euL1db - The European database of L1-HS retrotransposon insertions in humans

euL1db

The European database of L1-HS retrotransposon insertions in humans

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Study Page

Study ID Ewing2010

Citation:
Ewing, A.D. and Kazazian, H.H. (2010) High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. Genome Res, 20, 1262-1270.

Pubmed: PMID:20488934

Study Summary

Samples

Individuals

Methods

Curation

Description
In this study authors used high-throughput sequencing, they devised a technique to determine the insertion sites of virtually all members of the human-specific L1 retrotransposon family in any human genome. Using diagnostic nucleotides, they were able to locate the L1Hs copies corresponding specifically to the pre-Ta, Ta-0, and Ta-1 L1Hs subfamilies, with over 90% of sequenced reads corresponding to human-specific elements.

Mapped assembly	Original assembly	Browse by SRIP	Browse by MRIP
hg19_NCBI37	hg18_NCBI37	SRIP	MRIP

Sample ID	Sample name	Relationship	Clinical	Anatomopathology	Tissue	Sub Tissue	WGA	Size
580	GM11993	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
581	GM12878	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
582	GM12891	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
583	GM12892	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
584	GM19238	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
585	GM19239	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
586	GM19240	Solo	Healthy	Normal	Blood	B-Lymphocyte	no	cell-pool
587	JapnICh	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
588	JapnIFa	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
589	JapnIMo	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
590	JapnYChR1	Replicate1	Healthy	Normal	unknown	unknown	no	cell-pool
591	JapnYChR2	Replicate2	Healthy	Normal	unknown	unknown	no	cell-pool
592	JapnYFaR1	Replicate1	Healthy	Normal	unknown	unknown	no	cell-pool
593	JapnYFaR2	Replicate2	Healthy	Normal	unknown	unknown	no	cell-pool
594	JapnYMoR1	Replicate1	Healthy	Normal	unknown	unknown	no	cell-pool
595	JapnYMoR2	Replicate2	Healthy	Normal	unknown	unknown	no	cell-pool
596	SB3Ch	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
597	SB3Fa	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
598	SB3Mo	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
599	SB4Ch	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
600	SB4Fa	Solo	Healthy	Normal	unknown	unknown	no	cell-pool
601	SB4Mo	Solo	Healthy	Normal	unknown	unknown	no	cell-pool

Individual Name	FamilyID	Gender	Population	Clinical	Disease	Relationship	Father	Mother
GM11993	0	Female	CEPH	Healthy	unknown	Paternal_grandMother	.
GM12878	0	Female	CEPH	Healthy	unknown	Mother	.
GM12891	0	Male	CEPH	Healthy	unknown	Maternal_grandFather	.
GM12892	0	Female	CEPH	Healthy	unknown	Maternal_grandMother	.
GM19238	0	Female	YRI	Healthy	unknown	Mother	.	.
GM19239	0	Male	YRI	Healthy	unknown	Father	.	.
GM19240	0	Male	YRI	Healthy	unknown	Child	.	.
JapnICh	47	Male	Japanese	Healthy	unknown	Child	.	.
JapnIFa	47	Male	Japanese	Healthy	unknown	Father	.	.
JapnIMo	47	Female	Japanese	Healthy	unknown	Mother	.	.
JapnYCh	48	Male	Japanese	Healthy	unknown	Child	.	.
JapnYFa	48	Male	Japanese	Healthy	unknown	Father	.	.
JapnYMo	48	Female	Japanese	Healthy	unknown	Mother	.	.
SB3Ch	49	Male	CEPH	Healthy	unknown	Child	.
SB3Fa	49	Male	CEPH	Healthy	unknown	Father	.
SB3Mo	49	Female	CEPH	Healthy	unknown	Mother	.
SB4Ch	50	Male	CEPH	Healthy	unknown	Child	.
SB4Fa	50	Male	CEPH	Healthy	unknown	Father	.
SB4Mo	50	Female	CEPH	Healthy	unknown	Mother	.

euL1db The European database of L1-HS retrotransposon insertions in humans

euL1db

The European database of L1-HS retrotransposon insertions in humans