94545 chr4 170436610 170436610 - L1-Ta germline . no 690 NEK1
srip95132 chr4 182695155 182695155 - L1-Ta germline . no 690 .
srip95746 chr5 7603653 7603653 - L1-Ta germline . no 690 ADCY2
srip96421 chr5 12197468 12197468 - L1-Ta germline . yes 690 .
srip96975 chr5 23070273 23070273 + L1-Ta germline validated no 690 .
srip97803 chr5 33633345 33633345 - L1-Ta germline . no 690 ADAMTS12
srip98152 chr5 34153955 34153955 + L1-Ta germline . yes 690 .
srip98857 chr5 51488295 51488295 - L1-Ta germline . no 690 .
srip99536 chr5 68263470 68263470 - L1-Ta germline . no 690 .
srip101469 chr5 99981611 99981611 + L1-Ta germline . yes 690 .
srip101544 chr5 105483500 105483500 - L1-Ta germline . no 690 .
srip102604 chr5 110474800 110474800 + L1-Ta germline . yes 690 .
srip102830 chr5 118941211 118941211 + L1-Ta germline . no 690 .
srip102869 chr5 121006042 121006042 - L1-Ta germline . no 690 .
srip103960 chr5 138420464 138420464 + L1-Ta germline . yes 690 SIL1
srip104283 chr5 144473640 144473640 + L1-Ta germline . no 690 .
srip104377 chr5 147337963 147337963 - L1-Ta germline . no 690 .
srip105562 chr5 159351193 159351193 - L1-Ta germline . no 690 ADRA1B
srip106083 chr5 172829796 172829796 - L1-Ta germline . no 690 .
srip107714 chr6 18910854 18910854 - L1-Ta germline . no 690 .
srip108234 chr6 39645329 39645329 - L1-Ta germline . yes 690 KIF6
srip108694 chr6 46310294 46310294 + L1-Ta germline . no 690 .
srip108796 chr6 50611605 50611605 - L1-Ta germline . no 690 .
srip109438 chr6 63368195 63368195 + L1-Ta germline . no 690 .
srip109905 chr6 67313668 67313668 + L1-Ta germline . yes 690 .
srip110162 chr6 70726265 70726265 + L1-Ta germline . yes 690 COL19A1
srip110434 chr6 74865444 74865444 - L1-Ta germline . no 690 .
srip112037 chr6 91669505 91669505 - L1-Ta germline . no 690 .
srip112956 chr6 113030984 113030984 + L1-Ta germline . no 690 LOC100287612
srip113119 chr6 115899917 115899917 - L1-Ta germline . no 690 .
srip113612 chr6 136712687 136712687 + L1-Ta germline . yes 690 MAP7
srip113856 chr6 142450109 142450109 - L1-Ta germline . no 690 .
srip114187 chr6 145500938 145500938 - L1-Ta germline . no 690 .
srip114849 chr6 153029982 153029982 - L1-Ta germline . no 690 MYCT1
srip115772 chr6 162404960 162404960 + L1-Ta germline . no 690 PARK2
srip116564 chr7 25081462 25081462 - L1-Ta germline . no 690 .
srip116682 chr7 28783416 28783416 - L1-Ta germline . no 690 CREB5
srip117154 chr7 46350337 46350337 - L1-Ta germline . no 690 .
srip118596 chr7 69668336 69668336 + L1-Ta germline . yes 690 AUTS2
srip118650 chr7 69828469 69828469 + L1-Ta germline . no 690 AUTS2
srip122105 chr7 109548699 109548699 + L1-Ta germline . no 690 .
srip122516 chr7 113139394 113139394 + L1-Ta germline . yes 690 .
srip123226 chr7 141620449 141620449 - L1-Ta germline . no 690 .
srip124367 chr8 5829277 5829277 - L1-Ta germline . no 690 .
srip124819 chr8 9597567 9597567 + L1-Ta germline . yes 690 TNKS
srip125035 chr8 18768149 18768149 + L1-Ta germline . yes 690 PSD3
srip125812 chr8 41361861 41361861 + L1-Ta germline . no 690 GOLGA7
srip128537 chr8 97911008 97911008 + L1-Ta germline . yes 690 PGCP
srip128689 chr8 100233000 100233000 - L1-Ta germline . no 690 VPS13B
srip128957 chr8 114072203 114072203 - L1-Ta germline . no 690 CSMD3
srip130438 chr8 137450317 137450317 - L1-Ta germline . yes 690 .
srip130527 chr9 1337904 1337904 - L1-Ta germline . no 690 .
srip131111 chr9 6290488 6290488 + L1-Ta germline . no 690 .
srip131653 chr9 10137698 10137698 + L1-Ta germline . yes 690 PTPRD
srip131685 chr9 12556845 12556845 - L1-Ta germline . no 690 .
srip131924 chr9 28111894 28111894 - L1-Ta germline . yes 690 LINGO2
srip134320 chr9 86065262 86065262 - L1-Ta germline . no 690 FRMD3
srip134394 chr9 92917935 92917935 + L1-Ta germline . yes 690 .
srip134461 chr9 94058479 94058479 - L1-Ta germline . no 690 AUH
srip134613 chr9 98465870 98465870 + L1-Ta germline . yes 690 .
srip134767 chr9 102615582 102615582 - L1-Ta germline . no 690 NR4A3
srip136364 chrX 11731399 11731399 + L1-Ta germline . yes 690 .
srip136902 chrX 34837319 34837319 - L1-Ta germline . no 690 .
srip136982 chrX 45449426 45449426 + L1-Ta germline . no 690 .
srip137069 chrX 49784005 49784005 - L1-Ta germline . no 690 CLCN5
srip137562 chrX 55585146 55585146 - L1-Ta germline . no 690 .
srip138017 chrX 63233094 63233094 - L1-Ta germline . no 690 .
srip138385 chrX 67263241 67263241 + L1-Ta germline . no 690 OPHN1
srip138506 chrX 72606851 72606851 + L1-Ta germline . no 690 .
srip138772 chrX 75543182 75543182 - L1-Ta germline . no 690 .
srip139057 chrX 75949601 75949601 + L1-Ta germline . no 690 .
srip139449 chrX 85781783 85781783 + L1-Ta germline . no 690 DACH2
srip139542 chrX 94857127 94857127 + L1-Ta germline . yes 690 .
srip140181 chrX 105718545 105718545 + L1-Ta germline . yes 690 .
srip140644 chrX 118569413 118569413 - L1-Ta germline . no 690 SLC25A43
srip140800 chrX 119892835 119892835 - L1-Ta germline . no 690 .
srip140868 chrX 120397638 120397638 - L1-Ta germline . no 690 .
srip141646 chrX 137146500 137146500 + L1-Ta germline . no 690 .
srip142157 chrX 154745667 154745667 - L1-Ta germline . no 690 TMLHE